Wall clock time and date at job start Tue Mar 31 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46889 * 2 1 4 4 C 1.50700 * 109.46938 * 239.99984 * 2 1 3 5 5 H 1.07995 * 119.99468 * 239.99686 * 4 2 1 6 6 C 1.37873 * 120.00173 * 60.00338 * 4 2 1 7 7 N 1.31514 * 119.99814 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00242 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46467 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46821 * 119.99630 * 8 6 4 11 11 H 1.48495 * 109.47138 * 240.00032 * 8 6 4 12 12 N 1.46498 * 109.46805 * 120.00006 * 2 1 3 13 13 C 1.46496 * 120.00244 * 60.00348 * 12 2 1 14 14 C 1.34783 * 119.99904 * 240.00132 * 12 2 1 15 15 O 1.21803 * 119.99597 * 0.02562 * 14 12 2 16 16 C 1.41274 * 119.99872 * 180.02562 * 14 12 2 17 17 C 1.35113 * 119.99896 * 179.72109 * 16 14 12 18 18 S 1.76192 * 120.00076 * 180.27514 * 17 16 14 19 19 C 1.80999 * 100.00079 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.34517 * 125.78951 * 89.71729 * 20 19 18 22 22 C 1.41384 * 106.83666 * 179.88966 * 21 20 19 23 23 C 1.34506 * 106.84455 * 0.37246 * 22 21 20 24 24 O 1.34304 * 125.78779 * 270.02617 * 20 19 18 25 25 H 1.08996 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46792 * 300.00289 * 1 2 3 27 27 H 1.08994 * 109.46977 * 59.99925 * 1 2 3 28 28 H 0.97003 * 120.00179 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46937 * 269.99726 * 13 12 2 30 30 H 1.08997 * 109.47175 * 29.99298 * 13 12 2 31 31 H 1.08998 * 109.47305 * 150.00096 * 13 12 2 32 32 H 1.08002 * 120.00431 * 0.02562 * 16 14 12 33 33 H 1.08002 * 119.99618 * 0.27416 * 17 16 14 34 34 H 1.09006 * 109.47192 * 300.00091 * 19 18 17 35 35 H 1.09001 * 109.47104 * 59.99987 * 19 18 17 36 36 H 1.07994 * 126.57842 * 0.02562 * 21 20 19 37 37 H 1.08006 * 126.57623 * 180.16451 * 22 21 20 38 38 H 1.07999 * 125.79494 * 179.75083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2864 -3.6037 10 1 1.1678 -1.5866 -4.8164 11 1 3.1473 -0.1858 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.0870 1.1307 1.8908 16 6 3.2645 -0.7017 3.2367 17 6 4.0458 -0.0468 4.1232 18 16 4.6396 -0.8796 5.5578 19 6 5.5884 0.4563 6.3268 20 6 6.2071 -0.0401 7.6082 21 6 7.4161 -0.6180 7.7257 22 6 7.5933 -0.9218 9.0951 23 6 6.4787 -0.5190 9.7312 24 8 5.6425 0.0143 8.8255 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7083 1.1609 -3.4844 29 1 0.7376 -2.1444 1.9993 30 1 1.5295 -2.5968 0.4708 31 1 2.4629 -2.5818 1.9864 32 1 3.0042 -1.7360 3.4072 33 1 4.3065 0.9873 3.9524 34 1 6.3751 0.7816 5.6460 35 1 4.9259 1.2943 6.5435 36 1 8.1177 -0.8106 6.9277 37 1 8.4566 -1.3908 9.5438 38 1 6.2882 -0.6094 10.7904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084924208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:10 Heat of formation + Delta-G solvation = 6.745946 kcal Electronic energy + Delta-G solvation = -20135.979992 eV Core-core repulsion = 16879.580283 eV Total energy + Delta-G solvation = -3256.399710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.91373 -39.24175 -35.41432 -33.57335 -33.09602 -32.40958 -32.32410 -29.36190 -27.17502 -26.13373 -25.21839 -23.92534 -22.12378 -21.09475 -20.28503 -18.29192 -17.70664 -17.27711 -16.76357 -16.40086 -15.67132 -15.44232 -15.06301 -14.47736 -14.41710 -14.29736 -13.61716 -13.20608 -13.17129 -12.95919 -12.59431 -12.45585 -12.42779 -12.30261 -11.56115 -11.38686 -11.05876 -10.83808 -10.70513 -10.55187 -10.50586 -10.26280 -10.22272 -10.15635 -9.17468 -9.03109 -8.79987 -8.41592 -7.78053 -7.45045 -6.05887 -4.13761 0.80102 1.31775 1.73698 2.07213 2.38467 2.58805 3.26869 3.34751 3.37978 3.98630 4.14316 4.15320 4.42989 4.50951 4.65932 4.81763 4.98922 5.09907 5.25102 5.42978 5.50622 5.54855 5.68630 5.81932 6.03510 6.08270 6.10521 6.14877 6.41921 6.73855 6.78691 6.87285 7.09347 7.46032 7.56686 7.73655 8.04084 8.21756 8.54739 8.84781 9.06626 9.52574 10.99427 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.002488 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.820379 B =11253.383764 C =11444.751585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.585 5.585 13 C 0.081 3.919 14 C 0.539 3.461 15 O -0.561 6.561 16 C -0.174 4.174 17 C -0.101 4.101 18 S -0.094 6.094 19 C -0.036 4.036 20 C -0.006 4.006 21 C -0.183 4.183 22 C -0.216 4.216 23 C -0.031 4.031 24 O -0.170 6.170 25 H 0.029 0.971 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.262 0.738 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 -4.856 21.777 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.315 5.315 13 C -0.062 4.062 14 C 0.327 3.673 15 O -0.444 6.444 16 C -0.206 4.206 17 C -0.235 4.235 18 S 0.150 5.850 19 C -0.183 4.183 20 C -0.057 4.057 21 C -0.205 4.205 22 C -0.235 4.235 23 C -0.100 4.100 24 O -0.066 6.066 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.165 0.835 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.991 -5.115 21.984 24.296 hybrid contribution 0.625 0.536 -1.290 1.531 sum 9.616 -4.579 20.694 23.274 Atomic orbital electron populations 1.22078 0.98123 0.99427 1.00806 1.18965 0.90935 0.94619 0.79931 0.91813 1.21359 1.31688 1.12975 0.90267 0.92161 1.24903 0.94978 0.95006 0.98984 1.69895 1.36418 1.22655 1.23621 0.86433 0.78588 0.79585 0.82748 1.19804 1.20945 1.20920 1.48177 1.48327 1.11610 1.23416 1.21663 0.98868 0.83267 1.02447 1.16769 0.80101 0.86829 0.83589 1.90777 1.59147 1.16912 1.77561 1.21854 1.01388 1.01135 0.96270 1.25645 0.98900 1.02946 0.96044 1.86060 1.59981 1.17834 1.21089 1.21960 1.03283 1.00013 0.93074 1.21328 0.93938 1.05839 0.84641 1.21676 0.97515 1.03575 0.97754 1.21872 1.00568 1.07104 0.93932 1.24126 0.90046 1.00754 0.95031 1.84034 1.42952 1.63735 1.15916 0.95142 0.96995 0.88829 0.92756 0.93751 0.89992 0.92594 0.85270 0.83542 0.86112 0.87250 0.82943 0.83122 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.16 0.33 -3.22 16 2 C 0.26 6.67 2.64 -69.08 -0.18 6.48 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.31 7.99 -34.44 -0.28 -14.59 16 5 H 0.06 1.62 7.33 -52.49 -0.38 1.24 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.59 -12.89 2.75 -178.79 -0.49 -13.39 16 13 C 0.08 1.41 9.12 59.84 0.55 1.95 16 14 C 0.54 11.59 7.43 -15.10 -0.11 11.48 16 15 O -0.56 -14.12 15.42 5.10 0.08 -14.04 16 16 C -0.17 -2.86 8.78 -39.54 -0.35 -3.21 16 17 C -0.10 -1.45 9.52 29.62 0.28 -1.17 16 18 S -0.09 -1.09 22.02 -107.50 -2.37 -3.45 16 19 C -0.04 -0.33 6.20 36.01 0.22 -0.11 16 20 C -0.01 -0.06 6.58 -35.62 -0.23 -0.30 16 21 C -0.18 -1.62 10.81 -39.70 -0.43 -2.05 16 22 C -0.22 -1.65 10.91 -39.70 -0.43 -2.08 16 23 C -0.03 -0.23 12.09 29.41 0.36 0.13 16 24 O -0.17 -1.72 10.65 5.69 0.06 -1.66 16 25 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.49 7.02 -51.93 -0.36 1.12 16 31 H 0.06 0.80 6.08 -51.93 -0.32 0.48 16 32 H 0.13 1.82 6.08 -52.49 -0.32 1.50 16 33 H 0.15 2.14 7.41 -52.49 -0.39 1.75 16 34 H 0.12 0.92 8.14 -51.91 -0.42 0.50 16 35 H 0.11 0.93 8.14 -51.92 -0.42 0.50 16 36 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -32.75 338.97 -7.31 -40.06 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.94 Total: 0.93 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.37 Total: -5.02 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.14 Total: -38.06 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.14 Total: -15.70 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.37 Total: -3.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.75 -7.31 -40.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084924208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.807 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds