Wall clock time and date at job start Tue Mar 31 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47230 * 2 1 4 4 N 1.46498 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00295 * 264.66533 * 4 3 2 6 6 H 1.07996 * 120.00073 * 145.41204 * 5 4 3 7 7 C 1.38962 * 119.99534 * 325.41936 * 5 4 3 8 8 N 1.31436 * 120.00160 * 338.60523 * 7 5 4 9 9 Si 1.86801 * 119.99733 * 158.60648 * 7 5 4 10 10 H 1.48501 * 109.47372 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47174 * 119.99779 * 9 7 5 12 12 H 1.48504 * 109.46722 * 239.99761 * 9 7 5 13 13 C 1.34778 * 119.99702 * 84.66177 * 4 3 2 14 14 O 1.21838 * 119.99525 * 180.02562 * 13 4 3 15 15 C 1.41154 * 120.00130 * 0.02562 * 13 4 3 16 16 C 1.35220 * 120.00134 * 179.97438 * 15 13 4 17 17 S 1.76192 * 120.00348 * 180.02562 * 16 15 13 18 18 C 1.81005 * 100.00320 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47185 * 180.02562 * 18 17 16 20 20 C 1.34517 * 125.79061 * 89.72014 * 19 18 17 21 21 C 1.41384 * 106.83973 * 179.88974 * 20 19 18 22 22 C 1.34507 * 106.84334 * 0.36705 * 21 20 19 23 23 O 1.34302 * 125.79064 * 270.02543 * 19 18 17 24 24 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47419 * 300.00215 * 1 2 3 26 26 H 1.09004 * 109.46751 * 60.00613 * 1 2 3 27 27 H 1.08998 * 109.47625 * 239.99335 * 2 1 3 28 28 H 1.09011 * 109.46910 * 119.99750 * 2 1 3 29 29 H 1.09001 * 109.46735 * 59.99570 * 3 2 1 30 30 H 1.08998 * 109.46629 * 299.99835 * 3 2 1 31 31 H 0.96998 * 119.99551 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.00111 * 359.97438 * 15 13 4 33 33 H 1.08001 * 119.99755 * 0.02562 * 16 15 13 34 34 H 1.08997 * 109.47117 * 60.00000 * 18 17 16 35 35 H 1.08998 * 109.46980 * 299.99892 * 18 17 16 36 36 H 1.07998 * 126.57849 * 0.02562 * 20 19 18 37 37 H 1.07997 * 126.57627 * 180.16542 * 21 20 19 38 38 H 1.07994 * 125.79445 * 179.75187 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.5530 1.1817 6 1 5.1261 1.0321 1.3138 7 6 3.6781 2.3352 2.2102 8 7 2.8041 3.2803 1.9449 9 14 4.2334 2.0436 3.9698 10 1 5.2150 0.9297 4.0010 11 1 4.8673 3.2775 4.4997 12 1 3.0588 1.6914 4.8074 13 6 4.1794 1.3338 -1.1613 14 8 5.3977 1.3333 -1.1607 15 6 3.4741 1.2204 -2.3787 16 6 4.1506 1.1118 -3.5444 17 16 3.2703 0.9710 -5.0642 18 6 4.6573 0.8620 -6.2220 19 6 4.1294 0.7322 -7.6275 20 6 3.8500 1.7510 -8.4602 21 6 3.3856 1.1785 -9.6666 22 6 3.4012 -0.1557 -9.4962 23 8 3.8526 -0.4202 -8.2592 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.4476 3.8265 2.6629 32 1 2.3940 1.2204 -2.3792 33 1 5.2306 1.1114 -3.5440 34 1 5.2651 -0.0097 -5.9799 35 1 5.2665 1.7625 -6.1449 36 1 3.9614 2.8042 -8.2486 37 1 3.0746 1.7104 -10.5535 38 1 3.1013 -0.8896 -10.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084922767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:52 Heat of formation + Delta-G solvation = -15.747465 kcal Electronic energy + Delta-G solvation = -20390.858431 eV Core-core repulsion = 17133.483334 eV Total energy + Delta-G solvation = -3257.375097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.53343 -40.68565 -37.24693 -34.75815 -34.21668 -33.55653 -33.04209 -32.96767 -28.10476 -27.68515 -26.70860 -24.31705 -22.72722 -22.44971 -21.61361 -20.15953 -19.01330 -18.54516 -18.27337 -17.49332 -17.00292 -16.63923 -16.21826 -15.70128 -15.58880 -15.39438 -15.10856 -14.99568 -14.34453 -14.06208 -13.77361 -13.59877 -13.53755 -13.41692 -13.14455 -13.10303 -13.04872 -12.59645 -12.29462 -12.07684 -12.00668 -11.60219 -11.54519 -11.49826 -10.92476 -10.87972 -10.48461 -9.51209 -9.43961 -8.62054 -8.37281 -6.05114 0.03313 0.15406 0.97555 1.26668 1.38748 1.41026 1.55373 1.76593 2.00142 2.28065 2.50533 3.07348 3.20251 3.53623 3.90273 3.98778 4.09723 4.15357 4.27628 4.31574 4.34316 4.41662 4.58357 4.76065 4.86625 4.93056 4.97175 4.98714 5.10651 5.12641 5.14012 5.27879 5.37898 5.45776 5.55766 5.58988 6.13405 6.18003 6.51541 7.14087 7.41133 8.03631 8.62999 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028971 B = 0.002940 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.268039 B = 9521.539406 C =10057.570387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.439 5.439 5 C -0.340 4.340 6 H 0.066 0.934 7 C 0.003 3.997 8 N -0.882 5.882 9 Si 0.985 3.015 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.261 1.261 13 C 0.470 3.530 14 O -0.645 6.645 15 C -0.179 4.179 16 C -0.100 4.100 17 S -0.087 6.087 18 C -0.031 4.031 19 C -0.031 4.031 20 C -0.187 4.187 21 C -0.227 4.227 22 C -0.027 4.027 23 O -0.191 6.191 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.277 0.723 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 -5.035 -19.020 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C -0.023 4.023 4 N -0.154 5.154 5 C -0.468 4.468 6 H 0.084 0.916 7 C -0.200 4.200 8 N -0.519 5.519 9 Si 0.808 3.192 10 H -0.196 1.196 11 H -0.202 1.202 12 H -0.185 1.185 13 C 0.262 3.738 14 O -0.536 6.536 15 C -0.211 4.211 16 C -0.235 4.235 17 S 0.158 5.842 18 C -0.178 4.178 19 C -0.082 4.082 20 C -0.209 4.209 21 C -0.246 4.246 22 C -0.095 4.095 23 O -0.088 6.088 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.191 0.809 38 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.925 -5.196 -19.023 20.591 hybrid contribution 1.759 0.350 1.226 2.172 sum -4.166 -4.846 -17.797 18.910 Atomic orbital electron populations 1.21628 0.93095 1.02500 1.02220 1.21890 0.97594 0.96368 1.01184 1.21831 0.79828 0.96964 1.03688 1.43795 1.06256 1.60539 1.04844 1.19480 1.07451 1.28877 0.91009 0.91620 1.26162 0.96978 0.92790 1.04042 1.69990 1.30788 1.16584 1.34563 0.85028 0.78717 0.78350 0.77154 1.19580 1.20163 1.18529 1.17470 0.87502 0.83485 0.85353 1.90593 1.15765 1.59117 1.88131 1.21597 1.00733 1.06862 0.91934 1.25606 1.02613 0.99203 0.96062 1.85883 1.12457 1.90203 0.95705 1.22008 0.98119 1.08885 0.88798 1.21374 1.08041 0.84148 0.94598 1.22001 1.04007 1.00566 0.94322 1.22221 1.07435 0.94510 1.00459 1.24941 1.01065 0.98687 0.84852 1.84022 1.64999 1.33624 1.26106 0.91056 0.92884 0.91692 0.92638 0.93413 0.88731 0.92047 0.91340 0.84462 0.84838 0.86849 0.84815 0.81995 0.80855 0.74242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.13 -4.87 6.09 30.60 0.19 -4.68 16 3 C 0.10 4.49 4.56 86.38 0.39 4.88 16 4 N -0.44 -23.61 2.55 -645.98 -1.65 -25.26 16 5 C -0.34 -19.81 8.96 84.07 0.75 -19.05 16 6 H 0.07 4.10 7.71 -2.91 -0.02 4.08 16 7 C 0.00 0.19 4.94 84.93 0.42 0.61 16 8 N -0.88 -47.71 11.33 21.67 0.25 -47.46 16 9 Si 0.98 42.46 29.60 68.60 2.03 44.49 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 C 0.47 24.96 7.35 84.96 0.62 25.58 16 14 O -0.64 -39.01 15.93 -4.79 -0.08 -39.09 16 15 C -0.18 -7.44 8.30 22.29 0.18 -7.26 16 16 C -0.10 -3.54 9.53 67.12 0.64 -2.90 16 17 S -0.09 -2.37 22.02 -56.49 -1.24 -3.61 16 18 C -0.03 -0.66 6.20 71.23 0.44 -0.22 16 19 C -0.03 -0.65 6.58 24.83 0.16 -0.49 16 20 C -0.19 -3.46 10.81 22.19 0.24 -3.22 16 21 C -0.23 -3.39 10.91 22.19 0.24 -3.15 16 22 C -0.03 -0.39 12.09 66.97 0.81 0.42 16 23 O -0.19 -4.03 10.65 -2.53 -0.03 -4.05 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 2.00 7.53 -2.39 -0.02 1.98 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.09 4.64 5.36 -2.39 -0.01 4.63 16 30 H 0.06 2.55 6.40 -2.39 -0.02 2.54 16 31 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 32 H 0.14 5.13 5.97 -2.91 -0.02 5.11 16 33 H 0.13 4.93 7.41 -2.91 -0.02 4.91 16 34 H 0.11 2.27 8.14 -2.40 -0.02 2.25 16 35 H 0.13 2.42 8.14 -2.40 -0.02 2.40 16 36 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.24 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -72.57 341.33 6.15 -66.42 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.06 Total: 21.17 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.81 Total: -12.62 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.40 Total: -72.72 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.10 Total: -43.14 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -1.24 Total: -3.61 kcal Total: -72.57 6.15 -66.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084922767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.674 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds