Wall clock time and date at job start Tue Mar 31 2020 07:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 C 1.50704 * 109.47091 * 120.00272 * 2 1 3 5 5 H 1.07998 * 119.99958 * 119.99926 * 4 2 1 6 6 C 1.37879 * 119.99560 * 299.99795 * 4 2 1 7 7 N 1.31515 * 120.00261 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99688 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46875 * 120.00414 * 8 6 4 11 11 H 1.48499 * 109.46993 * 239.99986 * 8 6 4 12 12 N 1.46901 * 109.47232 * 239.99887 * 2 1 3 13 13 C 1.46901 * 111.00027 * 183.95382 * 12 2 1 14 14 C 1.39680 * 110.99787 * 60.00168 * 12 2 1 15 15 C 1.38932 * 120.07249 * 59.95465 * 14 12 2 16 16 C 1.38087 * 119.92222 * 180.02562 * 15 14 12 17 17 C 1.38308 * 120.07489 * 359.97438 * 16 15 14 18 18 N 1.48021 * 119.92497 * 179.97438 * 17 16 15 19 19 O 1.21799 * 120.00295 * 180.02562 * 18 17 16 20 20 O 1.21805 * 120.00119 * 0.02562 * 18 17 16 21 21 C 1.38260 * 120.15033 * 0.02562 * 17 16 15 22 22 C 1.38125 * 120.07750 * 359.97351 * 21 17 16 23 23 N 1.48021 * 120.04248 * 179.72875 * 22 21 17 24 24 O 1.21805 * 119.99811 * 359.97438 * 23 22 21 25 25 O 1.21802 * 120.00116 * 179.97438 * 23 22 21 26 26 H 1.08994 * 109.47282 * 299.99967 * 1 2 3 27 27 H 1.09005 * 109.46981 * 60.00160 * 1 2 3 28 28 H 1.09001 * 109.47498 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00381 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46935 * 296.04782 * 13 12 2 31 31 H 1.08997 * 109.47151 * 56.04629 * 13 12 2 32 32 H 1.09000 * 109.46853 * 176.04761 * 13 12 2 33 33 H 1.08001 * 120.04215 * 0.02562 * 15 14 12 34 34 H 1.08002 * 119.96095 * 179.97438 * 16 15 14 35 35 H 1.07995 * 119.96563 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.1463 -2.2871 3.6038 10 1 3.1464 -0.1874 4.8165 11 1 1.1659 -1.5867 4.8160 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5718 -0.0591 -2.3610 15 6 1.9094 1.2662 -2.6056 16 6 1.4645 1.8895 -3.7547 17 6 0.6842 1.1958 -4.6618 18 7 0.2087 1.8674 -5.8922 19 8 -0.4789 1.2580 -6.6918 20 8 0.5050 3.0295 -6.1051 21 6 0.3465 -0.1232 -4.4214 22 6 0.7881 -0.7528 -3.2741 23 7 0.4211 -2.1631 -3.0146 24 8 -0.2712 -2.7690 -3.8129 25 8 0.8113 -2.7177 -2.0028 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7087 1.1613 3.4844 30 1 3.9192 0.2044 -1.2300 31 1 3.8069 -1.2915 -0.2719 32 1 3.8164 -1.3722 -2.0500 33 1 2.5190 1.8084 -1.8979 34 1 1.7262 2.9199 -3.9453 35 1 -0.2626 -0.6621 -5.1320 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080760329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:08 Heat of formation + Delta-G solvation = 35.738752 kcal Electronic energy + Delta-G solvation = -24296.689441 eV Core-core repulsion = 20495.253740 eV Total energy + Delta-G solvation = -3801.435702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.61464 -43.17553 -41.34646 -38.59894 -37.86785 -37.45356 -35.07430 -33.56213 -32.47591 -31.23999 -28.40874 -27.93525 -26.89216 -25.77002 -24.44339 -23.44315 -21.88908 -21.28519 -20.14643 -19.54585 -18.91160 -18.86603 -18.55557 -18.44703 -17.75488 -17.02113 -16.95738 -15.98464 -15.76770 -15.00670 -14.88161 -14.49880 -14.07226 -13.79426 -13.60606 -13.07395 -12.87465 -12.83848 -12.69210 -12.62580 -12.56408 -12.42866 -12.30987 -12.23634 -12.19396 -12.12725 -12.08050 -11.21911 -11.08575 -10.80353 -10.57749 -9.40520 -8.17434 -6.27185 -1.63898 -1.37117 -0.18260 -0.14673 0.12831 0.38978 1.42862 1.48227 1.57451 1.66111 2.34285 2.53123 2.89549 2.99850 3.14216 3.27741 3.31217 3.64670 3.94811 4.15152 4.35770 4.39957 4.50317 4.58663 4.64947 4.79707 4.86902 5.01237 5.11384 5.18541 5.25620 5.58516 5.66526 5.97083 6.09667 6.30487 6.42459 6.54672 6.82363 7.41869 8.89038 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.004798 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.207011 B = 5834.002550 C = 6502.751580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.230 3.770 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.068 0.932 6 C 0.020 3.980 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.288 1.288 12 N -0.518 5.518 13 C 0.042 3.958 14 C 0.226 3.774 15 C -0.147 4.147 16 C 0.025 3.975 17 C -0.064 4.064 18 N 0.035 4.965 19 O -0.177 6.177 20 O -0.137 6.137 21 C 0.017 3.983 22 C -0.052 4.052 23 N 0.031 4.969 24 O -0.192 6.192 25 O -0.114 6.114 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.025 0.975 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 3.301 -11.712 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.126 3.874 3 H 0.021 0.979 4 C -0.553 4.553 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.214 1.214 12 N -0.241 5.241 13 C -0.103 4.103 14 C 0.128 3.872 15 C -0.168 4.168 16 C 0.005 3.995 17 C -0.148 4.148 18 N 0.555 4.445 19 O -0.387 6.387 20 O -0.359 6.359 21 C -0.003 4.003 22 C -0.137 4.137 23 N 0.551 4.449 24 O -0.398 6.398 25 O -0.340 6.340 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.200 0.800 34 H 0.220 0.780 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.748 3.213 -11.155 12.198 hybrid contribution -0.084 -0.008 0.780 0.785 sum 3.664 3.205 -10.375 11.460 Atomic orbital electron populations 1.21729 0.98182 0.99003 0.99500 1.19233 0.91756 0.91474 0.84925 0.97883 1.21337 1.31380 1.12565 0.89983 0.91383 1.25567 0.95182 0.95595 1.01613 1.69962 1.37470 1.24051 1.24273 0.85514 0.77977 0.78780 0.79430 1.18995 1.20603 1.21445 1.60104 1.13058 1.51484 0.99482 1.22377 0.83077 1.01216 1.03657 1.19506 0.86733 0.91156 0.89760 1.22156 1.02606 0.93562 0.98465 1.21618 0.86973 1.02423 0.88471 1.20722 1.09702 0.93778 0.90575 1.43391 0.98724 1.00809 1.01527 1.94597 1.35736 1.66533 1.41874 1.94544 1.60016 1.00240 1.81081 1.20584 0.93066 0.92389 0.94257 1.20945 1.09196 0.83951 0.99645 1.43368 0.98896 1.02566 1.00054 1.94484 1.36192 1.65789 1.43340 1.94738 1.55153 1.68758 1.15317 0.90966 0.97010 0.95591 0.92787 0.93667 0.89696 0.91385 0.79996 0.78037 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.85 71.98 0.64 -5.08 16 2 C 0.23 9.94 1.84 44.17 0.08 10.02 16 3 H 0.00 0.17 7.12 -2.38 -0.02 0.15 16 4 C -0.51 -25.01 7.88 25.60 0.20 -24.81 16 5 H 0.07 3.31 6.41 -2.91 -0.02 3.29 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.92 -48.04 11.32 21.45 0.24 -47.80 16 8 Si 0.96 40.53 29.54 68.60 2.03 42.56 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 12 N -0.52 -18.73 2.49 -700.20 -1.74 -20.47 16 13 C 0.04 1.27 9.11 127.69 1.16 2.44 16 14 C 0.23 6.79 3.30 38.21 0.13 6.92 16 15 C -0.15 -3.32 8.57 22.40 0.19 -3.13 16 16 C 0.02 0.45 9.55 22.25 0.21 0.66 16 17 C -0.06 -1.41 6.85 36.40 0.25 -1.16 16 18 N 0.04 0.85 4.45 -46.41 -0.21 0.64 16 19 O -0.18 -4.65 18.44 18.89 0.35 -4.30 16 20 O -0.14 -3.22 18.44 18.88 0.35 -2.87 16 21 C 0.02 0.43 9.06 22.25 0.20 0.63 16 22 C -0.05 -1.56 6.87 36.51 0.25 -1.31 16 23 N 0.03 1.10 4.45 -46.15 -0.21 0.90 16 24 O -0.19 -6.68 18.45 18.88 0.35 -6.33 16 25 O -0.11 -4.61 17.10 18.88 0.32 -4.29 16 26 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 27 H 0.01 0.45 7.22 -2.38 -0.02 0.44 16 28 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 30 H 0.04 1.19 7.35 -2.38 -0.02 1.17 16 31 H 0.08 2.89 6.10 -2.39 -0.01 2.87 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.18 3.67 7.02 -2.91 -0.02 3.65 16 34 H 0.20 2.30 7.60 -2.91 -0.02 2.28 16 35 H 0.19 4.25 7.15 -2.91 -0.02 4.23 16 Total: -1.00 -57.43 309.82 6.39 -51.04 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.15 Total: 4.30 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 3.76 Total: -13.37 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -1.91 Total: -66.73 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 1.37 Total: -17.79 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -57.43 6.39 -51.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.779 kcal (2) G-P(sol) polarization free energy of solvation -57.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds