Wall clock time and date at job start Tue Mar 31 2020 07:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46720 * 2 1 4 4 O 1.42904 * 109.46980 * 240.00157 * 2 1 3 5 5 C 1.52998 * 109.47092 * 120.00154 * 2 1 3 6 6 C 1.53003 * 109.46847 * 185.00149 * 5 2 1 7 7 N 1.46495 * 109.47075 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00355 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99552 * 0.02562 * 8 7 6 10 10 C 1.47858 * 120.00338 * 179.97438 * 8 7 6 11 11 C 1.39677 * 120.10191 * 359.72610 * 10 8 7 12 12 C 1.38042 * 120.03969 * 179.74298 * 11 10 8 13 13 C 1.38173 * 120.24086 * 0.55493 * 12 11 10 14 14 C 1.39181 * 120.20565 * 359.70024 * 13 12 11 15 15 S 1.76198 * 120.02149 * 179.97438 * 14 13 12 16 16 C 1.76196 * 100.00213 * 265.52635 * 15 14 13 17 17 H 1.07998 * 119.99930 * 5.12446 * 16 15 14 18 18 C 1.38722 * 120.00083 * 185.11873 * 16 15 14 19 19 N 1.31630 * 120.00422 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00196 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47673 * 119.99764 * 20 18 16 23 23 H 1.48506 * 109.47039 * 240.00197 * 20 18 16 24 24 C 1.38874 * 119.95620 * 0.02562 * 14 13 12 25 25 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47007 * 299.99966 * 1 2 3 27 27 H 1.08999 * 109.47095 * 60.00009 * 1 2 3 28 28 H 0.96701 * 114.00212 * 299.99897 * 4 2 1 29 29 H 1.09001 * 109.47061 * 304.99810 * 5 2 1 30 30 H 1.09002 * 109.47284 * 64.99884 * 5 2 1 31 31 H 1.09001 * 109.47013 * 299.99690 * 6 5 2 32 32 H 1.09002 * 109.47395 * 59.99803 * 6 5 2 33 33 H 0.97010 * 120.00195 * 0.02562 * 7 6 5 34 34 H 1.08005 * 119.97653 * 359.97438 * 11 10 8 35 35 H 1.07998 * 119.87865 * 180.25427 * 12 11 10 36 36 H 1.08005 * 119.89623 * 179.72399 * 13 12 11 37 37 H 0.96997 * 120.00383 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.11753 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6132 1.3136 7 7 4.0532 -1.3033 2.5100 8 6 5.3741 -1.3395 2.7753 9 8 6.1602 -0.7990 2.0220 10 6 5.8669 -2.0355 3.9831 11 6 4.9649 -2.6514 4.8538 12 6 5.4268 -3.3054 5.9783 13 6 6.7802 -3.3443 6.2540 14 6 7.6875 -2.7294 5.3962 15 16 9.4123 -2.7814 5.7529 16 6 9.5949 -1.2501 6.6050 17 1 8.7258 -0.6485 6.8266 18 6 10.8549 -0.8173 6.9915 19 7 11.9143 -1.5503 6.7211 20 14 11.0485 0.8058 7.8956 21 1 9.7150 1.4343 8.0755 22 1 11.6646 0.5620 9.2245 23 1 11.9196 1.7121 7.1048 24 6 7.2325 -2.0740 4.2596 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7211 -1.5952 -1.2330 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.9995 -1.0728 0.4259 32 1 3.8533 0.4370 1.3573 33 1 3.4259 -1.7350 3.1111 34 1 3.9057 -2.6191 4.6451 35 1 4.7274 -3.7842 6.6475 36 1 7.1351 -3.8537 7.1378 37 1 12.7953 -1.2479 6.9916 38 1 7.9343 -1.5964 3.5919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079907078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:34 Heat of formation + Delta-G solvation = -106.013394 kcal Electronic energy + Delta-G solvation = -20140.998926 eV Core-core repulsion = 16879.709604 eV Total energy + Delta-G solvation = -3261.289321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24763 -39.33594 -38.74847 -36.14503 -34.66579 -33.22117 -32.11830 -31.87658 -29.72956 -27.76044 -25.51459 -24.04418 -23.33388 -22.51900 -21.58095 -20.02048 -19.03107 -17.52712 -17.19518 -17.06470 -16.94931 -16.82886 -16.57182 -16.15001 -15.68299 -15.30881 -14.85540 -14.68588 -14.62699 -14.46489 -13.81405 -13.71363 -13.26500 -13.09041 -12.99202 -12.82028 -12.66690 -12.57955 -12.39305 -12.25115 -11.74979 -11.69525 -11.33234 -11.23295 -10.91960 -10.73464 -10.29427 -9.90250 -9.70419 -8.81835 -8.40557 -6.20703 -0.19022 0.24965 1.28613 1.35571 1.45697 1.64125 1.78520 2.04818 2.23469 2.79739 2.92427 3.40555 3.49933 3.64016 3.79898 3.93684 3.98149 4.03185 4.13380 4.35185 4.42226 4.43984 4.49210 4.61089 4.69046 4.86329 4.91596 4.93903 5.07330 5.21960 5.24825 5.30819 5.32887 5.35666 5.37506 5.50475 5.86329 6.14713 6.45971 6.89651 6.99796 7.13119 8.66818 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.002880 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.759787 B = 9721.271759 C =10205.388769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H 0.089 0.911 4 O -0.586 6.586 5 C -0.149 4.149 6 C 0.120 3.880 7 N -0.706 5.706 8 C 0.558 3.442 9 O -0.586 6.586 10 C -0.158 4.158 11 C -0.061 4.061 12 C -0.120 4.120 13 C -0.063 4.063 14 C -0.129 4.129 15 S -0.097 6.097 16 C -0.534 4.534 17 H 0.067 0.933 18 C 0.018 3.982 19 N -0.906 5.906 20 Si 0.994 3.006 21 H -0.266 1.266 22 H -0.264 1.264 23 H -0.273 1.273 24 C -0.047 4.047 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.389 0.611 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.418 0.582 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.136 0.864 37 H 0.274 0.726 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.891 -1.405 -6.517 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.042 3.958 3 H 0.107 0.893 4 O -0.394 6.394 5 C -0.187 4.187 6 C -0.003 4.003 7 N -0.359 5.359 8 C 0.346 3.654 9 O -0.467 6.467 10 C -0.163 4.163 11 C -0.080 4.080 12 C -0.139 4.139 13 C -0.084 4.084 14 C -0.240 4.240 15 S 0.137 5.863 16 C -0.682 4.682 17 H 0.085 0.915 18 C -0.187 4.187 19 N -0.543 5.543 20 Si 0.815 3.185 21 H -0.190 1.190 22 H -0.189 1.189 23 H -0.198 1.198 24 C -0.069 4.069 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.238 0.762 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.257 0.743 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -26.059 -1.267 -7.403 27.120 hybrid contribution -0.262 1.170 0.850 1.470 sum -26.321 -0.097 -6.553 27.125 Atomic orbital electron populations 1.22426 0.94384 1.03570 1.03166 1.21887 0.94116 0.96321 0.83463 0.89310 1.86608 1.77746 1.30459 1.44572 1.22482 0.91953 1.03720 1.00540 1.21369 0.95824 0.96484 0.86670 1.45693 1.05965 1.56721 1.27508 1.18468 0.83102 0.79071 0.84726 1.90764 1.57096 1.47850 1.51032 1.19970 0.93770 1.04883 0.97683 1.21735 1.00182 0.93599 0.92453 1.21575 0.94514 0.99724 0.98096 1.22092 0.93764 0.95235 0.97291 1.22494 1.00545 1.02961 0.98034 1.83489 0.99922 1.29192 1.73675 1.23083 0.96104 1.06969 1.41995 0.91495 1.26029 0.94198 1.01926 0.96551 1.70116 0.99282 1.39354 1.45530 0.84981 0.78592 0.76831 0.78070 1.18995 1.18906 1.19822 1.21628 0.95263 0.94811 0.95203 0.90919 0.90391 0.92316 0.76166 0.88247 0.88625 0.92598 0.93150 0.74313 0.80564 0.80456 0.84652 0.91685 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.54 71.98 0.69 -0.42 16 2 C 0.10 1.05 3.59 30.60 0.11 1.16 16 3 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 4 O -0.59 -8.37 12.88 -148.98 -1.92 -10.29 16 5 C -0.15 -1.27 5.01 30.59 0.15 -1.12 16 6 C 0.12 2.23 5.57 86.38 0.48 2.72 16 7 N -0.71 -14.11 5.51 -465.97 -2.57 -16.67 16 8 C 0.56 18.02 7.77 86.79 0.67 18.69 16 9 O -0.59 -25.16 16.34 -3.87 -0.06 -25.22 16 10 C -0.16 -5.18 5.87 -20.11 -0.12 -5.30 16 11 C -0.06 -1.35 9.54 22.57 0.22 -1.14 16 12 C -0.12 -2.80 10.02 22.21 0.22 -2.58 16 13 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 14 C -0.13 -5.77 5.45 22.65 0.12 -5.64 16 15 S -0.10 -5.41 21.41 -56.49 -1.21 -6.62 16 16 C -0.53 -31.78 9.46 67.94 0.64 -31.14 16 17 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 18 C 0.02 1.05 5.49 84.84 0.47 1.52 16 19 N -0.91 -55.30 13.22 21.63 0.29 -55.02 16 20 Si 0.99 45.18 29.55 68.60 2.03 47.20 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C -0.05 -2.04 9.34 22.70 0.21 -1.83 16 25 H 0.07 0.27 8.14 -2.38 -0.02 0.26 16 26 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.39 2.57 9.05 -74.06 -0.67 1.90 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.42 4.68 6.50 -92.70 -0.60 4.08 16 34 H 0.18 1.80 6.40 -2.91 -0.02 1.78 16 35 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.10 4.98 7.65 -2.91 -0.02 4.95 16 Total: -1.00 -83.51 343.29 0.46 -83.05 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.19 Total: 10.59 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 4.09 Total: -27.02 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -2.28 Total: -71.69 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.98 Total: -35.51 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -1.21 Total: -6.62 kcal Total: -83.51 0.46 -83.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079907078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.959 kcal (2) G-P(sol) polarization free energy of solvation -83.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds