Wall clock time and date at job start Tue Mar 31 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46889 * 2 1 4 4 C 1.50700 * 109.46938 * 239.99984 * 2 1 3 5 5 H 1.07995 * 119.99468 * 239.99686 * 4 2 1 6 6 C 1.37873 * 120.00173 * 60.00338 * 4 2 1 7 7 N 1.31514 * 119.99814 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00242 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46467 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46821 * 119.99630 * 8 6 4 11 11 H 1.48495 * 109.47138 * 240.00032 * 8 6 4 12 12 N 1.46498 * 109.46805 * 120.00006 * 2 1 3 13 13 C 1.46496 * 120.00244 * 60.00348 * 12 2 1 14 14 C 1.34783 * 119.99904 * 240.00132 * 12 2 1 15 15 O 1.21803 * 119.99597 * 0.02562 * 14 12 2 16 16 C 1.41274 * 119.99872 * 180.02562 * 14 12 2 17 17 C 1.35113 * 119.99896 * 179.72109 * 16 14 12 18 18 S 1.76192 * 120.00076 * 180.27514 * 17 16 14 19 19 C 1.80999 * 100.00079 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.34517 * 125.78951 * 89.71729 * 20 19 18 22 22 C 1.41384 * 106.83666 * 179.88966 * 21 20 19 23 23 C 1.34506 * 106.84455 * 0.37246 * 22 21 20 24 24 O 1.34304 * 125.78779 * 270.02617 * 20 19 18 25 25 H 1.08996 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46792 * 300.00289 * 1 2 3 27 27 H 1.08994 * 109.46977 * 59.99925 * 1 2 3 28 28 H 0.97003 * 120.00179 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46937 * 269.99726 * 13 12 2 30 30 H 1.08997 * 109.47175 * 29.99298 * 13 12 2 31 31 H 1.08998 * 109.47305 * 150.00096 * 13 12 2 32 32 H 1.08002 * 120.00431 * 0.02562 * 16 14 12 33 33 H 1.08002 * 119.99618 * 0.27416 * 17 16 14 34 34 H 1.09006 * 109.47192 * 300.00091 * 19 18 17 35 35 H 1.09001 * 109.47104 * 59.99987 * 19 18 17 36 36 H 1.07994 * 126.57842 * 0.02562 * 21 20 19 37 37 H 1.08006 * 126.57623 * 180.16451 * 22 21 20 38 38 H 1.07999 * 125.79494 * 179.75083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2864 -3.6037 10 1 1.1678 -1.5866 -4.8164 11 1 3.1473 -0.1858 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.0870 1.1307 1.8908 16 6 3.2645 -0.7017 3.2367 17 6 4.0458 -0.0468 4.1232 18 16 4.6396 -0.8796 5.5578 19 6 5.5884 0.4563 6.3268 20 6 6.2071 -0.0401 7.6082 21 6 7.4161 -0.6180 7.7257 22 6 7.5933 -0.9218 9.0951 23 6 6.4787 -0.5190 9.7312 24 8 5.6425 0.0143 8.8255 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7083 1.1609 -3.4844 29 1 0.7376 -2.1444 1.9993 30 1 1.5295 -2.5968 0.4708 31 1 2.4629 -2.5818 1.9864 32 1 3.0042 -1.7360 3.4072 33 1 4.3065 0.9873 3.9524 34 1 6.3751 0.7816 5.6460 35 1 4.9259 1.2943 6.5435 36 1 8.1177 -0.8106 6.9277 37 1 8.4566 -1.3908 9.5438 38 1 6.2882 -0.6094 10.7904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084924208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:10 Heat of formation + Delta-G solvation = -12.779136 kcal Electronic energy + Delta-G solvation = -20136.826663 eV Core-core repulsion = 16879.580283 eV Total energy + Delta-G solvation = -3257.246381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.54171 -40.90137 -37.23112 -34.90196 -34.22738 -33.91827 -32.99474 -31.25825 -27.86674 -27.61510 -27.31079 -25.41727 -22.74036 -22.32521 -21.47105 -19.73725 -18.83450 -18.49771 -18.21686 -17.51086 -17.21128 -16.68635 -16.28491 -16.09399 -15.69684 -15.10078 -14.99914 -14.46338 -14.38921 -13.96335 -13.78176 -13.70264 -13.59126 -13.47504 -13.13264 -12.99989 -12.76755 -12.70543 -12.63561 -12.20432 -12.10494 -11.69682 -11.57838 -11.17676 -10.89025 -10.76570 -10.50481 -9.45018 -9.37156 -8.63920 -8.14039 -6.30935 -0.02674 0.02060 0.90370 1.21787 1.41324 1.42752 1.54529 1.75188 1.99116 2.34010 2.46183 2.61187 3.13436 3.51680 3.89017 3.92424 4.08901 4.12531 4.26958 4.33673 4.48867 4.72933 4.74888 4.82353 4.86768 4.89383 4.97247 4.97900 5.07250 5.08568 5.12263 5.48256 5.54695 5.63252 5.67601 6.04998 6.12285 6.16679 6.77000 6.82604 7.31051 7.47247 8.90400 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.002488 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.820379 B =11253.383764 C =11444.751585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.596 5.596 13 C 0.078 3.922 14 C 0.533 3.467 15 O -0.616 6.616 16 C -0.201 4.201 17 C -0.076 4.076 18 S -0.070 6.070 19 C -0.036 4.036 20 C -0.033 4.033 21 C -0.186 4.186 22 C -0.229 4.229 23 C -0.027 4.027 24 O -0.190 6.190 25 H 0.047 0.953 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.564 -6.957 23.633 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.157 3.843 3 H 0.027 0.973 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.325 5.325 13 C -0.064 4.064 14 C 0.324 3.676 15 O -0.502 6.502 16 C -0.234 4.234 17 C -0.210 4.210 18 S 0.176 5.824 19 C -0.183 4.183 20 C -0.083 4.083 21 C -0.208 4.208 22 C -0.247 4.247 23 C -0.095 4.095 24 O -0.087 6.087 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.174 0.826 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.134 0.866 36 H 0.181 0.819 37 H 0.190 0.810 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 10.185 -7.266 23.872 26.952 hybrid contribution 0.387 1.234 -1.626 2.078 sum 10.571 -6.031 22.246 25.358 Atomic orbital electron populations 1.21865 0.97066 1.00151 0.99904 1.18567 0.91709 0.92306 0.81719 0.97284 1.21598 1.31814 1.13034 0.91078 0.92044 1.25771 0.95104 0.95687 1.02102 1.70036 1.37346 1.23946 1.24379 0.85369 0.78214 0.78461 0.78737 1.18871 1.19923 1.21104 1.48170 1.48566 1.13412 1.22375 1.21898 1.01221 0.80529 1.02730 1.17496 0.79194 0.86357 0.84567 1.90737 1.61175 1.19334 1.78965 1.21568 1.04151 1.02321 0.95400 1.25834 0.96251 1.02576 0.96374 1.86035 1.59361 1.18305 1.18693 1.22079 1.03618 0.99189 0.93366 1.21390 0.94607 1.07581 0.84760 1.22008 0.97320 1.02612 0.98865 1.22229 1.01567 1.07433 0.93507 1.24927 0.89444 0.98998 0.96156 1.84025 1.43947 1.64374 1.16391 0.93400 0.96245 0.91304 0.92627 0.91570 0.91033 0.89223 0.82617 0.84411 0.84538 0.86615 0.81890 0.80988 0.74365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 8.97 71.98 0.65 -5.90 16 2 C 0.26 14.00 2.64 44.25 0.12 14.12 16 3 H 0.01 0.59 6.90 -2.38 -0.02 0.57 16 4 C -0.54 -29.85 7.99 25.60 0.20 -29.65 16 5 H 0.06 3.32 7.33 -2.91 -0.02 3.30 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.78 11.32 21.45 0.24 -53.54 16 8 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 9 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 N -0.60 -26.60 2.75 -837.73 -2.31 -28.90 16 13 C 0.08 2.59 9.12 127.77 1.16 3.76 16 14 C 0.53 23.43 7.43 84.99 0.63 24.06 16 15 O -0.62 -32.59 15.42 -4.68 -0.07 -32.66 16 16 C -0.20 -6.45 8.78 22.30 0.20 -6.26 16 17 C -0.08 -2.09 9.52 67.10 0.64 -1.45 16 18 S -0.07 -1.48 22.02 -56.49 -1.24 -2.72 16 19 C -0.04 -0.59 6.20 71.24 0.44 -0.15 16 20 C -0.03 -0.58 6.58 24.83 0.16 -0.41 16 21 C -0.19 -2.89 10.81 22.19 0.24 -2.65 16 22 C -0.23 -2.89 10.91 22.19 0.24 -2.64 16 23 C -0.03 -0.33 12.09 66.97 0.81 0.48 16 24 O -0.19 -3.48 10.65 -2.55 -0.03 -3.51 16 25 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 29 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.07 2.51 7.02 -2.39 -0.02 2.50 16 31 H 0.09 2.34 6.08 -2.39 -0.01 2.32 16 32 H 0.16 4.02 6.08 -2.91 -0.02 4.01 16 33 H 0.14 4.04 7.41 -2.91 -0.02 4.02 16 34 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.24 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -74.04 338.97 5.62 -68.42 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.06 Total: 12.81 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 5.94 Total: -5.55 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.06 Total: -82.45 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.10 Total: -36.17 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -1.24 Total: -2.72 kcal Total: -74.04 5.62 -68.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084924208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.641 kcal (2) G-P(sol) polarization free energy of solvation -74.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds