Wall clock time and date at job start Tue Mar 31 2020 07:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46720 * 2 1 4 4 O 1.42904 * 109.46980 * 240.00157 * 2 1 3 5 5 C 1.52998 * 109.47092 * 120.00154 * 2 1 3 6 6 C 1.53003 * 109.46847 * 185.00149 * 5 2 1 7 7 N 1.46495 * 109.47075 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00355 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99552 * 0.02562 * 8 7 6 10 10 C 1.47858 * 120.00338 * 179.97438 * 8 7 6 11 11 C 1.39677 * 120.10191 * 359.72610 * 10 8 7 12 12 C 1.38042 * 120.03969 * 179.74298 * 11 10 8 13 13 C 1.38173 * 120.24086 * 0.55493 * 12 11 10 14 14 C 1.39181 * 120.20565 * 359.70024 * 13 12 11 15 15 S 1.76198 * 120.02149 * 179.97438 * 14 13 12 16 16 C 1.76196 * 100.00213 * 265.52635 * 15 14 13 17 17 H 1.07998 * 119.99930 * 5.12446 * 16 15 14 18 18 C 1.38722 * 120.00083 * 185.11873 * 16 15 14 19 19 N 1.31630 * 120.00422 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00196 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47673 * 119.99764 * 20 18 16 23 23 H 1.48506 * 109.47039 * 240.00197 * 20 18 16 24 24 C 1.38874 * 119.95620 * 0.02562 * 14 13 12 25 25 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47007 * 299.99966 * 1 2 3 27 27 H 1.08999 * 109.47095 * 60.00009 * 1 2 3 28 28 H 0.96701 * 114.00212 * 299.99897 * 4 2 1 29 29 H 1.09001 * 109.47061 * 304.99810 * 5 2 1 30 30 H 1.09002 * 109.47284 * 64.99884 * 5 2 1 31 31 H 1.09001 * 109.47013 * 299.99690 * 6 5 2 32 32 H 1.09002 * 109.47395 * 59.99803 * 6 5 2 33 33 H 0.97010 * 120.00195 * 0.02562 * 7 6 5 34 34 H 1.08005 * 119.97653 * 359.97438 * 11 10 8 35 35 H 1.07998 * 119.87865 * 180.25427 * 12 11 10 36 36 H 1.08005 * 119.89623 * 179.72399 * 13 12 11 37 37 H 0.96997 * 120.00383 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.11753 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6132 1.3136 7 7 4.0532 -1.3033 2.5100 8 6 5.3741 -1.3395 2.7753 9 8 6.1602 -0.7990 2.0220 10 6 5.8669 -2.0355 3.9831 11 6 4.9649 -2.6514 4.8538 12 6 5.4268 -3.3054 5.9783 13 6 6.7802 -3.3443 6.2540 14 6 7.6875 -2.7294 5.3962 15 16 9.4123 -2.7814 5.7529 16 6 9.5949 -1.2501 6.6050 17 1 8.7258 -0.6485 6.8266 18 6 10.8549 -0.8173 6.9915 19 7 11.9143 -1.5503 6.7211 20 14 11.0485 0.8058 7.8956 21 1 9.7150 1.4343 8.0755 22 1 11.6646 0.5620 9.2245 23 1 11.9196 1.7121 7.1048 24 6 7.2325 -2.0740 4.2596 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7211 -1.5952 -1.2330 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.9995 -1.0728 0.4259 32 1 3.8533 0.4370 1.3573 33 1 3.4259 -1.7350 3.1111 34 1 3.9057 -2.6191 4.6451 35 1 4.7274 -3.7842 6.6475 36 1 7.1351 -3.8537 7.1378 37 1 12.7953 -1.2479 6.9916 38 1 7.9343 -1.5964 3.5919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079907078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:35 Heat of formation + Delta-G solvation = -79.966064 kcal Electronic energy + Delta-G solvation = -20139.869429 eV Core-core repulsion = 16879.709604 eV Total energy + Delta-G solvation = -3260.159824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98021 -38.44884 -37.71654 -35.10025 -32.50425 -32.40899 -30.99162 -30.54117 -29.00149 -25.56962 -24.52383 -22.90939 -22.15583 -21.86470 -20.34552 -18.35465 -17.39801 -16.75276 -16.42715 -16.15349 -15.65162 -15.17023 -15.08141 -14.84799 -14.48261 -14.10189 -13.77125 -13.67779 -13.40797 -13.13814 -12.88223 -12.47705 -12.28287 -12.01530 -11.65370 -11.60168 -11.23928 -11.15068 -11.11665 -11.09559 -10.70231 -10.55169 -9.95866 -9.74754 -9.17131 -9.15978 -9.00683 -8.58584 -8.02941 -6.70935 -6.28333 -4.02248 1.16482 1.66256 3.04102 3.08145 3.20015 3.23639 3.29388 3.47658 3.93968 4.09083 4.26441 4.31175 4.44817 4.64380 4.81825 4.89037 4.97586 5.07281 5.08944 5.17097 5.23419 5.30268 5.46723 5.47857 5.61173 5.70349 5.77653 5.80807 5.87338 5.99416 6.24782 6.35241 6.58538 6.62882 6.93130 7.18793 7.23562 7.48672 7.58187 8.30186 8.33340 9.17624 10.78471 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.002880 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.759787 B = 9721.271759 C =10205.388769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.102 0.898 4 O -0.561 6.561 5 C -0.164 4.164 6 C 0.122 3.878 7 N -0.735 5.735 8 C 0.562 3.438 9 O -0.533 6.533 10 C -0.154 4.154 11 C -0.091 4.091 12 C -0.141 4.141 13 C -0.055 4.055 14 C -0.106 4.106 15 S -0.035 6.035 16 C -0.518 4.518 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.278 1.278 24 C -0.019 4.019 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.375 0.625 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.269 0.731 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.326 -1.235 -7.794 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.120 0.880 4 O -0.366 6.366 5 C -0.203 4.203 6 C -0.001 4.001 7 N -0.388 5.388 8 C 0.350 3.650 9 O -0.410 6.410 10 C -0.159 4.159 11 C -0.110 4.110 12 C -0.161 4.161 13 C -0.077 4.077 14 C -0.217 4.217 15 S 0.199 5.801 16 C -0.666 4.666 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.040 4.040 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.222 0.778 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.427 -1.061 -8.689 23.146 hybrid contribution -1.497 1.185 1.339 2.332 sum -22.925 0.124 -7.350 24.074 Atomic orbital electron populations 1.22503 0.96119 1.02650 1.02989 1.21844 0.92873 0.96968 0.83813 0.87993 1.86639 1.77138 1.29118 1.43730 1.22556 0.95722 1.02088 0.99887 1.21266 0.92822 0.97908 0.88125 1.45911 1.07618 1.58075 1.27195 1.18416 0.81792 0.79459 0.85286 1.90782 1.55323 1.45459 1.49395 1.19873 0.94952 1.04489 0.96624 1.21122 0.98011 0.97214 0.94629 1.21052 0.95882 1.01401 0.97772 1.21961 0.92265 0.95648 0.97786 1.22857 1.03450 0.99388 0.96000 1.83610 0.93779 1.29393 1.73308 1.22874 0.95972 1.06286 1.41460 0.90577 1.25009 0.94719 0.98090 0.95816 1.69996 0.98712 1.37430 1.44407 0.86063 0.78475 0.81736 0.79001 1.19507 1.20479 1.20421 1.21961 0.93610 0.93197 0.95280 0.92237 0.91426 0.91597 0.77804 0.90234 0.90843 0.90713 0.91481 0.76737 0.86597 0.85871 0.85058 0.92101 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.85 9.54 37.16 0.35 -0.50 16 2 C 0.10 0.65 3.59 -26.73 -0.10 0.56 16 3 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 4 O -0.56 -4.38 12.88 -35.23 -0.45 -4.83 16 5 C -0.16 -1.00 5.01 -26.73 -0.13 -1.13 16 6 C 0.12 1.24 5.57 -4.04 -0.02 1.22 16 7 N -0.73 -8.43 5.51 -61.25 -0.34 -8.77 16 8 C 0.56 9.27 7.77 -12.32 -0.10 9.17 16 9 O -0.53 -10.93 16.34 5.32 0.09 -10.84 16 10 C -0.15 -2.63 5.87 -105.00 -0.62 -3.24 16 11 C -0.09 -1.23 9.54 -39.12 -0.37 -1.60 16 12 C -0.14 -2.01 10.02 -39.68 -0.40 -2.40 16 13 C -0.06 -0.99 9.79 -39.26 -0.38 -1.38 16 14 C -0.11 -2.29 5.45 -39.00 -0.21 -2.50 16 15 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 16 C -0.52 -14.73 9.46 30.91 0.29 -14.43 16 17 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 18 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 19 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 20 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.37 1.60 9.05 45.56 0.41 2.01 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 3.34 6.50 -40.82 -0.27 3.07 16 34 H 0.12 1.08 6.40 -52.48 -0.34 0.74 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.14 3.12 7.65 -52.49 -0.40 2.72 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -34.50 343.29 -8.61 -43.11 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.35 Total: 2.71 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.14 Total: -15.04 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.40 Total: -33.62 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.37 Total: -15.68 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.50 -8.61 -43.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079907078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.856 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds