Wall clock time and date at job start Tue Mar 31 2020 07:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99381 * 2 1 4 4 C 1.53004 * 109.46750 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47324 * 184.99860 * 4 3 2 6 6 C 1.52998 * 109.46875 * 304.99754 * 4 3 2 7 7 N 1.46492 * 109.47185 * 64.99785 * 4 3 2 8 8 C 1.34784 * 120.00217 * 155.00420 * 7 4 3 9 9 O 1.21552 * 119.99611 * 359.97438 * 8 7 4 10 10 C 1.47860 * 119.99972 * 179.97438 * 8 7 4 11 11 C 1.39661 * 120.10534 * 359.97438 * 10 8 7 12 12 C 1.38047 * 120.04191 * 180.02562 * 11 10 8 13 13 C 1.38176 * 120.23812 * 359.67598 * 12 11 10 14 14 C 1.39179 * 120.20540 * 0.60009 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.69520 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31616 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46950 * 90.00202 * 20 18 16 22 22 H 1.48495 * 109.46650 * 209.99961 * 20 18 16 23 23 H 1.48498 * 109.47335 * 329.99842 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.42658 * 14 13 12 25 25 H 1.09005 * 109.47117 * 60.00398 * 1 2 3 26 26 H 1.09006 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47607 * 300.00386 * 1 2 3 28 28 H 1.09003 * 109.47348 * 60.00069 * 3 2 1 29 29 H 1.09006 * 109.47023 * 299.99614 * 3 2 1 30 30 H 1.09004 * 109.47509 * 60.00058 * 6 4 3 31 31 H 1.08998 * 109.47175 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.47527 * 299.99839 * 6 4 3 33 33 H 0.96996 * 120.00373 * 334.99555 * 7 4 3 34 34 H 1.08002 * 119.98248 * 0.02562 * 11 10 8 35 35 H 1.07993 * 119.87788 * 179.97438 * 12 11 10 36 36 H 1.08006 * 119.89818 * 180.31471 * 13 12 11 37 37 H 0.97004 * 119.99833 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9784 2.1767 0.0902 6 6 3.9780 0.3200 1.1826 7 7 3.9767 0.5641 -1.2508 8 6 5.2210 0.7940 -1.7150 9 8 5.9768 1.5168 -1.0955 10 6 5.6665 0.1671 -2.9779 11 6 4.7999 -0.6642 -3.6911 12 6 5.2174 -1.2493 -4.8697 13 6 6.4899 -1.0107 -5.3524 14 6 7.3638 -0.1886 -4.6469 15 16 8.9881 0.1058 -5.2628 16 6 9.8794 -1.1305 -4.3787 17 1 9.3500 -1.8370 -3.7567 18 6 11.2613 -1.1964 -4.4817 19 7 11.9065 -0.3357 -5.2401 20 14 12.2062 -2.5077 -3.5449 21 1 12.3338 -3.7233 -4.3881 22 1 13.5584 -1.9961 -3.2059 23 1 11.4774 -2.8458 -2.2960 24 6 6.9527 0.4039 -3.4601 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8901 30 1 3.5350 -0.6720 1.0932 31 1 5.0646 0.2343 1.1834 32 1 3.6497 0.7818 2.1138 33 1 3.3735 -0.0125 -1.7453 34 1 3.8026 -0.8494 -3.3204 35 1 4.5453 -1.8919 -5.4188 36 1 6.8091 -1.4673 -6.2777 37 1 12.8728 -0.3816 -5.3118 38 1 7.6271 1.0456 -2.9126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079382004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:36 Heat of formation + Delta-G solvation = -88.087915 kcal Electronic energy + Delta-G solvation = -20606.693536 eV Core-core repulsion = 17346.181521 eV Total energy + Delta-G solvation = -3260.512014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.32956 -39.49567 -38.76110 -36.26462 -34.66061 -33.13912 -31.94974 -31.11521 -28.26533 -27.75036 -26.61864 -25.13510 -23.71688 -22.24013 -21.51030 -20.03835 -19.03422 -17.87367 -17.14059 -17.09269 -16.93995 -16.65527 -16.43130 -16.02482 -15.67550 -15.60225 -15.13550 -14.71463 -14.60093 -14.28139 -13.89395 -13.52806 -13.26997 -13.15825 -13.04617 -12.96905 -12.77634 -12.64915 -12.40103 -12.10276 -12.02819 -11.74895 -11.25795 -11.11547 -10.76241 -10.59964 -10.28441 -9.90563 -9.70148 -8.81060 -8.39883 -6.19887 -0.18301 0.25380 1.29019 1.36966 1.45499 1.64629 1.79028 2.06591 2.24114 2.78408 2.84730 2.93103 3.41203 3.63693 3.81158 3.94656 4.01962 4.06851 4.32503 4.36694 4.46675 4.48701 4.53787 4.62753 4.66604 4.67302 4.77151 4.91873 4.95028 4.97347 5.22598 5.28948 5.32415 5.37983 5.43754 5.50366 5.86237 6.15191 6.20655 6.47829 7.00466 7.14091 8.67290 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.003321 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.280184 B = 8429.972969 C = 8924.315997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.061 3.939 4 C 0.140 3.860 5 H 0.090 0.910 6 C -0.155 4.155 7 N -0.702 5.702 8 C 0.562 3.438 9 O -0.581 6.581 10 C -0.158 4.158 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.063 4.063 14 C -0.129 4.129 15 S -0.094 6.094 16 C -0.536 4.536 17 H 0.066 0.934 18 C 0.020 3.980 19 N -0.906 5.906 20 Si 0.992 3.008 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.045 4.045 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.083 0.917 33 H 0.416 0.584 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.136 0.864 37 H 0.274 0.726 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.279 -1.352 8.587 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.016 4.016 4 C 0.036 3.964 5 H 0.108 0.892 6 C -0.213 4.213 7 N -0.355 5.355 8 C 0.351 3.649 9 O -0.462 6.462 10 C -0.163 4.163 11 C -0.082 4.082 12 C -0.140 4.140 13 C -0.084 4.084 14 C -0.240 4.240 15 S 0.140 5.860 16 C -0.683 4.683 17 H 0.085 0.915 18 C -0.186 4.186 19 N -0.542 5.542 20 Si 0.814 3.186 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.067 4.067 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.254 0.746 34 H 0.187 0.813 35 H 0.193 0.807 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.065 -0.147 8.193 26.371 hybrid contribution 0.436 -1.158 1.068 1.634 sum -24.629 -1.304 9.261 26.345 Atomic orbital electron populations 1.22917 0.79317 1.03776 1.00968 1.87862 1.21415 1.27623 1.95639 1.22797 0.90446 0.85555 1.02837 1.21186 0.93811 0.97794 0.83622 0.89249 1.22029 1.00170 1.01171 0.97947 1.45789 1.13527 1.50832 1.25318 1.18401 0.82183 0.79941 0.84418 1.90747 1.55050 1.39961 1.60438 1.19981 0.95477 1.03769 0.97044 1.21694 0.99417 0.93152 0.93911 1.21549 0.95394 1.00495 0.96522 1.22078 0.93747 0.93502 0.99024 1.22496 1.00648 1.02257 0.98604 1.83460 0.95564 1.49424 1.57533 1.23060 0.94569 1.16916 1.33799 0.91549 1.26010 0.97368 0.98965 0.96215 1.70106 1.09427 1.36590 1.38127 0.85045 0.77270 0.77888 0.78406 1.18582 1.19654 1.19416 1.21630 0.94999 0.96088 0.93978 0.93052 0.88768 0.93103 0.89685 0.91319 0.91326 0.94986 0.89858 0.74591 0.81272 0.80676 0.84608 0.91668 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.41 -5.36 9.55 -148.98 -1.42 -6.78 16 3 C 0.06 0.73 5.68 71.98 0.41 1.14 16 4 C 0.14 2.70 2.98 44.99 0.13 2.83 16 5 H 0.09 1.97 7.58 -2.39 -0.02 1.95 16 6 C -0.15 -3.12 9.29 71.98 0.67 -2.45 16 7 N -0.70 -15.64 5.01 -445.40 -2.23 -17.88 16 8 C 0.56 18.39 7.74 86.79 0.67 19.06 16 9 O -0.58 -24.15 16.00 -3.88 -0.06 -24.22 16 10 C -0.16 -5.34 5.87 -20.11 -0.12 -5.46 16 11 C -0.06 -1.53 9.54 22.57 0.22 -1.32 16 12 C -0.12 -3.00 10.02 22.21 0.22 -2.78 16 13 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 14 C -0.13 -5.81 5.45 22.65 0.12 -5.69 16 15 S -0.09 -5.25 21.40 -56.49 -1.21 -6.46 16 16 C -0.54 -32.02 9.46 67.94 0.64 -31.38 16 17 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 18 C 0.02 1.14 5.49 84.84 0.47 1.61 16 19 N -0.91 -55.33 13.22 21.64 0.29 -55.05 16 20 Si 0.99 45.32 29.55 68.60 2.03 47.35 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 C -0.05 -1.97 9.34 22.70 0.21 -1.75 16 25 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 26 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 1.35 7.56 -2.38 -0.02 1.33 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.42 6.88 6.41 -92.71 -0.59 6.28 16 34 H 0.17 2.38 6.40 -2.91 -0.02 2.37 16 35 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.10 5.09 7.65 -2.91 -0.02 5.07 16 Total: -1.00 -78.43 342.53 2.98 -75.46 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.47 Total: 14.31 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 5.12 Total: -26.73 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.95 Total: -72.92 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.49 Total: -31.00 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.21 Total: -6.46 kcal Total: -78.43 2.98 -75.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079382004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.633 kcal (2) G-P(sol) polarization free energy of solvation -78.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds