Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47630 * 2 1 4 4 O 1.42905 * 109.47038 * 239.99993 * 2 1 3 5 5 C 1.53007 * 109.47214 * 120.00218 * 2 1 3 6 6 N 1.46498 * 109.46662 * 59.99641 * 5 2 1 7 7 C 1.34783 * 119.99450 * 180.02562 * 6 5 2 8 8 O 1.21606 * 120.00135 * 0.02562 * 7 6 5 9 9 C 1.47433 * 119.99777 * 179.97438 * 7 6 5 10 10 C 1.39678 * 120.21285 * 359.97438 * 9 7 6 11 11 C 1.37809 * 119.93418 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.38295 * 0.02562 * 11 10 9 13 13 C 1.37910 * 120.43889 * 0.02562 * 12 11 10 14 14 C 1.39110 * 120.04977 * 359.97438 * 13 12 11 15 15 S 1.76195 * 120.19106 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99901 * 6.85682 * 15 14 13 17 17 H 1.08005 * 119.99976 * 5.65159 * 16 15 14 18 18 C 1.38804 * 120.00248 * 185.65626 * 16 15 14 19 19 N 1.31558 * 119.99610 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00279 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47334 * 89.99556 * 20 18 16 22 22 H 1.48501 * 109.47313 * 210.00161 * 20 18 16 23 23 H 1.48500 * 109.46994 * 329.99936 * 20 18 16 24 24 H 1.09005 * 109.46871 * 300.00193 * 1 2 3 25 25 H 1.09000 * 109.47066 * 59.99438 * 1 2 3 26 26 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47342 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47355 * 300.00385 * 3 2 1 29 29 H 1.09005 * 109.47151 * 59.99978 * 3 2 1 30 30 H 0.96701 * 114.00084 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47129 * 299.99993 * 5 2 1 32 32 H 1.09003 * 109.47146 * 179.97438 * 5 2 1 33 33 H 0.97003 * 120.00826 * 359.97438 * 6 5 2 34 34 H 1.07994 * 120.03669 * 0.27820 * 10 9 7 35 35 H 1.08006 * 119.80802 * 179.97438 * 11 10 9 36 36 H 1.08007 * 119.77539 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.97290 * 179.97438 * 13 12 11 38 38 H 0.96997 * 119.99773 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 7 1.5516 -2.1025 1.2492 7 6 1.8768 -2.9323 2.2603 8 8 2.5752 -2.5343 3.1728 9 6 1.3848 -4.3221 2.2605 10 6 0.5810 -4.7834 1.2155 11 6 0.1238 -6.0834 1.2218 12 6 0.4566 -6.9388 2.2611 13 6 1.2483 -6.4994 3.3013 14 6 1.7197 -5.1907 3.3133 15 16 2.7321 -4.6256 4.6401 16 6 2.9775 -6.1413 5.5046 17 1 2.6078 -7.0666 5.0879 18 6 3.6459 -6.1461 6.7211 19 7 4.0965 -5.0190 7.2284 20 14 3.9066 -7.7529 7.6373 21 1 5.1919 -8.3628 7.2112 22 1 3.9441 -7.4894 9.0982 23 1 2.7913 -8.6841 7.3307 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 2.9703 -0.7122 -1.2328 31 1 1.6767 -0.2075 2.1393 32 1 3.1300 -0.7217 1.2490 33 1 0.9935 -2.4197 0.5219 34 1 0.3213 -4.1231 0.4013 35 1 -0.4979 -6.4378 0.4129 36 1 0.0933 -7.9559 2.2559 37 1 1.5026 -7.1719 4.1072 38 1 4.5632 -5.0223 8.0787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087030726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -90.946299 kcal Electronic energy + Delta-G solvation = -21111.508521 eV Core-core repulsion = 17850.872558 eV Total energy + Delta-G solvation = -3260.635963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11478 -39.49310 -38.66169 -35.34748 -34.76417 -33.23285 -31.92270 -31.78119 -28.30626 -27.84519 -27.47384 -24.37768 -23.38084 -21.60445 -21.42788 -19.97414 -18.92389 -17.76486 -17.42186 -17.06042 -16.63610 -16.50967 -15.90427 -15.58730 -15.45713 -15.35393 -15.01264 -14.68361 -14.29534 -13.98764 -13.44978 -13.42142 -13.30387 -13.05148 -12.98851 -12.89002 -12.85688 -12.61564 -12.53437 -12.05439 -11.67839 -11.51660 -11.42208 -11.32426 -10.97317 -10.42084 -10.14031 -9.91703 -9.76080 -8.46676 -8.45201 -6.24332 0.03302 0.53319 1.26782 1.36532 1.45185 1.64541 2.01981 2.16147 2.27954 2.87572 3.03950 3.24730 3.33305 3.63827 3.88345 3.95738 3.99766 4.06044 4.26793 4.54564 4.59582 4.61561 4.70907 4.78721 4.85955 4.89000 4.94526 5.04606 5.10789 5.24449 5.32763 5.36255 5.45268 5.50991 5.57311 5.67091 6.09763 6.16148 6.61774 6.80140 6.95931 7.35992 8.60431 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.004122 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.274876 B = 6791.714525 C = 7907.242411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.126 3.874 3 C -0.173 4.173 4 O -0.567 6.567 5 C 0.094 3.906 6 N -0.707 5.707 7 C 0.544 3.456 8 O -0.558 6.558 9 C -0.182 4.182 10 C -0.054 4.054 11 C -0.157 4.157 12 C -0.069 4.069 13 C -0.175 4.175 14 C -0.073 4.073 15 S 0.064 5.936 16 C -0.603 4.603 17 H 0.094 0.906 18 C 0.025 3.975 19 N -0.905 5.905 20 Si 0.994 3.006 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.257 1.257 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.390 0.610 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.411 0.589 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 6.293 -17.719 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.085 3.915 3 C -0.231 4.231 4 O -0.375 6.375 5 C -0.031 4.031 6 N -0.362 5.362 7 C 0.333 3.667 8 O -0.438 6.438 9 C -0.196 4.196 10 C -0.074 4.074 11 C -0.180 4.180 12 C -0.090 4.090 13 C -0.200 4.200 14 C -0.191 4.191 15 S 0.323 5.677 16 C -0.750 4.750 17 H 0.112 0.888 18 C -0.181 4.181 19 N -0.540 5.540 20 Si 0.815 3.185 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.181 1.181 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.239 0.761 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.250 0.750 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.168 0.832 37 H 0.137 0.863 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.184 7.810 -16.496 20.002 hybrid contribution 0.505 -1.958 0.712 2.144 sum -7.679 5.851 -15.784 18.503 Atomic orbital electron populations 1.21811 0.91605 1.03087 1.03516 1.21405 0.95853 0.91524 0.82698 1.22396 1.02179 0.94614 1.03867 1.86507 1.28295 1.79561 1.43128 1.22149 0.99215 0.81907 0.99782 1.45559 1.54195 1.11675 1.24734 1.18524 0.80069 0.86031 0.82110 1.90779 1.39210 1.76816 1.37022 1.19500 1.07995 0.93584 0.98492 1.21412 0.93588 0.96984 0.95444 1.21324 1.03318 0.93207 1.00154 1.21545 0.94350 1.00775 0.92328 1.21454 1.02063 0.94926 1.01539 1.22999 0.99538 0.97472 0.99095 1.84907 1.52377 1.12103 1.18296 1.24261 1.43730 0.97032 1.09961 0.88795 1.26148 0.93458 1.01593 0.96899 1.70132 1.35618 1.28620 1.19663 0.85030 0.79345 0.77033 0.77125 1.19134 1.19754 1.18108 0.90370 0.90509 0.92104 0.91515 0.90278 0.90832 0.76074 0.91709 0.92246 0.74981 0.82670 0.81684 0.83189 0.86292 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.67 71.98 0.62 -1.50 16 2 C 0.13 2.07 1.06 -10.79 -0.01 2.06 16 3 C -0.17 -2.22 8.81 71.98 0.63 -1.58 16 4 O -0.57 -9.36 12.72 -148.98 -1.90 -11.25 16 5 C 0.09 2.24 4.78 86.38 0.41 2.65 16 6 N -0.71 -19.57 5.10 -466.34 -2.38 -21.94 16 7 C 0.54 21.59 7.75 86.66 0.67 22.27 16 8 O -0.56 -27.87 13.77 -4.05 -0.06 -27.93 16 9 C -0.18 -7.20 5.89 -19.95 -0.12 -7.31 16 10 C -0.05 -1.53 9.53 22.52 0.21 -1.31 16 11 C -0.16 -3.97 10.02 22.27 0.22 -3.75 16 12 C -0.07 -2.11 10.03 22.29 0.22 -1.89 16 13 C -0.17 -7.36 9.22 22.40 0.21 -7.15 16 14 C -0.07 -3.48 6.14 23.04 0.14 -3.34 16 15 S 0.06 3.77 18.56 -56.49 -1.05 2.72 16 16 C -0.60 -35.59 9.00 67.96 0.61 -34.98 16 17 H 0.09 5.22 4.98 -2.91 -0.01 5.21 16 18 C 0.02 1.42 5.49 84.87 0.47 1.89 16 19 N -0.91 -55.82 13.22 21.65 0.29 -55.54 16 20 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 24 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.94 6.86 -2.39 -0.02 0.92 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.39 4.54 9.05 -74.06 -0.67 3.87 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.41 9.00 5.22 -92.71 -0.48 8.51 16 34 H 0.16 2.98 6.40 -2.91 -0.02 2.96 16 35 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.12 5.41 5.04 -2.91 -0.01 5.40 16 38 H 0.28 15.67 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -79.01 329.62 1.19 -77.82 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -0.05 Total: 23.87 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 4.30 Total: -33.96 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.09 Total: -77.48 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.95 Total: -39.18 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.05 Total: 2.72 kcal Total: -79.01 1.19 -77.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087030726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.124 kcal (2) G-P(sol) polarization free energy of solvation -79.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds