Wall clock time and date at job start Tue Mar 31 2020 07:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.41378 * 2 1 4 4 C 1.55129 * 110.34130 * 122.43620 * 2 1 3 5 5 C 1.55165 * 101.48386 * 156.06313 * 4 2 1 6 6 C 1.54325 * 102.94204 * 324.33288 * 5 4 2 7 7 N 1.47024 * 107.26884 * 22.19608 * 6 5 4 8 8 S 1.65596 * 125.64680 * 181.02397 * 7 6 5 9 9 O 1.42103 * 106.40127 * 336.48200 * 8 7 6 10 10 O 1.42101 * 106.40262 * 203.55943 * 8 7 6 11 11 C 1.76202 * 107.22099 * 90.02014 * 8 7 6 12 12 C 1.38632 * 119.75148 * 89.99635 * 11 8 7 13 13 C 1.37614 * 120.25564 * 179.97438 * 12 11 8 14 14 C 1.40724 * 119.74053 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.24302 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99483 * 155.27683 * 15 14 13 17 17 C 1.39949 * 119.99865 * 335.27599 * 15 14 13 18 18 N 1.30822 * 120.00020 * 342.24322 * 17 15 14 19 19 Si 1.86800 * 119.99611 * 162.24589 * 17 15 14 20 20 H 1.48500 * 109.47013 * 94.66286 * 19 17 15 21 21 H 1.48499 * 109.46799 * 214.66050 * 19 17 15 22 22 H 1.48502 * 109.47283 * 334.66476 * 19 17 15 23 23 C 1.40716 * 119.51138 * 359.97438 * 14 13 12 24 24 C 1.37616 * 119.74368 * 359.97438 * 23 14 13 25 25 H 1.09008 * 109.46866 * 182.29901 * 1 2 3 26 26 H 1.08997 * 109.47410 * 302.29516 * 1 2 3 27 27 H 1.09000 * 109.47386 * 62.29875 * 1 2 3 28 28 H 1.08999 * 111.19424 * 37.96381 * 4 2 1 29 29 H 1.09003 * 110.94200 * 274.05338 * 4 2 1 30 30 H 1.08995 * 110.71721 * 205.96927 * 5 4 2 31 31 H 1.08999 * 110.72001 * 82.69629 * 5 4 2 32 32 H 1.08993 * 109.88155 * 262.77655 * 6 5 4 33 33 H 1.08994 * 109.88065 * 141.60935 * 6 5 4 34 34 H 1.08009 * 119.87467 * 359.70975 * 12 11 8 35 35 H 1.07997 * 120.13371 * 179.97438 * 13 12 11 36 36 H 0.97004 * 119.99816 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.12661 * 179.97438 * 23 14 13 38 38 H 1.08004 * 119.87274 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7802 1.2276 5 6 3.4797 -1.1971 0.7334 6 6 3.2525 -1.4724 -0.7680 7 7 2.0432 -0.7384 -1.1682 8 16 1.3725 -0.7359 -2.6823 9 8 2.4175 -1.0723 -3.5845 10 8 0.6139 0.4614 -2.7831 11 6 0.2162 -2.0641 -2.7428 12 6 -1.1037 -1.8442 -2.3804 13 6 -2.0156 -2.8739 -2.4243 14 6 -1.6035 -4.1541 -2.8385 15 6 -2.5315 -5.2199 -2.8871 16 1 -2.3590 -6.0561 -3.5484 17 6 -3.6732 -5.1910 -2.0782 18 7 -3.7238 -4.3881 -1.0466 19 14 -5.1246 -6.2991 -2.4716 20 1 -5.0200 -7.5515 -1.6806 21 1 -6.3887 -5.6000 -2.1270 22 1 -5.1191 -6.6267 -3.9201 23 6 -0.2613 -4.3657 -3.2040 24 6 0.6330 -3.3209 -3.1534 25 1 -0.3633 -1.0269 0.0412 26 1 -0.3634 0.5490 0.8686 27 1 -0.3634 0.4777 -0.9099 28 1 1.4549 -1.6554 1.4392 29 1 2.1372 -0.1325 2.1017 30 1 3.8163 -2.0992 1.2444 31 1 4.1930 -0.3847 0.8729 32 1 3.1091 -2.5405 -0.9314 33 1 4.1081 -1.1189 -1.3432 34 1 -1.4167 -0.8619 -2.0583 35 1 -3.0433 -2.7004 -2.1412 36 1 -4.5150 -4.3684 -0.4858 37 1 0.0658 -5.3443 -3.5230 38 1 1.6638 -3.4811 -3.4331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:46 Heat of formation + Delta-G solvation = -84.005297 kcal Electronic energy + Delta-G solvation = -22249.784172 eV Core-core repulsion = 18989.449194 eV Total energy + Delta-G solvation = -3260.334979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.58545 -39.37381 -38.23391 -36.82020 -35.81929 -32.44925 -31.97882 -31.76356 -31.29114 -27.63320 -26.51890 -23.41809 -22.97950 -22.76441 -21.96007 -19.74507 -19.41270 -18.72992 -17.92716 -17.22478 -17.17250 -16.37622 -15.88554 -15.28144 -15.02461 -14.93308 -14.82565 -14.67450 -14.15037 -13.95399 -13.68179 -13.57203 -13.29623 -13.16337 -12.96884 -12.92734 -12.90511 -12.72528 -12.60066 -12.36324 -12.02051 -11.98336 -11.64804 -11.51688 -11.47493 -11.32775 -11.22232 -9.92361 -9.74031 -9.56386 -8.88307 -6.65846 -0.37685 0.47265 1.03952 1.35161 1.41356 1.51967 2.10685 2.18537 2.52288 2.91679 3.34862 3.49727 3.67007 3.91604 4.05896 4.25599 4.28790 4.31342 4.40671 4.53896 4.68868 4.78522 4.84334 4.91653 4.92210 5.02829 5.08447 5.08909 5.20969 5.22957 5.25296 5.40847 5.45545 5.51160 5.57311 5.64766 5.77812 5.91871 6.13694 6.47383 6.66845 6.79402 8.06967 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.004853 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.322057 B = 5768.587740 C = 6121.699352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.122 4.122 5 C -0.117 4.117 6 C 0.106 3.894 7 N -1.014 6.014 8 S 2.731 3.269 9 O -1.003 7.003 10 O -0.995 6.995 11 C -0.797 4.797 12 C -0.014 4.014 13 C -0.207 4.207 14 C 0.111 3.889 15 C -0.466 4.466 16 H 0.091 0.909 17 C 0.036 3.964 18 N -0.794 5.794 19 Si 0.991 3.009 20 H -0.257 1.257 21 H -0.263 1.263 22 H -0.257 1.257 23 C -0.256 4.256 24 C -0.004 4.004 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.299 0.701 37 H 0.111 0.889 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 3.809 7.571 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.156 4.156 6 C -0.018 4.018 7 N -0.853 5.853 8 S 2.829 3.171 9 O -0.993 6.993 10 O -0.986 6.986 11 C -0.890 4.890 12 C -0.034 4.034 13 C -0.227 4.227 14 C 0.108 3.892 15 C -0.493 4.493 16 H 0.109 0.891 17 C -0.184 4.184 18 N -0.417 5.417 19 Si 0.810 3.190 20 H -0.181 1.181 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.277 4.277 24 C -0.024 4.024 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.987 4.507 7.029 10.888 hybrid contribution -1.204 -1.140 -0.120 1.663 sum 5.783 3.367 6.909 9.619 Atomic orbital electron populations 1.22590 0.95684 1.02815 1.04562 1.21875 0.93462 0.95978 0.84693 0.89227 1.22913 0.96159 1.00364 0.96626 1.22629 0.97379 1.03584 0.91977 1.21948 0.85817 0.95833 0.98240 1.58682 1.38547 1.61474 1.26635 1.00071 0.72287 0.73220 0.71502 1.93432 1.57459 1.85843 1.62609 1.93426 1.72641 1.46346 1.86183 1.29699 1.11318 1.15838 1.32151 1.20448 0.91775 0.97703 0.93477 1.21334 0.99243 0.92847 1.09294 1.18202 0.91901 0.93006 0.86120 1.20222 1.04163 1.05096 1.19787 0.89100 1.26992 1.01869 0.97054 0.92482 1.69844 1.30114 1.31498 1.10244 0.85051 0.75669 0.78077 0.80221 1.18135 1.18669 1.18023 1.21262 0.93725 0.98521 1.14148 1.20420 0.98342 0.91340 0.92272 0.92981 0.88279 0.91913 0.91515 0.87315 0.88561 0.88677 0.92363 0.90910 0.86763 0.87101 0.89012 0.87077 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.91 7.97 71.98 0.57 -5.34 16 2 C 0.14 3.81 3.69 45.54 0.17 3.98 16 3 H 0.09 2.06 8.14 -2.38 -0.02 2.05 16 4 C -0.12 -2.40 6.51 32.07 0.21 -2.19 16 5 C -0.12 -2.06 6.95 31.79 0.22 -1.84 16 6 C 0.11 2.74 6.99 86.73 0.61 3.35 16 7 N -1.01 -32.29 3.58 -483.99 -1.73 -34.02 16 8 S 2.73 110.39 5.36 -56.49 -0.30 110.09 16 9 O -1.00 -43.91 16.84 -128.00 -2.16 -46.06 16 10 O -1.00 -43.23 14.71 -128.00 -1.88 -45.11 16 11 C -0.80 -36.40 6.00 22.46 0.13 -36.27 16 12 C -0.01 -0.68 8.16 22.22 0.18 -0.49 16 13 C -0.21 -10.77 8.70 22.73 0.20 -10.57 16 14 C 0.11 5.86 5.57 -21.29 -0.12 5.74 16 15 C -0.47 -23.49 9.05 23.46 0.21 -23.27 16 16 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 17 C 0.04 1.65 5.14 85.26 0.44 2.09 16 18 N -0.79 -38.10 10.97 21.83 0.24 -37.86 16 19 Si 0.99 34.55 29.59 68.60 2.03 36.58 16 20 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 21 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 22 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 23 C -0.26 -12.55 9.80 22.73 0.22 -12.33 16 24 C 0.00 -0.18 9.49 22.22 0.21 0.03 16 25 H 0.05 1.76 7.27 -2.38 -0.02 1.74 16 26 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.16 4.82 -2.39 -0.01 2.15 16 28 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 5.09 6.03 -2.91 -0.02 5.08 16 35 H 0.11 5.87 6.18 -2.91 -0.02 5.86 16 36 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 37 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.12 5.00 7.60 -2.91 -0.02 4.98 16 Total: -1.00 -63.87 317.59 0.51 -63.36 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 1.06 Total: 30.15 kcal Atomic # 6 Polarization: -80.37 SS G_CDS: 3.26 Total: -77.12 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.49 Total: -71.88 kcal Atomic # 8 Polarization: -87.13 SS G_CDS: -4.04 Total: -91.17 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Atomic # 16 Polarization: 110.39 SS G_CDS: -0.30 Total: 110.09 kcal Total: -63.87 0.51 -63.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.648 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds