Wall clock time and date at job start Tue Mar 31 2020 07:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.41378 * 2 1 4 4 C 1.55129 * 110.34130 * 122.43620 * 2 1 3 5 5 C 1.55165 * 101.48386 * 156.06313 * 4 2 1 6 6 C 1.54325 * 102.94204 * 324.33288 * 5 4 2 7 7 N 1.47024 * 107.26884 * 22.19608 * 6 5 4 8 8 S 1.65596 * 125.64680 * 181.02397 * 7 6 5 9 9 O 1.42103 * 106.40127 * 336.48200 * 8 7 6 10 10 O 1.42101 * 106.40262 * 203.55943 * 8 7 6 11 11 C 1.76202 * 107.22099 * 90.02014 * 8 7 6 12 12 C 1.38632 * 119.75148 * 89.99635 * 11 8 7 13 13 C 1.37614 * 120.25564 * 179.97438 * 12 11 8 14 14 C 1.40724 * 119.74053 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.24302 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99483 * 155.27683 * 15 14 13 17 17 C 1.39949 * 119.99865 * 335.27599 * 15 14 13 18 18 N 1.30822 * 120.00020 * 342.24322 * 17 15 14 19 19 Si 1.86800 * 119.99611 * 162.24589 * 17 15 14 20 20 H 1.48500 * 109.47013 * 94.66286 * 19 17 15 21 21 H 1.48499 * 109.46799 * 214.66050 * 19 17 15 22 22 H 1.48502 * 109.47283 * 334.66476 * 19 17 15 23 23 C 1.40716 * 119.51138 * 359.97438 * 14 13 12 24 24 C 1.37616 * 119.74368 * 359.97438 * 23 14 13 25 25 H 1.09008 * 109.46866 * 182.29901 * 1 2 3 26 26 H 1.08997 * 109.47410 * 302.29516 * 1 2 3 27 27 H 1.09000 * 109.47386 * 62.29875 * 1 2 3 28 28 H 1.08999 * 111.19424 * 37.96381 * 4 2 1 29 29 H 1.09003 * 110.94200 * 274.05338 * 4 2 1 30 30 H 1.08995 * 110.71721 * 205.96927 * 5 4 2 31 31 H 1.08999 * 110.72001 * 82.69629 * 5 4 2 32 32 H 1.08993 * 109.88155 * 262.77655 * 6 5 4 33 33 H 1.08994 * 109.88065 * 141.60935 * 6 5 4 34 34 H 1.08009 * 119.87467 * 359.70975 * 12 11 8 35 35 H 1.07997 * 120.13371 * 179.97438 * 13 12 11 36 36 H 0.97004 * 119.99816 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.12661 * 179.97438 * 23 14 13 38 38 H 1.08004 * 119.87274 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7802 1.2276 5 6 3.4797 -1.1971 0.7334 6 6 3.2525 -1.4724 -0.7680 7 7 2.0432 -0.7384 -1.1682 8 16 1.3725 -0.7359 -2.6823 9 8 2.4175 -1.0723 -3.5845 10 8 0.6139 0.4614 -2.7831 11 6 0.2162 -2.0641 -2.7428 12 6 -1.1037 -1.8442 -2.3804 13 6 -2.0156 -2.8739 -2.4243 14 6 -1.6035 -4.1541 -2.8385 15 6 -2.5315 -5.2199 -2.8871 16 1 -2.3590 -6.0561 -3.5484 17 6 -3.6732 -5.1910 -2.0782 18 7 -3.7238 -4.3881 -1.0466 19 14 -5.1246 -6.2991 -2.4716 20 1 -5.0200 -7.5515 -1.6806 21 1 -6.3887 -5.6000 -2.1270 22 1 -5.1191 -6.6267 -3.9201 23 6 -0.2613 -4.3657 -3.2040 24 6 0.6330 -3.3209 -3.1534 25 1 -0.3633 -1.0269 0.0412 26 1 -0.3634 0.5490 0.8686 27 1 -0.3634 0.4777 -0.9099 28 1 1.4549 -1.6554 1.4392 29 1 2.1372 -0.1325 2.1017 30 1 3.8163 -2.0992 1.2444 31 1 4.1930 -0.3847 0.8729 32 1 3.1091 -2.5405 -0.9314 33 1 4.1081 -1.1189 -1.3432 34 1 -1.4167 -0.8619 -2.0583 35 1 -3.0433 -2.7004 -2.1412 36 1 -4.5150 -4.3684 -0.4858 37 1 0.0658 -5.3443 -3.5230 38 1 1.6638 -3.4811 -3.4331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:46 Heat of formation + Delta-G solvation = -66.516136 kcal Electronic energy + Delta-G solvation = -22249.025785 eV Core-core repulsion = 18989.449194 eV Total energy + Delta-G solvation = -3259.576592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.45261 -37.56822 -36.54251 -35.10875 -34.03998 -31.25178 -30.62746 -30.22317 -29.45363 -25.82181 -25.39740 -21.87743 -21.32869 -21.15893 -20.90988 -18.20658 -17.59958 -17.18945 -16.38429 -15.92807 -15.52683 -14.86774 -14.18260 -13.86820 -13.68663 -13.48075 -13.33553 -13.24587 -12.63974 -12.38232 -12.21597 -12.01006 -11.87709 -11.62022 -11.44474 -11.32715 -11.28847 -11.19629 -11.15453 -10.96069 -10.87049 -10.61750 -10.42610 -10.39075 -9.74912 -9.58344 -9.48837 -8.57754 -7.93436 -7.69225 -7.14548 -4.79597 1.22022 2.26526 2.87021 2.89090 2.93033 2.95967 3.66066 3.68517 4.24965 4.52900 4.59991 4.74249 5.00701 5.21810 5.32887 5.39261 5.48904 5.55875 5.76333 5.79140 5.92569 5.95418 6.00085 6.06838 6.10205 6.25433 6.32786 6.52132 6.63937 6.67796 6.69257 6.80610 7.00507 7.06096 7.34657 7.43151 7.64117 7.77313 7.97292 8.32158 8.51648 8.65549 9.76968 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.004853 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.322057 B = 5768.587740 C = 6121.699352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.156 3.844 3 H 0.071 0.929 4 C -0.128 4.128 5 C -0.128 4.128 6 C 0.122 3.878 7 N -1.014 6.014 8 S 2.706 3.294 9 O -0.984 6.984 10 O -0.979 6.979 11 C -0.785 4.785 12 C -0.014 4.014 13 C -0.183 4.183 14 C 0.140 3.860 15 C -0.436 4.436 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.766 5.766 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.256 1.256 23 C -0.239 4.239 24 C 0.001 3.999 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.288 0.712 37 H 0.099 0.901 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 3.638 6.100 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.050 3.950 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.167 4.167 6 C -0.003 4.003 7 N -0.850 5.850 8 S 2.807 3.193 9 O -0.975 6.975 10 O -0.970 6.970 11 C -0.881 4.881 12 C -0.035 4.035 13 C -0.204 4.204 14 C 0.136 3.864 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.149 4.149 18 N -0.389 5.389 19 Si 0.739 3.261 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.259 4.259 24 C -0.019 4.019 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.251 4.353 5.564 9.433 hybrid contribution -1.069 -1.182 0.274 1.617 sum 5.182 3.171 5.838 8.426 Atomic orbital electron populations 1.22599 0.94459 1.04109 1.04379 1.21522 0.94287 0.94751 0.84457 0.91123 1.22911 0.96173 1.00649 0.96942 1.22600 0.97443 1.01803 0.94848 1.21595 0.86909 0.96388 0.95455 1.58963 1.37921 1.61002 1.27138 1.00894 0.73132 0.74372 0.70873 1.93463 1.57340 1.85756 1.60955 1.93449 1.72064 1.46099 1.85371 1.29238 1.10755 1.14983 1.33125 1.20303 0.91487 0.97627 0.94037 1.21323 0.99298 0.92136 1.07597 1.17853 0.90868 0.92432 0.85249 1.19933 1.02804 1.04841 1.18762 0.89479 1.26123 0.99799 0.95722 0.93266 1.69817 1.28939 1.30509 1.09628 0.86157 0.79375 0.79965 0.80610 1.19134 1.19585 1.17996 1.21043 0.93868 0.97480 1.13526 1.20158 0.97600 0.91386 0.92765 0.90764 0.91194 0.89582 0.90243 0.90556 0.90436 0.91015 0.91713 0.91673 0.87780 0.86036 0.90043 0.88237 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 7.97 37.16 0.30 -2.72 16 2 C 0.16 2.22 3.69 -66.30 -0.24 1.97 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.47 6.51 -24.46 -0.16 -1.63 16 5 C -0.13 -1.36 6.95 -24.89 -0.17 -1.54 16 6 C 0.12 1.70 6.99 -3.06 -0.02 1.68 16 7 N -1.01 -16.81 3.58 -104.33 -0.37 -17.18 16 8 S 2.71 54.99 5.36 -107.50 -0.58 54.41 16 9 O -0.98 -21.78 16.84 -57.17 -0.96 -22.74 16 10 O -0.98 -21.27 14.71 -57.17 -0.84 -22.11 16 11 C -0.78 -17.62 6.00 -39.29 -0.24 -17.86 16 12 C -0.01 -0.33 8.16 -39.66 -0.32 -0.66 16 13 C -0.18 -4.57 8.70 -38.87 -0.34 -4.91 16 14 C 0.14 3.55 5.57 -106.82 -0.60 2.95 16 15 C -0.44 -10.70 9.05 -37.74 -0.34 -11.05 16 16 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 18 N -0.77 -18.06 10.97 55.55 0.61 -17.45 16 19 Si 0.92 16.97 29.59 -169.99 -5.03 11.94 16 20 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 23 C -0.24 -5.69 9.80 -38.87 -0.38 -6.07 16 24 C 0.00 0.02 9.49 -39.66 -0.38 -0.35 16 25 H 0.07 1.25 7.27 -51.92 -0.38 0.87 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.49 4.82 -51.93 -0.25 1.24 16 28 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 2.23 6.03 -52.48 -0.32 1.92 16 35 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 36 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.10 2.12 7.60 -52.48 -0.40 1.72 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -29.06 317.59 -10.39 -39.45 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.02 Total: 7.50 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: -2.98 Total: -38.59 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.24 Total: -34.64 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.80 Total: -44.86 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.58 Total: 54.41 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.06 -10.39 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.068 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds