Wall clock time and date at job start Tue Mar 31 2020 07:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46743 * 2 1 4 4 O 1.42897 * 109.47437 * 120.00461 * 2 1 3 5 5 C 1.52997 * 109.46588 * 240.00684 * 2 1 3 6 6 C 1.53003 * 109.47021 * 174.99845 * 5 2 1 7 7 N 1.46498 * 109.47551 * 179.97438 * 6 5 2 8 8 C 1.34774 * 120.00348 * 180.02562 * 7 6 5 9 9 O 1.21549 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.47867 * 120.00079 * 180.02562 * 8 7 6 11 11 C 1.39669 * 120.09925 * 0.02562 * 10 8 7 12 12 C 1.38043 * 120.03800 * 179.97438 * 11 10 8 13 13 C 1.38176 * 120.24168 * 359.75416 * 12 11 10 14 14 C 1.39179 * 120.20357 * 0.50266 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.76778 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31631 * 119.99738 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46962 * 89.99772 * 20 18 16 22 22 H 1.48502 * 109.47274 * 210.00042 * 20 18 16 23 23 H 1.48499 * 109.47299 * 330.00031 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.49916 * 14 13 12 25 25 H 1.09006 * 109.47232 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46964 * 299.99130 * 1 2 3 27 27 H 1.08997 * 109.47616 * 59.99718 * 1 2 3 28 28 H 0.96704 * 114.00042 * 59.99960 * 4 2 1 29 29 H 1.08994 * 109.47694 * 54.99367 * 5 2 1 30 30 H 1.09007 * 109.47292 * 294.99093 * 5 2 1 31 31 H 1.09003 * 109.47129 * 59.99499 * 6 5 2 32 32 H 1.09002 * 109.47130 * 299.99974 * 6 5 2 33 33 H 0.97008 * 119.99747 * 359.97438 * 7 6 5 34 34 H 1.08002 * 119.98588 * 359.96545 * 11 10 8 35 35 H 1.08000 * 119.87868 * 180.02562 * 12 11 10 36 36 H 1.08005 * 119.89464 * 180.25271 * 13 12 11 37 37 H 0.96995 * 120.00040 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.12339 * 180.23002 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7211 -1.2493 6 6 3.5647 -0.6132 -1.3139 7 7 4.0531 -1.3041 -2.5098 8 6 5.3740 -1.3404 -2.7750 9 8 6.1601 -0.7994 -2.0221 10 6 5.8668 -2.0374 -3.9824 11 6 4.9653 -2.6583 -4.8498 12 6 5.4267 -3.3082 -5.9769 13 6 6.7797 -3.3433 -6.2550 14 6 7.6875 -2.7325 -5.3948 15 16 9.4122 -2.7855 -5.7510 16 6 9.8787 -4.1910 -4.7963 17 1 9.1242 -4.7740 -4.2890 18 6 11.2154 -4.5490 -4.6962 19 7 11.5638 -5.5993 -3.9834 20 14 12.5205 -3.5406 -5.5730 21 1 12.9992 -2.4607 -4.6729 22 1 13.6598 -4.4188 -5.9420 23 1 11.9403 -2.9404 -6.8011 24 6 7.2324 -2.0764 -4.2585 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.7211 -1.5953 1.2327 29 1 1.6052 -0.2616 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 3.9994 -1.0727 -0.4262 32 1 3.8531 0.4371 -1.3575 33 1 3.4258 -1.7362 -3.1105 34 1 3.9065 -2.6302 -4.6385 35 1 4.7272 -3.7871 -6.6460 36 1 7.1342 -3.8499 -7.1406 37 1 12.4983 -5.8494 -3.9131 38 1 7.9341 -1.5983 -3.5912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079907082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:36 Heat of formation + Delta-G solvation = -105.495267 kcal Electronic energy + Delta-G solvation = -20159.368204 eV Core-core repulsion = 16898.101351 eV Total energy + Delta-G solvation = -3261.266854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26946 -39.36917 -38.76001 -36.15508 -34.73009 -33.24016 -32.14752 -31.93062 -29.74045 -27.93409 -25.53935 -24.10404 -23.38034 -22.52359 -21.62236 -20.09025 -19.04591 -17.54505 -17.20343 -17.16805 -17.07420 -16.84381 -16.55727 -16.15391 -15.73423 -15.19350 -14.97389 -14.74472 -14.69058 -14.51295 -13.91132 -13.76488 -13.57723 -13.14740 -13.08364 -12.83406 -12.69614 -12.58476 -12.28774 -12.25339 -11.86335 -11.69993 -11.34298 -11.23270 -11.02546 -10.84360 -10.30913 -9.93063 -9.75868 -9.15795 -8.55182 -6.29410 -0.22471 0.19565 1.05328 1.30541 1.42899 1.64082 1.75487 2.04306 2.20649 2.58442 2.82954 2.95491 3.49426 3.61979 3.79478 3.90503 3.97404 4.00783 4.13267 4.30425 4.41535 4.42949 4.45899 4.59641 4.66081 4.86053 4.88442 4.93669 5.06712 5.18762 5.24514 5.28380 5.32106 5.35013 5.43100 5.67555 5.82165 6.08789 6.44652 6.87194 6.88242 7.11837 8.58530 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026725 B = 0.002876 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.453557 B = 9731.825601 C =10270.833992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H 0.091 0.909 4 O -0.587 6.587 5 C -0.149 4.149 6 C 0.120 3.880 7 N -0.706 5.706 8 C 0.558 3.442 9 O -0.586 6.586 10 C -0.159 4.159 11 C -0.058 4.058 12 C -0.121 4.121 13 C -0.058 4.058 14 C -0.120 4.120 15 S -0.116 6.116 16 C -0.524 4.524 17 H 0.046 0.954 18 C 0.040 3.960 19 N -0.920 5.920 20 Si 0.923 3.077 21 H -0.263 1.263 22 H -0.256 1.256 23 H -0.226 1.226 24 C -0.045 4.045 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.388 0.612 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.141 0.859 37 H 0.278 0.722 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.724 8.445 -0.470 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.042 3.958 3 H 0.109 0.891 4 O -0.395 6.395 5 C -0.187 4.187 6 C -0.004 4.004 7 N -0.359 5.359 8 C 0.346 3.654 9 O -0.467 6.467 10 C -0.164 4.164 11 C -0.076 4.076 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.231 4.231 15 S 0.118 5.882 16 C -0.671 4.671 17 H 0.064 0.936 18 C -0.165 4.165 19 N -0.557 5.557 20 Si 0.743 3.257 21 H -0.188 1.188 22 H -0.180 1.180 23 H -0.149 1.149 24 C -0.067 4.067 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.238 0.762 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.257 0.743 34 H 0.195 0.805 35 H 0.197 0.803 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.091 9.962 -0.414 27.000 hybrid contribution 0.135 -1.442 0.762 1.636 sum -24.957 8.520 0.348 26.373 Atomic orbital electron populations 1.22428 0.94382 1.03510 1.03229 1.21904 0.94126 0.96375 0.83416 0.89098 1.86606 1.77774 1.30432 1.44678 1.22484 0.91964 1.03614 1.00650 1.21373 0.95811 0.96604 0.86574 1.45692 1.05972 1.56669 1.27545 1.18460 0.83107 0.79093 0.84741 1.90766 1.57044 1.47917 1.50965 1.19963 0.93784 1.05011 0.97658 1.21774 1.00304 0.93196 0.92335 1.21592 0.94576 0.99614 0.98205 1.22104 0.93812 0.93956 0.98051 1.22074 0.98501 1.03547 0.98945 1.82608 1.01634 1.40478 1.63507 1.22375 0.96270 1.12560 1.35863 0.93614 1.25751 1.00017 0.95898 0.94883 1.70033 1.19217 1.26809 1.39670 0.85759 0.79383 0.79358 0.81172 1.18805 1.18036 1.14925 1.21645 0.95385 0.94862 0.94795 0.91078 0.92317 0.90224 0.76217 0.87964 0.88919 0.92988 0.92719 0.74309 0.80497 0.80282 0.84124 0.91238 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.53 71.98 0.69 -0.43 16 2 C 0.10 1.06 3.59 30.59 0.11 1.17 16 3 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 4 O -0.59 -8.80 12.88 -148.98 -1.92 -10.72 16 5 C -0.15 -1.29 5.01 30.59 0.15 -1.13 16 6 C 0.12 2.23 5.57 86.38 0.48 2.71 16 7 N -0.71 -14.05 5.51 -465.95 -2.57 -16.61 16 8 C 0.56 17.87 7.77 86.79 0.67 18.54 16 9 O -0.59 -24.96 16.34 -3.87 -0.06 -25.02 16 10 C -0.16 -5.13 5.87 -20.11 -0.12 -5.25 16 11 C -0.06 -1.24 9.54 22.57 0.22 -1.03 16 12 C -0.12 -2.72 10.02 22.21 0.22 -2.50 16 13 C -0.06 -1.93 9.79 22.48 0.22 -1.71 16 14 C -0.12 -5.13 5.45 22.65 0.12 -5.00 16 15 S -0.12 -5.86 19.38 -56.49 -1.09 -6.96 16 16 C -0.52 -31.85 10.01 67.94 0.68 -31.17 16 17 H 0.05 3.08 8.02 -2.91 -0.02 3.05 16 18 C 0.04 2.37 5.50 84.84 0.47 2.84 16 19 N -0.92 -57.74 13.97 21.64 0.30 -57.44 16 20 Si 0.92 44.61 27.74 68.60 1.90 46.51 16 21 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.23 -10.34 6.74 99.48 0.67 -9.67 16 24 C -0.04 -1.90 9.34 22.70 0.21 -1.69 16 25 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 27 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.39 2.99 9.05 -74.05 -0.67 2.32 16 29 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.05 1.24 7.82 -2.39 -0.02 1.23 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.42 4.64 6.50 -92.70 -0.60 4.03 16 34 H 0.18 1.74 6.40 -2.91 -0.02 1.72 16 35 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 38 H 0.10 5.01 7.65 -2.91 -0.02 4.99 16 Total: -1.00 -84.30 340.60 0.47 -83.83 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -0.23 Total: 11.05 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.13 Total: -24.65 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -2.26 Total: -74.05 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.98 Total: -35.74 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.09 Total: -6.96 kcal Total: -84.30 0.47 -83.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079907082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.660 kcal (2) G-P(sol) polarization free energy of solvation -84.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds