Wall clock time and date at job start Tue Mar 31 2020 07:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47285 * 2 1 4 4 C 1.53002 * 109.46746 * 240.00056 * 2 1 3 5 5 O 1.42906 * 109.47183 * 55.00260 * 4 2 1 6 6 S 1.81397 * 109.47091 * 120.00293 * 2 1 3 7 7 C 1.81395 * 102.99967 * 294.99862 * 6 2 1 8 8 C 1.50702 * 109.47168 * 179.97438 * 7 6 2 9 9 O 1.21278 * 119.99761 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00320 * 179.97438 * 8 7 6 11 11 C 1.37141 * 119.99507 * 354.95156 * 10 8 7 12 12 H 1.07993 * 120.00601 * 344.74620 * 11 10 8 13 13 C 1.38892 * 119.99884 * 164.73749 * 11 10 8 14 14 N 1.31431 * 119.99820 * 343.63057 * 13 11 10 15 15 Si 1.86794 * 120.00263 * 163.62260 * 13 11 10 16 16 H 1.48501 * 109.47220 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47137 * 120.00524 * 15 13 11 18 18 H 1.48494 * 109.47459 * 240.00383 * 15 13 11 19 19 C 1.39786 * 120.00065 * 174.95437 * 10 8 7 20 20 C 1.38962 * 120.07319 * 101.20811 * 19 10 8 21 21 C 1.38085 * 119.91631 * 179.78728 * 20 19 10 22 22 C 1.38308 * 120.08034 * 0.46491 * 21 20 19 23 23 C 1.38304 * 120.15475 * 359.79180 * 22 21 20 24 24 C 1.38085 * 120.07949 * 359.96959 * 23 22 21 25 25 H 1.09008 * 109.46945 * 59.99467 * 1 2 3 26 26 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46754 * 299.99996 * 1 2 3 28 28 H 1.08999 * 109.47360 * 295.00054 * 4 2 1 29 29 H 1.09002 * 109.47153 * 174.99766 * 4 2 1 30 30 H 0.96700 * 114.00153 * 179.97438 * 5 4 2 31 31 H 1.09000 * 109.47302 * 299.99804 * 7 6 2 32 32 H 1.09001 * 109.47344 * 60.00349 * 7 6 2 33 33 H 0.96994 * 119.99976 * 185.01566 * 14 13 11 34 34 H 1.07999 * 120.04145 * 359.97438 * 20 19 10 35 35 H 1.08004 * 119.95765 * 180.25173 * 21 20 19 36 36 H 1.08002 * 119.92359 * 179.76367 * 22 21 20 37 37 H 1.07998 * 119.96446 * 179.97438 * 23 22 21 38 38 H 1.08001 * 120.03954 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.4702 -0.1188 -2.4131 6 16 2.1347 -0.8552 1.4811 7 6 1.5665 0.2152 2.8308 8 6 1.9974 -0.3697 4.1512 9 8 2.6255 -1.4068 4.1788 10 7 1.6848 0.2596 5.3012 11 6 1.0660 1.4830 5.2670 12 1 1.0486 2.0539 4.3505 13 6 0.4616 1.9877 6.4111 14 7 0.1946 1.1890 7.4202 15 14 0.0282 3.8017 6.5159 16 1 0.4288 4.4798 5.2570 17 1 -1.4361 3.9502 6.7133 18 1 0.7468 4.4171 7.6604 19 6 1.9913 -0.3346 6.5288 20 6 3.1045 0.0851 7.2470 21 6 3.4018 -0.5011 8.4614 22 6 2.5987 -1.5114 8.9585 23 6 1.4930 -1.9353 8.2439 24 6 1.1869 -1.3502 7.0311 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.7516 -1.7715 -1.2057 29 1 3.1263 -0.6444 -1.2953 30 1 1.7505 -0.5261 -3.2442 31 1 2.0003 1.2083 2.7142 32 1 0.4793 0.2880 2.8037 33 1 -0.2924 1.5248 8.1889 34 1 3.7346 0.8709 6.8572 35 1 4.2645 -0.1726 9.0220 36 1 2.8357 -1.9707 9.9068 37 1 0.8683 -2.7247 8.6348 38 1 0.3236 -1.6820 6.4734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079091563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:49 Heat of formation + Delta-G solvation = -47.126225 kcal Electronic energy + Delta-G solvation = -21333.215311 eV Core-core repulsion = 18074.479529 eV Total energy + Delta-G solvation = -3258.735782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.39068 -37.35580 -37.25196 -34.81709 -33.06199 -31.76395 -30.11228 -29.90391 -27.97132 -26.37342 -25.02549 -21.97826 -21.55234 -21.39487 -19.35504 -17.93735 -17.75424 -16.37679 -15.76209 -15.57783 -15.30004 -14.95302 -14.63276 -14.38989 -14.26797 -13.81349 -13.40074 -13.20134 -12.90028 -12.54304 -12.45420 -12.09995 -11.73846 -11.65272 -11.56136 -11.40248 -11.22846 -10.99126 -10.92145 -10.57843 -10.39830 -10.31284 -10.12201 -9.50631 -9.40737 -8.76578 -8.21159 -7.88753 -7.61255 -7.28264 -6.33353 -4.12056 1.77389 2.44378 2.49519 2.90171 3.00971 3.13193 3.15525 3.61353 3.94674 4.26343 4.53040 4.77865 4.81373 4.96292 4.99392 5.27435 5.51948 5.55921 5.68844 5.75716 5.78532 5.84645 5.88728 5.96835 6.00159 6.06217 6.28724 6.39902 6.54417 6.77923 7.02456 7.21872 7.31086 7.43610 7.44777 7.55419 7.72438 7.92781 8.33149 8.88642 9.22962 9.66454 10.51283 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.004741 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.829634 B = 5904.086877 C = 7140.292686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 H 0.088 0.912 4 C 0.100 3.900 5 O -0.570 6.570 6 S -0.187 6.187 7 C -0.088 4.088 8 C 0.478 3.522 9 O -0.576 6.576 10 N -0.408 5.408 11 C -0.357 4.357 12 H 0.102 0.898 13 C 0.047 3.953 14 N -0.843 5.843 15 Si 0.920 3.080 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.278 1.278 19 C 0.239 3.761 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.144 4.144 23 C -0.121 4.121 24 C -0.066 4.066 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.380 0.620 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.273 0.727 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -0.925 -8.261 8.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.213 4.213 3 H 0.107 0.893 4 C 0.021 3.979 5 O -0.376 6.376 6 S 0.039 5.961 7 C -0.239 4.239 8 C 0.266 3.734 9 O -0.460 6.460 10 N -0.125 5.125 11 C -0.483 4.483 12 H 0.120 0.880 13 C -0.161 4.161 14 N -0.478 5.478 15 Si 0.747 3.253 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.203 1.203 19 C 0.149 3.851 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.163 4.163 23 C -0.140 4.140 24 C -0.085 4.085 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.227 0.773 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.499 -1.952 -7.495 7.889 hybrid contribution -0.941 2.088 -0.131 2.294 sum 0.558 0.135 -7.626 7.648 Atomic orbital electron populations 1.21948 0.92874 1.02912 1.02240 1.23153 0.99918 1.02637 0.95612 0.89345 1.21750 0.96539 0.95666 0.83927 1.86455 1.73174 1.61795 1.16165 1.87079 1.74749 1.36511 0.97758 1.23306 1.05103 1.01182 0.94281 1.19193 0.84628 0.85272 0.84261 1.90621 1.44041 1.24693 1.86676 1.41216 1.51462 1.17981 1.01826 1.19620 1.36382 0.93182 0.99161 0.87999 1.25275 0.95734 0.99779 0.95359 1.69947 1.35342 1.34738 1.07768 0.85969 0.78215 0.82391 0.78765 1.19235 1.20548 1.20338 1.17048 0.91497 0.91061 0.85537 1.20981 0.97350 1.00353 0.95506 1.20663 0.99675 0.97799 0.96028 1.20745 0.96877 0.99097 0.99548 1.20685 0.97637 1.00368 0.95332 1.20798 0.97139 0.95496 0.95088 0.91425 0.91720 0.92408 0.92669 0.92743 0.77343 0.88330 0.87751 0.91590 0.87498 0.87567 0.87718 0.87527 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.90 37.16 0.33 -1.52 16 2 C -0.08 -1.16 3.16 -26.73 -0.08 -1.25 16 3 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 4 C 0.10 1.15 6.55 37.16 0.24 1.39 16 5 O -0.57 -5.98 12.78 -35.23 -0.45 -6.43 16 6 S -0.19 -3.30 20.29 -107.50 -2.18 -5.48 16 7 C -0.09 -1.70 4.66 36.01 0.17 -1.53 16 8 C 0.48 11.44 7.60 -10.98 -0.08 11.36 16 9 O -0.58 -15.26 15.84 5.56 0.09 -15.17 16 10 N -0.41 -10.11 2.66 -58.98 -0.16 -10.27 16 11 C -0.36 -8.66 9.19 -14.93 -0.14 -8.80 16 12 H 0.10 2.29 6.46 -52.49 -0.34 1.95 16 13 C 0.05 1.13 5.24 -17.48 -0.09 1.04 16 14 N -0.84 -21.30 10.34 55.49 0.57 -20.72 16 15 Si 0.92 18.88 29.59 -169.99 -5.03 13.85 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 C 0.24 5.91 2.29 -83.70 -0.19 5.72 16 20 C -0.12 -2.83 9.95 -39.37 -0.39 -3.22 16 21 C -0.12 -2.49 10.04 -39.61 -0.40 -2.89 16 22 C -0.14 -2.80 10.04 -39.53 -0.40 -3.20 16 23 C -0.12 -2.50 10.04 -39.61 -0.40 -2.90 16 24 C -0.07 -1.56 8.66 -39.37 -0.34 -1.90 16 25 H 0.07 0.84 7.56 -51.92 -0.39 0.45 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.78 6.92 -51.93 -0.36 0.42 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.38 2.12 9.12 45.56 0.42 2.53 16 31 H 0.10 1.78 7.52 -51.92 -0.39 1.39 16 32 H 0.10 1.93 7.14 -51.92 -0.37 1.56 16 33 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.10 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -29.94 335.03 -8.26 -38.20 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.38 Total: 8.68 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.77 Total: -7.70 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.42 Total: -30.99 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.36 Total: -21.60 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.18 Total: -5.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.94 -8.26 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079091563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds