Wall clock time and date at job start Tue Mar 31 2020 07:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99893 * 2 1 4 4 C 1.52997 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47282 * 174.99945 * 4 3 2 6 6 C 1.52998 * 109.47156 * 55.00017 * 4 3 2 7 7 N 1.46493 * 109.47096 * 295.00066 * 4 3 2 8 8 C 1.34783 * 120.00266 * 204.99727 * 7 4 3 9 9 O 1.21554 * 119.99505 * 0.02562 * 8 7 4 10 10 C 1.47857 * 120.00551 * 180.02562 * 8 7 4 11 11 C 1.39674 * 120.09834 * 0.02598 * 10 8 7 12 12 C 1.38046 * 120.04015 * 179.97438 * 11 10 8 13 13 C 1.38176 * 120.23908 * 359.76355 * 12 11 10 14 14 C 1.39179 * 120.20513 * 0.51284 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.73865 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31631 * 119.99738 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46962 * 89.99772 * 20 18 16 22 22 H 1.48502 * 109.47274 * 210.00042 * 20 18 16 23 23 H 1.48499 * 109.47299 * 330.00031 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.47003 * 14 13 12 25 25 H 1.08997 * 109.47459 * 300.00135 * 1 2 3 26 26 H 1.08998 * 109.46997 * 60.00370 * 1 2 3 27 27 H 1.08995 * 109.46562 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46931 * 60.00042 * 3 2 1 29 29 H 1.09001 * 109.46939 * 300.00004 * 3 2 1 30 30 H 1.08996 * 109.47315 * 300.00346 * 6 4 3 31 31 H 1.09005 * 109.47089 * 59.99800 * 6 4 3 32 32 H 1.08997 * 109.47405 * 179.97438 * 6 4 3 33 33 H 0.97000 * 120.00523 * 25.00430 * 7 4 3 34 34 H 1.08002 * 119.98410 * 359.97438 * 11 10 8 35 35 H 1.07996 * 119.87866 * 180.02562 * 12 11 10 36 36 H 1.08006 * 119.89861 * 180.27092 * 13 12 11 37 37 H 0.96995 * 120.00040 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9785 2.1767 -0.0889 6 6 3.9790 0.3196 -1.1806 7 7 3.9756 0.5646 1.2527 8 6 5.2195 0.7948 1.7179 9 8 5.9759 1.5173 1.0987 10 6 5.6641 0.1684 2.9813 11 6 4.7969 -0.6627 3.6942 12 6 5.2134 -1.2474 4.8733 13 6 6.4894 -1.0178 5.3511 14 6 7.3599 -0.1869 4.6519 15 16 8.9837 0.1080 5.2691 16 6 8.7074 1.6065 6.1537 17 1 7.7071 2.0034 6.2447 18 6 9.7749 2.2767 6.7335 19 7 9.5683 3.3959 7.3947 20 14 11.5051 1.5908 6.5757 21 1 12.1457 2.1399 5.3536 22 1 12.3014 1.9769 7.7682 23 1 11.4438 0.1101 6.4797 24 6 6.9498 0.4053 3.4645 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6886 1.8465 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.5360 -0.6723 -1.0911 31 1 3.6514 0.7810 -2.1123 32 1 5.0656 0.2339 -1.1805 33 1 3.3720 -0.0118 1.7469 34 1 3.7998 -0.8481 3.3227 35 1 4.5408 -1.8898 5.4222 36 1 6.8110 -1.4815 6.2720 37 1 10.3147 3.8647 7.7998 38 1 7.6245 1.0473 2.9177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079382000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:33 Heat of formation + Delta-G solvation = -87.525535 kcal Electronic energy + Delta-G solvation = -20609.237569 eV Core-core repulsion = 17348.749941 eV Total energy + Delta-G solvation = -3260.487628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34934 -39.52750 -38.77778 -36.27259 -34.72249 -33.16660 -31.99859 -31.14665 -28.26839 -27.92633 -26.62281 -25.17088 -23.80015 -22.26886 -21.53520 -20.11270 -19.04772 -17.88549 -17.19531 -17.12699 -17.10348 -16.64626 -16.44692 -16.03118 -15.66456 -15.63759 -15.03494 -14.88370 -14.70878 -14.29494 -13.97987 -13.63710 -13.51285 -13.15311 -13.12829 -13.07631 -12.76933 -12.67779 -12.29205 -12.11037 -12.02344 -11.85608 -11.23614 -11.18906 -10.92565 -10.61142 -10.30032 -9.93440 -9.75479 -9.15001 -8.54431 -6.28586 -0.21763 0.20094 1.05878 1.31181 1.43763 1.64465 1.77249 2.04960 2.21430 2.59143 2.81344 2.83756 2.96667 3.61677 3.80028 3.91219 3.99887 4.05937 4.30227 4.33904 4.43090 4.47923 4.52787 4.62111 4.62949 4.66620 4.77801 4.88773 4.94714 4.97663 5.19285 5.28570 5.30688 5.42248 5.43676 5.68375 5.82025 6.09593 6.19098 6.46481 6.87999 7.12789 8.59305 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027040 B = 0.003230 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.270744 B = 8665.867932 C = 9014.129258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.060 3.940 4 C 0.139 3.861 5 H 0.087 0.913 6 C -0.153 4.153 7 N -0.702 5.702 8 C 0.562 3.438 9 O -0.580 6.580 10 C -0.159 4.159 11 C -0.060 4.060 12 C -0.121 4.121 13 C -0.058 4.058 14 C -0.119 4.119 15 S -0.115 6.115 16 C -0.524 4.524 17 H 0.045 0.955 18 C 0.040 3.960 19 N -0.920 5.920 20 Si 0.922 3.078 21 H -0.263 1.263 22 H -0.257 1.257 23 H -0.226 1.226 24 C -0.043 4.043 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.416 0.584 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.141 0.859 37 H 0.278 0.722 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.227 -10.634 -13.652 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.017 4.017 4 C 0.035 3.965 5 H 0.105 0.895 6 C -0.211 4.211 7 N -0.355 5.355 8 C 0.350 3.650 9 O -0.461 6.461 10 C -0.164 4.164 11 C -0.078 4.078 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.230 4.230 15 S 0.119 5.881 16 C -0.670 4.670 17 H 0.064 0.936 18 C -0.165 4.165 19 N -0.558 5.558 20 Si 0.743 3.257 21 H -0.187 1.187 22 H -0.181 1.181 23 H -0.150 1.150 24 C -0.065 4.065 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.254 0.746 34 H 0.188 0.812 35 H 0.195 0.805 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.533 -10.724 -14.112 25.645 hybrid contribution -0.471 1.346 0.552 1.529 sum -19.004 -9.378 -13.561 25.160 Atomic orbital electron populations 1.22917 0.79342 1.03838 1.00901 1.87852 1.21377 1.27487 1.95628 1.22792 0.90624 0.85602 1.02706 1.21185 0.93689 0.97834 0.83778 0.89519 1.22013 1.00341 1.01104 0.97646 1.45788 1.13553 1.50826 1.25299 1.18387 0.82257 0.79944 0.84378 1.90749 1.55101 1.39804 1.60485 1.19974 0.95446 1.03726 0.97237 1.21739 0.99390 0.92857 0.93835 1.21563 0.95302 1.00761 0.96417 1.22091 0.93386 0.94076 0.98361 1.22069 1.00167 1.02752 0.98003 1.82609 1.09341 1.31596 1.64546 1.22374 0.97024 1.09181 1.38471 0.93622 1.25737 1.03491 0.94069 0.93166 1.70033 1.34280 1.16771 1.34670 0.85764 0.78704 0.81903 0.79336 1.18732 1.18081 1.14961 1.21645 0.95378 0.95398 0.94038 0.93251 0.93101 0.88589 0.91693 0.89669 0.91136 0.89947 0.94648 0.74589 0.81211 0.80510 0.84093 0.91241 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -5.32 9.56 -148.98 -1.42 -6.75 16 3 C 0.06 0.76 5.68 71.98 0.41 1.16 16 4 C 0.14 2.69 2.98 44.99 0.13 2.82 16 5 H 0.09 1.97 7.58 -2.39 -0.02 1.95 16 6 C -0.15 -2.91 9.29 71.98 0.67 -2.24 16 7 N -0.70 -15.59 5.01 -445.40 -2.23 -17.83 16 8 C 0.56 18.22 7.74 86.79 0.67 18.89 16 9 O -0.58 -23.93 16.01 -3.89 -0.06 -23.99 16 10 C -0.16 -5.29 5.87 -20.11 -0.12 -5.40 16 11 C -0.06 -1.42 9.54 22.57 0.22 -1.20 16 12 C -0.12 -2.93 10.02 22.21 0.22 -2.71 16 13 C -0.06 -1.98 9.79 22.48 0.22 -1.76 16 14 C -0.12 -5.14 5.45 22.65 0.12 -5.02 16 15 S -0.11 -5.80 19.38 -56.49 -1.09 -6.90 16 16 C -0.52 -31.82 10.01 67.94 0.68 -31.14 16 17 H 0.05 3.07 8.02 -2.91 -0.02 3.05 16 18 C 0.04 2.42 5.50 84.84 0.47 2.89 16 19 N -0.92 -57.64 13.97 21.64 0.30 -57.33 16 20 Si 0.92 44.52 27.74 68.60 1.90 46.43 16 21 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.23 -10.37 6.74 99.48 0.67 -9.70 16 24 C -0.04 -1.81 9.34 22.70 0.21 -1.60 16 25 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 1.28 7.56 -2.39 -0.02 1.27 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.42 6.85 6.41 -92.71 -0.59 6.25 16 34 H 0.17 2.34 6.40 -2.91 -0.02 2.32 16 35 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 38 H 0.11 5.12 7.65 -2.91 -0.02 5.10 16 Total: -1.00 -78.73 339.84 2.98 -75.75 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.44 Total: 14.48 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 5.15 Total: -23.86 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -1.93 Total: -75.16 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.49 Total: -30.74 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.43 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -1.09 Total: -6.90 kcal Total: -78.73 2.98 -75.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079382000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.774 kcal (2) G-P(sol) polarization free energy of solvation -78.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds