Wall clock time and date at job start Tue Mar 31 2020 07:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47285 * 2 1 4 4 C 1.53002 * 109.46746 * 240.00056 * 2 1 3 5 5 O 1.42906 * 109.47183 * 55.00260 * 4 2 1 6 6 S 1.81397 * 109.47091 * 120.00293 * 2 1 3 7 7 C 1.81395 * 102.99967 * 294.99862 * 6 2 1 8 8 C 1.50702 * 109.47168 * 179.97438 * 7 6 2 9 9 O 1.21278 * 119.99761 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00320 * 179.97438 * 8 7 6 11 11 C 1.37141 * 119.99507 * 354.95156 * 10 8 7 12 12 H 1.07993 * 120.00601 * 344.74620 * 11 10 8 13 13 C 1.38892 * 119.99884 * 164.73749 * 11 10 8 14 14 N 1.31431 * 119.99820 * 343.63057 * 13 11 10 15 15 Si 1.86794 * 120.00263 * 163.62260 * 13 11 10 16 16 H 1.48501 * 109.47220 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47137 * 120.00524 * 15 13 11 18 18 H 1.48494 * 109.47459 * 240.00383 * 15 13 11 19 19 C 1.39786 * 120.00065 * 174.95437 * 10 8 7 20 20 C 1.38962 * 120.07319 * 101.20811 * 19 10 8 21 21 C 1.38085 * 119.91631 * 179.78728 * 20 19 10 22 22 C 1.38308 * 120.08034 * 0.46491 * 21 20 19 23 23 C 1.38304 * 120.15475 * 359.79180 * 22 21 20 24 24 C 1.38085 * 120.07949 * 359.96959 * 23 22 21 25 25 H 1.09008 * 109.46945 * 59.99467 * 1 2 3 26 26 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46754 * 299.99996 * 1 2 3 28 28 H 1.08999 * 109.47360 * 295.00054 * 4 2 1 29 29 H 1.09002 * 109.47153 * 174.99766 * 4 2 1 30 30 H 0.96700 * 114.00153 * 179.97438 * 5 4 2 31 31 H 1.09000 * 109.47302 * 299.99804 * 7 6 2 32 32 H 1.09001 * 109.47344 * 60.00349 * 7 6 2 33 33 H 0.96994 * 119.99976 * 185.01566 * 14 13 11 34 34 H 1.07999 * 120.04145 * 359.97438 * 20 19 10 35 35 H 1.08004 * 119.95765 * 180.25173 * 21 20 19 36 36 H 1.08002 * 119.92359 * 179.76367 * 22 21 20 37 37 H 1.07998 * 119.96446 * 179.97438 * 23 22 21 38 38 H 1.08001 * 120.03954 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.4702 -0.1188 -2.4131 6 16 2.1347 -0.8552 1.4811 7 6 1.5665 0.2152 2.8308 8 6 1.9974 -0.3697 4.1512 9 8 2.6255 -1.4068 4.1788 10 7 1.6848 0.2596 5.3012 11 6 1.0660 1.4830 5.2670 12 1 1.0486 2.0539 4.3505 13 6 0.4616 1.9877 6.4111 14 7 0.1946 1.1890 7.4202 15 14 0.0282 3.8017 6.5159 16 1 0.4288 4.4798 5.2570 17 1 -1.4361 3.9502 6.7133 18 1 0.7468 4.4171 7.6604 19 6 1.9913 -0.3346 6.5288 20 6 3.1045 0.0851 7.2470 21 6 3.4018 -0.5011 8.4614 22 6 2.5987 -1.5114 8.9585 23 6 1.4930 -1.9353 8.2439 24 6 1.1869 -1.3502 7.0311 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.7516 -1.7715 -1.2057 29 1 3.1263 -0.6444 -1.2953 30 1 1.7505 -0.5261 -3.2442 31 1 2.0003 1.2083 2.7142 32 1 0.4793 0.2880 2.8037 33 1 -0.2924 1.5248 8.1889 34 1 3.7346 0.8709 6.8572 35 1 4.2645 -0.1726 9.0220 36 1 2.8357 -1.9707 9.9068 37 1 0.8683 -2.7247 8.6348 38 1 0.3236 -1.6820 6.4734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079091563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:48 Heat of formation + Delta-G solvation = -65.208292 kcal Electronic energy + Delta-G solvation = -21333.999408 eV Core-core repulsion = 18074.479529 eV Total energy + Delta-G solvation = -3259.519879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17629 -39.00018 -38.20534 -36.64177 -34.08466 -33.61767 -31.76053 -31.57922 -29.60940 -27.37804 -26.87409 -23.56541 -23.22699 -22.58935 -21.16260 -19.61112 -18.71203 -18.10793 -17.29546 -16.93299 -16.75942 -16.46396 -16.33406 -16.05556 -15.43404 -15.24311 -14.99030 -14.68461 -14.24649 -14.11447 -13.73717 -13.62245 -13.40171 -13.26473 -12.95651 -12.88354 -12.78883 -12.51315 -12.22730 -12.06850 -11.99794 -11.96471 -11.29722 -10.95548 -10.72076 -10.63284 -10.04109 -9.58315 -9.34615 -8.69420 -8.14434 -6.00813 0.42244 0.76438 0.81465 1.35456 1.45372 1.55238 1.56858 1.82064 2.23540 2.81261 3.05147 3.23114 3.41541 3.76583 4.02556 4.09753 4.13602 4.23591 4.27786 4.28054 4.38343 4.40410 4.57548 4.61249 4.74313 4.83540 4.89113 4.96534 5.08510 5.22663 5.34357 5.36912 5.63278 5.77093 5.80441 5.99309 6.22219 6.53246 6.87903 7.02667 7.40281 7.83368 8.68261 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.004741 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.829634 B = 5904.086877 C = 7140.292686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 H 0.091 0.909 4 C 0.106 3.894 5 O -0.579 6.579 6 S -0.219 6.219 7 C -0.076 4.076 8 C 0.463 3.537 9 O -0.612 6.612 10 N -0.416 5.416 11 C -0.374 4.374 12 H 0.114 0.886 13 C 0.008 3.992 14 N -0.866 5.866 15 Si 0.986 3.014 16 H -0.256 1.256 17 H -0.278 1.278 18 H -0.283 1.283 19 C 0.212 3.788 20 C -0.150 4.150 21 C -0.120 4.120 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.094 4.094 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.402 0.598 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.271 0.729 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -0.219 -8.327 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.202 4.202 3 H 0.109 0.891 4 C 0.027 3.973 5 O -0.389 6.389 6 S 0.007 5.993 7 C -0.227 4.227 8 C 0.253 3.747 9 O -0.498 6.498 10 N -0.133 5.133 11 C -0.500 4.500 12 H 0.132 0.868 13 C -0.198 4.198 14 N -0.501 5.501 15 Si 0.809 3.191 16 H -0.180 1.180 17 H -0.204 1.204 18 H -0.208 1.208 19 C 0.122 3.878 20 C -0.170 4.170 21 C -0.138 4.138 22 C -0.157 4.157 23 C -0.140 4.140 24 C -0.113 4.113 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.253 0.747 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.574 -1.248 -7.586 7.847 hybrid contribution -0.957 1.811 -0.125 2.052 sum 0.617 0.562 -7.711 7.756 Atomic orbital electron populations 1.21910 0.92342 1.02945 1.02390 1.23197 1.00222 1.02399 0.94342 0.89061 1.21600 0.96882 0.95403 0.83430 1.86391 1.73331 1.62201 1.16928 1.87115 1.75349 1.37475 0.99378 1.23111 1.05280 1.01580 0.92738 1.19894 0.84210 0.85048 0.85536 1.90572 1.45629 1.26210 1.87436 1.41484 1.51152 1.18234 1.02387 1.20014 1.36626 0.93336 0.99981 0.86812 1.26076 0.95493 1.03356 0.94889 1.70105 1.35720 1.36194 1.08072 0.84980 0.77689 0.77599 0.78802 1.17991 1.20372 1.20841 1.17372 0.92526 0.91925 0.86025 1.21145 0.97481 1.01263 0.97081 1.21100 1.00578 0.97224 0.94929 1.21222 0.95559 0.98213 1.00711 1.21080 0.98348 1.00422 0.94103 1.20824 0.97144 0.96682 0.96695 0.90264 0.91788 0.93106 0.92331 0.91963 0.74697 0.87202 0.87245 0.91863 0.88229 0.84137 0.83357 0.84630 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.90 71.98 0.64 -2.80 16 2 C -0.07 -1.92 3.16 30.60 0.10 -1.82 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 4 C 0.11 2.24 6.55 71.98 0.47 2.71 16 5 O -0.58 -10.69 12.78 -148.98 -1.90 -12.59 16 6 S -0.22 -7.78 20.29 -56.49 -1.15 -8.93 16 7 C -0.08 -3.01 4.66 71.24 0.33 -2.68 16 8 C 0.46 22.97 7.60 87.66 0.67 23.63 16 9 O -0.61 -33.74 15.84 -3.02 -0.05 -33.79 16 10 N -0.42 -21.32 2.66 -458.90 -1.22 -22.53 16 11 C -0.37 -18.40 9.19 84.02 0.77 -17.62 16 12 H 0.11 5.13 6.46 -2.91 -0.02 5.11 16 13 C 0.01 0.37 5.24 84.91 0.44 0.82 16 14 N -0.87 -44.26 10.34 21.65 0.22 -44.04 16 15 Si 0.99 38.48 29.59 68.60 2.03 40.51 16 16 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 17 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 18 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 19 C 0.21 10.76 2.29 38.22 0.09 10.85 16 20 C -0.15 -7.04 9.95 22.41 0.22 -6.82 16 21 C -0.12 -4.67 10.04 22.25 0.22 -4.45 16 22 C -0.14 -5.05 10.04 22.30 0.22 -4.82 16 23 C -0.12 -4.87 10.04 22.25 0.22 -4.65 16 24 C -0.09 -4.57 8.66 22.41 0.19 -4.37 16 25 H 0.08 1.82 7.56 -2.38 -0.02 1.81 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.33 6.92 -2.39 -0.02 1.31 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.40 3.38 9.12 -74.06 -0.68 2.71 16 31 H 0.11 3.99 7.52 -2.39 -0.02 3.97 16 32 H 0.11 4.12 7.14 -2.39 -0.02 4.11 16 33 H 0.27 13.26 8.32 -92.71 -0.77 12.49 16 34 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 35 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 37 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.08 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -65.89 335.03 2.93 -62.96 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.39 Total: 30.45 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.60 Total: -12.03 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -1.00 Total: -66.58 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.95 Total: -46.39 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.15 Total: -8.93 kcal Total: -65.89 2.93 -62.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079091563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.249 kcal (2) G-P(sol) polarization free energy of solvation -65.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds