Wall clock time and date at job start Tue Mar 31 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46743 * 2 1 4 4 O 1.42897 * 109.47437 * 120.00461 * 2 1 3 5 5 C 1.52997 * 109.46588 * 240.00684 * 2 1 3 6 6 C 1.53003 * 109.47021 * 174.99845 * 5 2 1 7 7 N 1.46498 * 109.47551 * 179.97438 * 6 5 2 8 8 C 1.34774 * 120.00348 * 180.02562 * 7 6 5 9 9 O 1.21549 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.47867 * 120.00079 * 180.02562 * 8 7 6 11 11 C 1.39669 * 120.09925 * 0.02562 * 10 8 7 12 12 C 1.38043 * 120.03800 * 179.97438 * 11 10 8 13 13 C 1.38176 * 120.24168 * 359.75416 * 12 11 10 14 14 C 1.39179 * 120.20357 * 0.50266 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.76778 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31631 * 119.99738 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46962 * 89.99772 * 20 18 16 22 22 H 1.48502 * 109.47274 * 210.00042 * 20 18 16 23 23 H 1.48499 * 109.47299 * 330.00031 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.49916 * 14 13 12 25 25 H 1.09006 * 109.47232 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46964 * 299.99130 * 1 2 3 27 27 H 1.08997 * 109.47616 * 59.99718 * 1 2 3 28 28 H 0.96704 * 114.00042 * 59.99960 * 4 2 1 29 29 H 1.08994 * 109.47694 * 54.99367 * 5 2 1 30 30 H 1.09007 * 109.47292 * 294.99093 * 5 2 1 31 31 H 1.09003 * 109.47129 * 59.99499 * 6 5 2 32 32 H 1.09002 * 109.47130 * 299.99974 * 6 5 2 33 33 H 0.97008 * 119.99747 * 359.97438 * 7 6 5 34 34 H 1.08002 * 119.98588 * 359.96545 * 11 10 8 35 35 H 1.08000 * 119.87868 * 180.02562 * 12 11 10 36 36 H 1.08005 * 119.89464 * 180.25271 * 13 12 11 37 37 H 0.96995 * 120.00040 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.12339 * 180.23002 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7211 -1.2493 6 6 3.5647 -0.6132 -1.3139 7 7 4.0531 -1.3041 -2.5098 8 6 5.3740 -1.3404 -2.7750 9 8 6.1601 -0.7994 -2.0221 10 6 5.8668 -2.0374 -3.9824 11 6 4.9653 -2.6583 -4.8498 12 6 5.4267 -3.3082 -5.9769 13 6 6.7797 -3.3433 -6.2550 14 6 7.6875 -2.7325 -5.3948 15 16 9.4122 -2.7855 -5.7510 16 6 9.8787 -4.1910 -4.7963 17 1 9.1242 -4.7740 -4.2890 18 6 11.2154 -4.5490 -4.6962 19 7 11.5638 -5.5993 -3.9834 20 14 12.5205 -3.5406 -5.5730 21 1 12.9992 -2.4607 -4.6729 22 1 13.6598 -4.4188 -5.9420 23 1 11.9403 -2.9404 -6.8011 24 6 7.2324 -2.0764 -4.2585 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.7211 -1.5953 1.2327 29 1 1.6052 -0.2616 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 3.9994 -1.0727 -0.4262 32 1 3.8531 0.4371 -1.3575 33 1 3.4258 -1.7362 -3.1105 34 1 3.9065 -2.6302 -4.6385 35 1 4.7272 -3.7871 -6.6460 36 1 7.1342 -3.8499 -7.1406 37 1 12.4983 -5.8494 -3.9131 38 1 7.9341 -1.5983 -3.5912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079907082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:37 Heat of formation + Delta-G solvation = -78.589139 kcal Electronic energy + Delta-G solvation = -20158.201467 eV Core-core repulsion = 16898.101351 eV Total energy + Delta-G solvation = -3260.100116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02177 -38.46607 -37.77438 -35.11673 -32.49573 -32.42313 -31.05145 -30.63441 -29.02497 -25.67835 -24.55767 -22.98063 -22.22690 -21.88703 -20.40511 -18.44403 -17.36765 -16.75502 -16.43053 -16.17895 -15.70963 -15.26479 -15.15019 -14.91070 -14.53414 -14.13997 -13.78451 -13.65301 -13.45150 -13.09231 -12.90904 -12.50945 -12.37212 -12.06391 -11.90336 -11.62224 -11.35890 -11.23801 -11.19904 -11.09521 -10.63311 -10.54842 -9.93854 -9.79153 -9.24078 -9.15271 -9.07850 -8.65117 -8.16527 -7.13475 -6.32645 -4.08221 1.09814 1.58157 2.85101 3.03475 3.09465 3.27841 3.38894 3.50339 3.94503 4.06645 4.26587 4.30909 4.44287 4.64136 4.79107 4.88596 4.89947 4.95197 5.03309 5.06304 5.16494 5.17482 5.30127 5.45735 5.60496 5.64175 5.77014 5.77641 5.79235 5.92434 6.17174 6.32936 6.50819 6.55684 6.82251 7.09915 7.24700 7.45866 7.91569 8.27274 8.44925 9.11174 10.76822 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026725 B = 0.002876 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.453557 B = 9731.825601 C =10270.833992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.102 0.898 4 O -0.561 6.561 5 C -0.165 4.165 6 C 0.122 3.878 7 N -0.734 5.734 8 C 0.562 3.438 9 O -0.532 6.532 10 C -0.153 4.153 11 C -0.086 4.086 12 C -0.140 4.140 13 C -0.052 4.052 14 C -0.085 4.085 15 S -0.112 6.112 16 C -0.509 4.509 17 H 0.091 0.909 18 C 0.095 3.905 19 N -0.876 5.876 20 Si 0.858 3.142 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.239 1.239 24 C -0.017 4.017 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.375 0.625 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.272 0.728 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.009 8.218 1.445 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.120 0.880 4 O -0.366 6.366 5 C -0.203 4.203 6 C -0.001 4.001 7 N -0.387 5.387 8 C 0.351 3.649 9 O -0.409 6.409 10 C -0.157 4.157 11 C -0.106 4.106 12 C -0.159 4.159 13 C -0.073 4.073 14 C -0.196 4.196 15 S 0.122 5.878 16 C -0.656 4.656 17 H 0.109 0.891 18 C -0.114 4.114 19 N -0.512 5.512 20 Si 0.683 3.317 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.163 1.163 24 C -0.038 4.038 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.223 0.777 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.303 9.755 1.519 23.479 hybrid contribution -0.757 -1.361 0.088 1.560 sum -22.060 8.394 1.607 23.657 Atomic orbital electron populations 1.22504 0.96124 1.02678 1.02963 1.21837 0.92867 0.96940 0.83843 0.88023 1.86637 1.77133 1.29167 1.43695 1.22558 0.95683 1.02154 0.99874 1.21274 0.92860 0.97832 0.88165 1.45901 1.07574 1.57993 1.27264 1.18377 0.81830 0.79488 0.85249 1.90787 1.55286 1.45494 1.49302 1.19849 0.94791 1.04471 0.96632 1.21161 0.98179 0.96784 0.94432 1.21044 0.95760 1.01251 0.97880 1.21897 0.92368 0.94515 0.98498 1.22200 1.00625 1.00008 0.96719 1.83066 0.97329 1.42894 1.64538 1.22242 0.96814 1.10932 1.35597 0.89085 1.24751 0.97738 0.94792 0.94144 1.69927 1.18260 1.25034 1.37973 0.86727 0.82185 0.80858 0.81957 1.19005 1.19790 1.16342 1.21906 0.93751 0.93319 0.94862 0.92217 0.91597 0.91446 0.77732 0.90248 0.90808 0.90665 0.91462 0.76722 0.86391 0.85627 0.84893 0.91797 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.84 9.53 37.16 0.35 -0.49 16 2 C 0.10 0.65 3.59 -26.73 -0.10 0.56 16 3 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 4 O -0.56 -4.48 12.88 -35.23 -0.45 -4.94 16 5 C -0.16 -0.99 5.01 -26.73 -0.13 -1.12 16 6 C 0.12 1.23 5.57 -4.04 -0.02 1.20 16 7 N -0.73 -8.28 5.51 -61.24 -0.34 -8.62 16 8 C 0.56 9.14 7.77 -12.32 -0.10 9.04 16 9 O -0.53 -10.80 16.34 5.32 0.09 -10.71 16 10 C -0.15 -2.54 5.87 -105.00 -0.62 -3.16 16 11 C -0.09 -1.14 9.54 -39.12 -0.37 -1.52 16 12 C -0.14 -1.92 10.02 -39.68 -0.40 -2.32 16 13 C -0.05 -0.90 9.79 -39.25 -0.38 -1.28 16 14 C -0.08 -1.77 5.45 -39.00 -0.21 -1.99 16 15 S -0.11 -2.74 19.38 -107.50 -2.08 -4.82 16 16 C -0.51 -14.69 10.01 30.92 0.31 -14.38 16 17 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 18 C 0.09 2.74 5.50 -17.45 -0.10 2.65 16 19 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 20 Si 0.86 21.14 27.74 -169.99 -4.71 16.43 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 24 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.38 1.72 9.05 45.56 0.41 2.13 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.08 0.90 7.82 -51.93 -0.41 0.49 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.40 3.25 6.50 -40.82 -0.27 2.99 16 34 H 0.12 1.05 6.40 -52.49 -0.34 0.71 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 2.17 8.06 -52.48 -0.42 1.74 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.14 3.06 7.65 -52.49 -0.40 2.66 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -34.80 340.60 -8.10 -42.90 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.38 Total: 3.81 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.13 Total: -13.50 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.44 Total: -34.29 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.37 Total: -15.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.08 Total: -4.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.80 -8.10 -42.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079907082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.693 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds