Wall clock time and date at job start Tue Mar 31 2020 07:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.63862 * 2 1 4 4 C 1.55445 * 110.86318 * 236.77772 * 2 1 3 5 5 C 1.54908 * 101.45117 * 206.07002 * 4 2 1 6 6 N 1.47427 * 104.92922 * 37.00431 * 5 4 2 7 7 S 1.65592 * 125.64839 * 155.79438 * 6 5 4 8 8 O 1.42105 * 106.40293 * 203.56639 * 7 6 5 9 9 O 1.42101 * 106.40256 * 336.48492 * 7 6 5 10 10 C 1.76201 * 107.21827 * 90.02602 * 7 6 5 11 11 C 1.38633 * 119.74676 * 269.72002 * 10 7 6 12 12 C 1.37615 * 120.24847 * 179.76189 * 11 10 7 13 13 C 1.40721 * 119.74370 * 0.49540 * 12 11 10 14 14 C 1.41397 * 120.24752 * 179.78782 * 13 12 11 15 15 H 1.07997 * 119.99947 * 204.37078 * 14 13 12 16 16 C 1.39952 * 119.99606 * 24.37312 * 14 13 12 17 17 N 1.30814 * 120.00257 * 17.86965 * 16 14 13 18 18 Si 1.86798 * 119.99525 * 197.87112 * 16 14 13 19 19 H 1.48500 * 109.47661 * 59.99984 * 18 16 14 20 20 H 1.48505 * 109.47127 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47100 * 299.99429 * 18 16 14 22 22 C 1.40717 * 119.50758 * 359.76217 * 13 12 11 23 23 C 1.37616 * 119.74773 * 0.02562 * 22 13 12 24 24 C 1.47019 * 108.70166 * 335.81597 * 6 5 4 25 25 H 1.08995 * 109.47089 * 296.85622 * 1 2 3 26 26 H 1.08997 * 109.47374 * 56.86218 * 1 2 3 27 27 H 1.09005 * 109.46740 * 176.86019 * 1 2 3 28 28 H 1.09002 * 111.11311 * 88.01904 * 4 2 1 29 29 H 1.09000 * 111.01368 * 324.08082 * 4 2 1 30 30 H 1.08995 * 110.36780 * 278.10891 * 5 4 2 31 31 H 1.08996 * 110.36750 * 155.89661 * 5 4 2 32 32 H 1.07998 * 119.87793 * 0.02562 * 11 10 7 33 33 H 1.07998 * 120.13576 * 180.28160 * 12 11 10 34 34 H 0.97001 * 120.00249 * 179.97438 * 17 16 14 35 35 H 1.08004 * 120.12526 * 179.97438 * 22 13 12 36 36 H 1.08006 * 119.87613 * 180.02562 * 23 22 13 37 37 H 1.09002 * 109.88728 * 120.47470 * 24 6 5 38 38 H 1.09001 * 109.88521 * 241.48783 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0836 -0.7958 -1.2151 5 6 3.4675 -1.2453 -0.6837 6 7 3.2472 -1.5460 0.7427 7 16 4.1663 -2.5674 1.6669 8 8 3.3379 -2.9918 2.7407 9 8 4.7931 -3.4695 0.7654 10 6 5.4557 -1.6041 2.3839 11 6 6.6619 -1.4629 1.7153 12 6 7.6742 -0.7089 2.2634 13 6 7.4851 -0.0887 3.5123 14 6 8.5196 0.6847 4.0875 15 1 8.5554 0.8285 5.1573 16 6 9.4971 1.2640 3.2704 17 7 9.2821 1.3968 1.9869 18 14 11.1090 1.8473 4.0127 19 1 11.8058 0.6998 4.6474 20 1 11.9676 2.4192 2.9445 21 1 10.8347 2.8876 5.0365 22 6 6.2584 -0.2434 4.1843 23 6 5.2585 -0.9984 3.6151 24 6 2.0761 -0.7891 1.2086 25 1 -0.3633 0.4642 0.9168 26 1 -0.3634 0.5618 -0.8605 27 1 -0.3633 -1.0262 -0.0563 28 1 2.1906 -0.1536 -2.0893 29 1 1.4528 -1.6561 -1.4391 30 1 4.1955 -0.4417 -0.7939 31 1 3.8052 -2.1372 -1.2115 32 1 6.8062 -1.9429 0.7586 33 1 8.6115 -0.5964 1.7389 34 1 9.9595 1.7986 1.4207 35 1 6.1026 0.2279 5.1436 36 1 4.3161 -1.1182 4.1289 37 1 1.3141 -1.4753 1.5781 38 1 2.3706 -0.1010 2.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:45 Heat of formation + Delta-G solvation = -70.828445 kcal Electronic energy + Delta-G solvation = -21705.248826 eV Core-core repulsion = 18445.485239 eV Total energy + Delta-G solvation = -3259.763588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.47308 -37.56538 -36.48762 -35.11324 -34.04051 -32.37227 -30.25136 -29.48678 -29.36462 -25.95431 -25.78807 -22.18136 -21.47216 -21.11464 -20.27240 -18.45478 -17.62190 -17.16662 -16.70494 -15.99403 -15.44550 -14.86484 -14.14949 -13.89507 -13.62708 -13.44985 -13.32193 -13.15794 -12.94368 -12.52581 -12.38021 -12.18311 -11.94537 -11.77457 -11.47049 -11.39852 -11.27835 -11.22735 -11.12992 -10.92461 -10.89320 -10.74020 -10.57627 -10.42919 -9.75341 -9.59370 -9.50122 -8.57723 -7.95262 -7.70021 -7.14617 -4.80200 1.20365 2.26616 2.87579 2.89115 2.92294 2.95009 3.65865 3.69624 4.24650 4.46480 4.55008 4.69088 4.83916 5.16131 5.34127 5.39615 5.41343 5.49038 5.59246 5.70761 5.78662 5.88779 5.95937 6.05785 6.06886 6.11453 6.12057 6.31122 6.46278 6.62467 6.68078 6.77417 6.98958 7.05704 7.34087 7.42818 7.63876 7.76885 7.96793 8.31732 8.51131 8.65286 9.76848 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.004242 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.578782 B = 6599.766001 C = 6929.407907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.125 4.125 5 C 0.117 3.883 6 N -1.017 6.017 7 S 2.707 3.293 8 O -0.982 6.982 9 O -0.980 6.980 10 C -0.787 4.787 11 C -0.015 4.015 12 C -0.183 4.183 13 C 0.140 3.860 14 C -0.436 4.436 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.766 5.766 18 Si 0.918 3.082 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.239 4.239 23 C 0.001 3.999 24 C 0.126 3.874 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.289 0.711 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 1.285 -5.358 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.009 4.009 6 N -0.853 5.853 7 S 2.808 3.192 8 O -0.973 6.973 9 O -0.971 6.971 10 C -0.883 4.883 11 C -0.036 4.036 12 C -0.203 4.203 13 C 0.136 3.864 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.389 5.389 18 Si 0.741 3.259 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.260 4.260 23 C -0.019 4.019 24 C 0.000 4.000 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.302 0.400 -5.459 10.793 hybrid contribution 1.209 1.090 0.416 1.680 sum -8.093 1.490 -5.043 9.651 Atomic orbital electron populations 1.21756 0.94262 1.02037 1.01872 1.22274 0.95822 0.99606 0.94585 0.89767 1.22892 0.96116 0.99964 0.97391 1.21949 0.97368 1.00963 0.80578 1.58850 1.42210 1.63791 1.20418 1.00867 0.72954 0.73240 0.72150 1.93469 1.68632 1.80481 1.54680 1.93470 1.76881 1.61225 1.65549 1.29254 1.15439 1.33335 1.10269 1.20250 0.92094 0.94531 0.96687 1.21333 0.99351 1.00904 0.98745 1.17847 0.90473 0.87112 0.90973 1.19919 1.06071 1.24794 0.95576 0.89457 1.26130 1.00266 0.93974 0.94561 1.69806 1.34268 1.29024 1.05775 0.86193 0.79982 0.79948 0.79806 1.18332 1.19887 1.18559 1.21050 0.94806 1.07837 1.02265 1.20162 0.97407 0.92095 0.92233 1.21694 0.87249 0.94439 0.96578 0.92333 0.92413 0.92418 0.90270 0.90786 0.91529 0.90283 0.87945 0.85966 0.89935 0.88192 0.87866 0.91516 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.15 37.16 0.34 -0.89 16 2 C -0.10 -1.12 3.54 -88.63 -0.31 -1.43 16 3 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 4 C -0.12 -1.32 6.56 -24.43 -0.16 -1.48 16 5 C 0.12 1.63 7.10 -2.53 -0.02 1.61 16 6 N -1.02 -16.77 3.70 -111.42 -0.41 -17.18 16 7 S 2.71 54.91 5.93 -107.50 -0.64 54.27 16 8 O -0.98 -21.50 16.84 -57.17 -0.96 -22.46 16 9 O -0.98 -21.65 16.57 -57.17 -0.95 -22.60 16 10 C -0.79 -17.88 6.00 -39.29 -0.24 -18.12 16 11 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 12 C -0.18 -4.64 8.70 -38.87 -0.34 -4.98 16 13 C 0.14 3.58 5.58 -106.82 -0.60 2.98 16 14 C -0.44 -10.78 9.05 -37.74 -0.34 -11.12 16 15 H 0.09 2.03 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 17 N -0.77 -18.22 10.95 55.55 0.61 -17.62 16 18 Si 0.92 17.05 29.59 -169.99 -5.03 12.02 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 22 C -0.24 -5.74 9.80 -38.87 -0.38 -6.12 16 23 C 0.00 0.03 9.49 -39.66 -0.38 -0.35 16 24 C 0.13 1.76 6.59 -3.07 -0.02 1.74 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.09 7.78 -51.93 -0.40 0.69 16 32 H 0.10 2.26 7.59 -52.49 -0.40 1.86 16 33 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 34 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 35 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.10 2.13 7.60 -52.48 -0.40 1.74 16 37 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 327.30 15.07 4.93 4.93 Total: -1.00 -29.66 327.30 -10.63 -40.29 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.28 Total: 5.65 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: -2.91 Total: -37.30 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.20 Total: -34.80 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.91 Total: -45.06 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.64 Total: 54.27 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.66 -10.63 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.537 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds