Wall clock time and date at job start Tue Mar 31 2020 07:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99893 * 2 1 4 4 C 1.52997 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47282 * 174.99945 * 4 3 2 6 6 C 1.52998 * 109.47156 * 55.00017 * 4 3 2 7 7 N 1.46493 * 109.47096 * 295.00066 * 4 3 2 8 8 C 1.34783 * 120.00266 * 204.99727 * 7 4 3 9 9 O 1.21554 * 119.99505 * 0.02562 * 8 7 4 10 10 C 1.47857 * 120.00551 * 180.02562 * 8 7 4 11 11 C 1.39674 * 120.09834 * 0.02598 * 10 8 7 12 12 C 1.38046 * 120.04015 * 179.97438 * 11 10 8 13 13 C 1.38176 * 120.23908 * 359.76355 * 12 11 10 14 14 C 1.39179 * 120.20513 * 0.51284 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.73865 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31631 * 119.99738 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46962 * 89.99772 * 20 18 16 22 22 H 1.48502 * 109.47274 * 210.00042 * 20 18 16 23 23 H 1.48499 * 109.47299 * 330.00031 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.47003 * 14 13 12 25 25 H 1.08997 * 109.47459 * 300.00135 * 1 2 3 26 26 H 1.08998 * 109.46997 * 60.00370 * 1 2 3 27 27 H 1.08995 * 109.46562 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46931 * 60.00042 * 3 2 1 29 29 H 1.09001 * 109.46939 * 300.00004 * 3 2 1 30 30 H 1.08996 * 109.47315 * 300.00346 * 6 4 3 31 31 H 1.09005 * 109.47089 * 59.99800 * 6 4 3 32 32 H 1.08997 * 109.47405 * 179.97438 * 6 4 3 33 33 H 0.97000 * 120.00523 * 25.00430 * 7 4 3 34 34 H 1.08002 * 119.98410 * 359.97438 * 11 10 8 35 35 H 1.07996 * 119.87866 * 180.02562 * 12 11 10 36 36 H 1.08006 * 119.89861 * 180.27092 * 13 12 11 37 37 H 0.96995 * 120.00040 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9785 2.1767 -0.0889 6 6 3.9790 0.3196 -1.1806 7 7 3.9756 0.5646 1.2527 8 6 5.2195 0.7948 1.7179 9 8 5.9759 1.5173 1.0987 10 6 5.6641 0.1684 2.9813 11 6 4.7969 -0.6627 3.6942 12 6 5.2134 -1.2474 4.8733 13 6 6.4894 -1.0178 5.3511 14 6 7.3599 -0.1869 4.6519 15 16 8.9837 0.1080 5.2691 16 6 8.7074 1.6065 6.1537 17 1 7.7071 2.0034 6.2447 18 6 9.7749 2.2767 6.7335 19 7 9.5683 3.3959 7.3947 20 14 11.5051 1.5908 6.5757 21 1 12.1457 2.1399 5.3536 22 1 12.3014 1.9769 7.7682 23 1 11.4438 0.1101 6.4797 24 6 6.9498 0.4053 3.4645 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6886 1.8465 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.5360 -0.6723 -1.0911 31 1 3.6514 0.7810 -2.1123 32 1 5.0656 0.2339 -1.1805 33 1 3.3720 -0.0118 1.7469 34 1 3.7998 -0.8481 3.3227 35 1 4.5408 -1.8898 5.4222 36 1 6.8110 -1.4815 6.2720 37 1 10.3147 3.8647 7.7998 38 1 7.6245 1.0473 2.9177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079382000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:33 Heat of formation + Delta-G solvation = -64.275649 kcal Electronic energy + Delta-G solvation = -20608.229378 eV Core-core repulsion = 17348.749941 eV Total energy + Delta-G solvation = -3259.479437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12647 -38.57319 -37.72775 -35.26919 -32.48640 -31.99387 -30.63953 -29.99071 -27.68735 -26.04451 -25.66787 -23.93091 -22.44637 -21.24351 -20.35739 -18.44111 -17.35175 -17.06183 -16.42459 -15.94349 -15.71800 -15.30931 -15.00062 -14.77701 -14.70258 -14.35537 -13.69312 -13.46603 -13.41019 -12.92083 -12.88311 -12.51370 -12.26826 -12.15141 -11.92617 -11.50404 -11.34250 -11.21785 -11.16878 -11.08748 -10.60768 -10.11861 -9.92466 -9.76928 -9.21031 -9.14179 -9.06868 -8.61895 -8.13548 -7.11935 -6.31827 -4.07067 1.13522 1.61931 2.86789 3.06510 3.11204 3.28424 3.38982 3.39848 3.52288 4.10109 4.27564 4.47477 4.72808 4.86224 4.89500 4.91650 4.97105 5.03454 5.06592 5.09243 5.20125 5.21814 5.29000 5.34303 5.56573 5.68328 5.80249 5.82751 5.95894 6.14488 6.21139 6.41753 6.54890 6.60027 6.70745 6.85389 7.13678 7.54142 7.92447 8.31172 8.45855 9.12140 10.77674 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027040 B = 0.003230 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.270744 B = 8665.867932 C = 9014.129258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.146 3.854 5 H 0.101 0.899 6 C -0.159 4.159 7 N -0.724 5.724 8 C 0.564 3.436 9 O -0.535 6.535 10 C -0.153 4.153 11 C -0.085 4.085 12 C -0.140 4.140 13 C -0.052 4.052 14 C -0.086 4.086 15 S -0.113 6.113 16 C -0.508 4.508 17 H 0.091 0.909 18 C 0.095 3.905 19 N -0.876 5.876 20 Si 0.858 3.142 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.239 1.239 24 C -0.017 4.017 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.272 0.728 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.597 -8.344 -13.044 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.026 4.026 4 C 0.042 3.958 5 H 0.119 0.881 6 C -0.218 4.218 7 N -0.377 5.377 8 C 0.353 3.647 9 O -0.413 6.413 10 C -0.157 4.157 11 C -0.104 4.104 12 C -0.160 4.160 13 C -0.073 4.073 14 C -0.196 4.196 15 S 0.121 5.879 16 C -0.655 4.655 17 H 0.109 0.891 18 C -0.114 4.114 19 N -0.513 5.513 20 Si 0.683 3.317 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.163 1.163 24 C -0.038 4.038 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.843 -8.406 -13.500 22.448 hybrid contribution -1.007 0.673 0.457 1.294 sum -16.850 -7.734 -13.043 22.668 Atomic orbital electron populations 1.22755 0.80849 1.02888 1.00065 1.87890 1.19788 1.27515 1.95436 1.22892 0.93067 0.85273 1.01334 1.21006 0.91496 0.98660 0.84659 0.88094 1.22079 1.02194 1.00741 0.96762 1.45913 1.15122 1.51702 1.24994 1.18389 0.81314 0.80321 0.84686 1.90769 1.53526 1.37676 1.59298 1.19839 0.96309 1.03055 0.96536 1.21199 0.98230 0.95920 0.95032 1.21046 0.96558 1.01643 0.96705 1.21892 0.92286 0.94850 0.98253 1.22181 1.01182 0.99608 0.96654 1.83061 1.05213 1.34600 1.64996 1.22246 0.98786 1.06914 1.37582 0.89104 1.24748 0.99076 0.93821 0.93770 1.69928 1.32588 1.15220 1.33533 0.86728 0.84277 0.81900 0.78830 1.19022 1.19816 1.16322 1.21893 0.93802 0.94479 0.93660 0.93956 0.94046 0.89520 0.92387 0.91674 0.91525 0.91961 0.91911 0.76124 0.86265 0.85641 0.84934 0.91819 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.23 9.56 -35.23 -0.34 -3.57 16 3 C 0.05 0.40 5.68 37.16 0.21 0.61 16 4 C 0.15 1.53 2.98 -67.94 -0.20 1.33 16 5 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 6 C -0.16 -1.62 9.29 37.16 0.35 -1.28 16 7 N -0.72 -8.75 5.01 -54.75 -0.27 -9.02 16 8 C 0.56 9.19 7.74 -12.32 -0.10 9.09 16 9 O -0.54 -10.55 16.01 5.32 0.09 -10.46 16 10 C -0.15 -2.58 5.87 -105.00 -0.62 -3.20 16 11 C -0.08 -1.17 9.54 -39.12 -0.37 -1.54 16 12 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 13 C -0.05 -0.91 9.79 -39.25 -0.38 -1.30 16 14 C -0.09 -1.80 5.45 -39.00 -0.21 -2.02 16 15 S -0.11 -2.76 19.38 -107.50 -2.08 -4.84 16 16 C -0.51 -14.69 10.01 30.92 0.31 -14.38 16 17 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 18 C 0.09 2.75 5.50 -17.45 -0.10 2.65 16 19 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 20 Si 0.86 21.16 27.74 -169.99 -4.71 16.45 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 24 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.68 7.56 -51.93 -0.39 0.29 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.08 6.41 -40.82 -0.26 3.82 16 34 H 0.12 1.20 6.40 -52.49 -0.34 0.87 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.13 2.20 8.06 -52.48 -0.42 1.77 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.14 3.05 7.65 -52.49 -0.40 2.65 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -33.29 339.84 -7.36 -40.65 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.17 Total: 3.21 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.76 Total: -11.83 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.50 Total: -34.72 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.25 Total: -14.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.08 Total: -4.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.29 -7.36 -40.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079382000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.630 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds