Wall clock time and date at job start Tue Mar 31 2020 07:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47230 * 2 1 4 4 N 1.46498 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00295 * 264.66533 * 4 3 2 6 6 H 1.07996 * 120.00073 * 145.41204 * 5 4 3 7 7 C 1.38962 * 119.99534 * 325.41936 * 5 4 3 8 8 N 1.31436 * 120.00160 * 338.60523 * 7 5 4 9 9 Si 1.86801 * 119.99733 * 158.60648 * 7 5 4 10 10 H 1.48501 * 109.47372 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47174 * 119.99779 * 9 7 5 12 12 H 1.48504 * 109.46722 * 239.99761 * 9 7 5 13 13 C 1.34778 * 119.99702 * 84.66177 * 4 3 2 14 14 O 1.21838 * 119.99525 * 180.02562 * 13 4 3 15 15 C 1.41154 * 120.00130 * 0.02562 * 13 4 3 16 16 C 1.35220 * 120.00134 * 179.97438 * 15 13 4 17 17 S 1.76192 * 120.00348 * 180.02562 * 16 15 13 18 18 C 1.81005 * 100.00320 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47185 * 180.02562 * 18 17 16 20 20 C 1.34517 * 125.79061 * 89.72014 * 19 18 17 21 21 C 1.41384 * 106.83973 * 179.88974 * 20 19 18 22 22 C 1.34507 * 106.84334 * 0.36705 * 21 20 19 23 23 O 1.34302 * 125.79064 * 270.02543 * 19 18 17 24 24 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47419 * 300.00215 * 1 2 3 26 26 H 1.09004 * 109.46751 * 60.00613 * 1 2 3 27 27 H 1.08998 * 109.47625 * 239.99335 * 2 1 3 28 28 H 1.09011 * 109.46910 * 119.99750 * 2 1 3 29 29 H 1.09001 * 109.46735 * 59.99570 * 3 2 1 30 30 H 1.08998 * 109.46629 * 299.99835 * 3 2 1 31 31 H 0.96998 * 119.99551 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.00111 * 359.97438 * 15 13 4 33 33 H 1.08001 * 119.99755 * 0.02562 * 16 15 13 34 34 H 1.08997 * 109.47117 * 60.00000 * 18 17 16 35 35 H 1.08998 * 109.46980 * 299.99892 * 18 17 16 36 36 H 1.07998 * 126.57849 * 0.02562 * 20 19 18 37 37 H 1.07997 * 126.57627 * 180.16542 * 21 20 19 38 38 H 1.07994 * 125.79445 * 179.75187 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.5530 1.1817 6 1 5.1261 1.0321 1.3138 7 6 3.6781 2.3352 2.2102 8 7 2.8041 3.2803 1.9449 9 14 4.2334 2.0436 3.9698 10 1 5.2150 0.9297 4.0010 11 1 4.8673 3.2775 4.4997 12 1 3.0588 1.6914 4.8074 13 6 4.1794 1.3338 -1.1613 14 8 5.3977 1.3333 -1.1607 15 6 3.4741 1.2204 -2.3787 16 6 4.1506 1.1118 -3.5444 17 16 3.2703 0.9710 -5.0642 18 6 4.6573 0.8620 -6.2220 19 6 4.1294 0.7322 -7.6275 20 6 3.8500 1.7510 -8.4602 21 6 3.3856 1.1785 -9.6666 22 6 3.4012 -0.1557 -9.4962 23 8 3.8526 -0.4202 -8.2592 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.4476 3.8265 2.6629 32 1 2.3940 1.2204 -2.3792 33 1 5.2306 1.1114 -3.5440 34 1 5.2651 -0.0097 -5.9799 35 1 5.2665 1.7625 -6.1449 36 1 3.9614 2.8042 -8.2486 37 1 3.0746 1.7104 -10.5535 38 1 3.1013 -0.8896 -10.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084922767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:53 Heat of formation + Delta-G solvation = 2.291974 kcal Electronic energy + Delta-G solvation = -20390.076182 eV Core-core repulsion = 17133.483334 eV Total energy + Delta-G solvation = -3256.592848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.77537 -38.79330 -35.37444 -33.42450 -33.01931 -32.19071 -31.89667 -31.20066 -27.03615 -26.09981 -25.04180 -22.62203 -21.98584 -20.96855 -20.73000 -18.52928 -17.47354 -17.19847 -16.69672 -16.54209 -15.48370 -15.06749 -14.88558 -14.49609 -14.12942 -13.79647 -13.71798 -13.48589 -13.09309 -13.03345 -12.75592 -12.60163 -12.23172 -11.95133 -11.65864 -11.41841 -11.38695 -10.99333 -10.71696 -10.36833 -10.34086 -10.22433 -10.12680 -10.04519 -9.93654 -8.99751 -8.69525 -8.44437 -7.56169 -7.28610 -6.40265 -3.96414 1.03721 1.75499 1.94708 2.40534 2.55902 2.74483 3.14714 3.23481 3.30363 4.11662 4.31487 4.41699 4.68364 4.79256 4.92518 4.96887 5.10326 5.18521 5.51217 5.55912 5.62709 5.68415 5.72472 5.82419 5.89237 6.10647 6.23923 6.27745 6.40350 6.48263 6.51406 6.60165 6.68136 6.87925 6.92617 7.26948 7.53368 8.21190 8.48060 9.15146 9.35488 9.99568 10.61831 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028971 B = 0.002940 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.268039 B = 9521.539406 C =10057.570387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.097 3.903 4 N -0.424 5.424 5 C -0.300 4.300 6 H 0.096 0.904 7 C 0.035 3.965 8 N -0.861 5.861 9 Si 0.919 3.081 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.478 3.522 14 O -0.595 6.595 15 C -0.142 4.142 16 C -0.134 4.134 17 S -0.110 6.110 18 C -0.034 4.034 19 C -0.001 4.001 20 C -0.187 4.187 21 C -0.215 4.215 22 C -0.034 4.034 23 O -0.171 6.171 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -4.607 -17.004 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.027 4.027 4 N -0.140 5.140 5 C -0.428 4.428 6 H 0.113 0.887 7 C -0.170 4.170 8 N -0.499 5.499 9 Si 0.746 3.254 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.268 3.732 14 O -0.483 6.483 15 C -0.174 4.174 16 C -0.269 4.269 17 S 0.133 5.867 18 C -0.181 4.181 19 C -0.052 4.052 20 C -0.209 4.209 21 C -0.234 4.234 22 C -0.103 4.103 23 O -0.067 6.067 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.133 0.867 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.422 -4.772 -16.995 18.197 hybrid contribution 1.269 0.218 0.952 1.601 sum -3.153 -4.553 -16.043 16.972 Atomic orbital electron populations 1.21675 0.96252 1.00751 1.01574 1.21995 0.95001 0.99040 1.01874 1.21764 0.81847 0.94756 1.04320 1.43573 1.04816 1.60398 1.05197 1.19577 1.07154 1.27122 0.88972 0.88671 1.25419 0.97146 0.93679 1.00775 1.69931 1.30342 1.16430 1.33193 0.85977 0.78736 0.78724 0.81990 1.19040 1.20642 1.20458 1.16762 0.87764 0.84778 0.83869 1.90653 1.13655 1.56799 1.87174 1.21920 1.00199 1.02027 0.93277 1.25359 1.02571 1.04455 0.94498 1.85898 1.11443 1.91647 0.97755 1.21906 0.99293 1.07639 0.89272 1.21410 1.05742 0.83625 0.94444 1.21658 1.05241 1.00126 0.93869 1.21852 1.07341 0.94163 1.00078 1.24090 1.03108 0.97606 0.85505 1.84032 1.64450 1.33317 1.24863 0.93373 0.92730 0.93124 0.92980 0.91698 0.86706 0.93131 0.92032 0.86160 0.84057 0.87538 0.86381 0.83007 0.83224 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.14 -2.60 6.09 -26.73 -0.16 -2.76 16 3 C 0.10 2.13 4.56 -4.04 -0.02 2.12 16 4 N -0.42 -10.91 2.55 -118.18 -0.30 -11.21 16 5 C -0.30 -8.31 8.96 -15.00 -0.13 -8.45 16 6 H 0.10 2.77 7.71 -52.49 -0.40 2.36 16 7 C 0.03 0.91 4.94 -17.45 -0.09 0.82 16 8 N -0.86 -22.89 11.33 55.50 0.63 -22.26 16 9 Si 0.92 20.31 29.60 -169.99 -5.03 15.28 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 13 C 0.48 12.15 7.35 -15.15 -0.11 12.04 16 14 O -0.60 -17.07 15.93 5.06 0.08 -16.99 16 15 C -0.14 -2.92 8.30 -39.55 -0.33 -3.25 16 16 C -0.13 -2.40 9.53 29.66 0.28 -2.12 16 17 S -0.11 -1.59 22.02 -107.50 -2.37 -3.96 16 18 C -0.03 -0.39 6.20 36.00 0.22 -0.17 16 19 C 0.00 -0.01 6.58 -35.63 -0.23 -0.25 16 20 C -0.19 -1.96 10.81 -39.70 -0.43 -2.39 16 21 C -0.22 -1.93 10.91 -39.70 -0.43 -2.37 16 22 C -0.03 -0.30 12.09 29.41 0.36 0.06 16 23 O -0.17 -1.99 10.65 5.70 0.06 -1.93 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 28 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 29 H 0.12 2.75 5.36 -51.93 -0.28 2.47 16 30 H 0.05 1.04 6.40 -51.93 -0.33 0.71 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 32 H 0.12 2.26 5.97 -52.49 -0.31 1.95 16 33 H 0.14 2.59 7.41 -52.49 -0.39 2.20 16 34 H 0.11 1.15 8.14 -51.92 -0.42 0.72 16 35 H 0.12 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -31.91 341.33 -7.54 -39.46 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.05 Total: 4.97 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.71 Total: -8.50 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.33 Total: -33.47 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.14 Total: -18.92 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.37 Total: -3.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.91 -7.54 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084922767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.749 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds