Wall clock time and date at job start Tue Mar 31 2020 07:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99381 * 2 1 4 4 C 1.53004 * 109.46750 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47324 * 184.99860 * 4 3 2 6 6 C 1.52998 * 109.46875 * 304.99754 * 4 3 2 7 7 N 1.46492 * 109.47185 * 64.99785 * 4 3 2 8 8 C 1.34784 * 120.00217 * 155.00420 * 7 4 3 9 9 O 1.21552 * 119.99611 * 359.97438 * 8 7 4 10 10 C 1.47860 * 119.99972 * 179.97438 * 8 7 4 11 11 C 1.39661 * 120.10534 * 359.97438 * 10 8 7 12 12 C 1.38047 * 120.04191 * 180.02562 * 11 10 8 13 13 C 1.38176 * 120.23812 * 359.67598 * 12 11 10 14 14 C 1.39179 * 120.20540 * 0.60009 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.69520 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31616 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46950 * 90.00202 * 20 18 16 22 22 H 1.48495 * 109.46650 * 209.99961 * 20 18 16 23 23 H 1.48498 * 109.47335 * 329.99842 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.42658 * 14 13 12 25 25 H 1.09005 * 109.47117 * 60.00398 * 1 2 3 26 26 H 1.09006 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47607 * 300.00386 * 1 2 3 28 28 H 1.09003 * 109.47348 * 60.00069 * 3 2 1 29 29 H 1.09006 * 109.47023 * 299.99614 * 3 2 1 30 30 H 1.09004 * 109.47509 * 60.00058 * 6 4 3 31 31 H 1.08998 * 109.47175 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.47527 * 299.99839 * 6 4 3 33 33 H 0.96996 * 120.00373 * 334.99555 * 7 4 3 34 34 H 1.08002 * 119.98248 * 0.02562 * 11 10 8 35 35 H 1.07993 * 119.87788 * 179.97438 * 12 11 10 36 36 H 1.08006 * 119.89818 * 180.31471 * 13 12 11 37 37 H 0.97004 * 119.99833 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9784 2.1767 0.0902 6 6 3.9780 0.3200 1.1826 7 7 3.9767 0.5641 -1.2508 8 6 5.2210 0.7940 -1.7150 9 8 5.9768 1.5168 -1.0955 10 6 5.6665 0.1671 -2.9779 11 6 4.7999 -0.6642 -3.6911 12 6 5.2174 -1.2493 -4.8697 13 6 6.4899 -1.0107 -5.3524 14 6 7.3638 -0.1886 -4.6469 15 16 8.9881 0.1058 -5.2628 16 6 9.8794 -1.1305 -4.3787 17 1 9.3500 -1.8370 -3.7567 18 6 11.2613 -1.1964 -4.4817 19 7 11.9065 -0.3357 -5.2401 20 14 12.2062 -2.5077 -3.5449 21 1 12.3338 -3.7233 -4.3881 22 1 13.5584 -1.9961 -3.2059 23 1 11.4774 -2.8458 -2.2960 24 6 6.9527 0.4039 -3.4601 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8901 30 1 3.5350 -0.6720 1.0932 31 1 5.0646 0.2343 1.1834 32 1 3.6497 0.7818 2.1138 33 1 3.3735 -0.0125 -1.7453 34 1 3.8026 -0.8494 -3.3204 35 1 4.5453 -1.8919 -5.4188 36 1 6.8091 -1.4673 -6.2777 37 1 12.8728 -0.3816 -5.3118 38 1 7.6271 1.0456 -2.9126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079382004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:36 Heat of formation + Delta-G solvation = -65.520179 kcal Electronic energy + Delta-G solvation = -20605.714925 eV Core-core repulsion = 17346.181521 eV Total energy + Delta-G solvation = -3259.533404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08930 -38.54382 -37.67229 -35.25004 -32.48793 -31.94511 -30.55279 -29.92375 -27.67906 -26.04071 -25.54881 -23.87157 -22.33131 -21.20277 -20.31026 -18.34595 -17.37730 -17.05520 -16.42013 -15.88978 -15.70226 -15.21269 -14.83263 -14.77694 -14.69807 -14.27124 -13.72110 -13.45325 -13.35932 -12.93429 -12.85658 -12.47832 -12.16758 -12.13350 -11.63287 -11.48839 -11.20030 -11.13149 -11.10220 -11.05822 -10.68109 -10.11971 -9.94297 -9.72328 -9.15796 -9.13652 -8.98126 -8.55227 -8.00075 -6.69138 -6.26614 -4.00368 1.20209 1.70088 3.06826 3.09311 3.22322 3.25689 3.30401 3.39491 3.50177 4.11955 4.29163 4.48098 4.72742 4.89104 4.90394 4.96628 5.03294 5.09714 5.13870 5.21221 5.27832 5.29037 5.35599 5.49763 5.59045 5.75541 5.85271 5.90901 6.03334 6.18054 6.28817 6.44149 6.62491 6.67187 6.71268 6.96378 7.22629 7.56936 7.59777 8.34120 8.34949 9.19303 10.80151 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.003321 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.280184 B = 8429.972969 C = 8924.315997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.052 3.948 4 C 0.147 3.853 5 H 0.101 0.899 6 C -0.160 4.160 7 N -0.724 5.724 8 C 0.564 3.436 9 O -0.536 6.536 10 C -0.154 4.154 11 C -0.089 4.089 12 C -0.141 4.141 13 C -0.056 4.056 14 C -0.107 4.107 15 S -0.036 6.036 16 C -0.519 4.519 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.871 5.871 20 Si 0.921 3.079 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.019 4.019 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.269 0.731 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.591 0.535 7.855 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.025 4.025 4 C 0.042 3.958 5 H 0.119 0.881 6 C -0.219 4.219 7 N -0.378 5.378 8 C 0.353 3.647 9 O -0.414 6.414 10 C -0.159 4.159 11 C -0.108 4.108 12 C -0.161 4.161 13 C -0.077 4.077 14 C -0.218 4.218 15 S 0.199 5.801 16 C -0.666 4.666 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.506 5.506 20 Si 0.747 3.253 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.195 1.195 24 C -0.041 4.041 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.318 1.752 7.468 22.656 hybrid contribution -0.478 -1.758 1.257 2.214 sum -21.796 -0.006 8.726 23.478 Atomic orbital electron populations 1.22758 0.80872 1.02907 1.00017 1.87903 1.19764 1.27491 1.95420 1.22889 0.93105 0.85281 1.01241 1.20999 0.91427 0.98616 0.84754 0.88136 1.22086 1.02305 1.00757 0.96725 1.45924 1.15149 1.51714 1.25012 1.18431 0.81211 0.80316 0.84768 1.90764 1.53467 1.37848 1.59275 1.19865 0.96475 1.03221 0.96359 1.21154 0.98212 0.96262 0.95183 1.21055 0.96768 1.01476 0.96817 1.21953 0.92581 0.94143 0.98995 1.22840 1.02944 0.98958 0.97033 1.83589 0.91094 1.48780 1.56655 1.22840 0.93691 1.16426 1.33674 0.90617 1.25003 0.96516 0.96646 0.95424 1.69988 1.08961 1.34841 1.36811 0.86119 0.78759 0.80562 0.79880 1.20175 1.20660 1.19543 1.21950 0.93345 0.95028 0.93731 0.94000 0.89512 0.94042 0.91714 0.92451 0.91517 0.91853 0.91977 0.76141 0.86470 0.85885 0.85102 0.92074 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.28 9.55 -35.23 -0.34 -3.62 16 3 C 0.05 0.40 5.68 37.16 0.21 0.61 16 4 C 0.15 1.55 2.98 -67.93 -0.20 1.35 16 5 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 6 C -0.16 -1.72 9.29 37.16 0.35 -1.38 16 7 N -0.72 -8.89 5.01 -54.75 -0.27 -9.17 16 8 C 0.56 9.32 7.74 -12.32 -0.10 9.23 16 9 O -0.54 -10.69 16.00 5.32 0.09 -10.60 16 10 C -0.15 -2.67 5.87 -105.00 -0.62 -3.29 16 11 C -0.09 -1.26 9.54 -39.12 -0.37 -1.64 16 12 C -0.14 -2.07 10.02 -39.67 -0.40 -2.47 16 13 C -0.06 -1.01 9.79 -39.25 -0.38 -1.40 16 14 C -0.11 -2.32 5.45 -39.00 -0.21 -2.54 16 15 S -0.04 -0.93 21.40 -107.50 -2.30 -3.23 16 16 C -0.52 -14.81 9.46 30.92 0.29 -14.52 16 17 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 19 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 20 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.73 7.56 -51.93 -0.39 0.33 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 4.17 6.41 -40.82 -0.26 3.91 16 34 H 0.12 1.23 6.40 -52.49 -0.34 0.89 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.14 3.11 7.65 -52.49 -0.40 2.71 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -33.13 342.53 -7.87 -41.00 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.13 Total: 2.27 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.78 Total: -13.53 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.46 Total: -34.12 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.25 Total: -14.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.13 -7.87 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079382004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.522 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds