Wall clock time and date at job start Tue Mar 31 2020 07:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.63862 * 2 1 4 4 C 1.55445 * 110.86318 * 236.77772 * 2 1 3 5 5 C 1.54908 * 101.45117 * 206.07002 * 4 2 1 6 6 N 1.47427 * 104.92922 * 37.00431 * 5 4 2 7 7 S 1.65592 * 125.64839 * 155.79438 * 6 5 4 8 8 O 1.42105 * 106.40293 * 203.56639 * 7 6 5 9 9 O 1.42101 * 106.40256 * 336.48492 * 7 6 5 10 10 C 1.76201 * 107.21827 * 90.02602 * 7 6 5 11 11 C 1.38633 * 119.74676 * 269.72002 * 10 7 6 12 12 C 1.37615 * 120.24847 * 179.76189 * 11 10 7 13 13 C 1.40721 * 119.74370 * 0.49540 * 12 11 10 14 14 C 1.41397 * 120.24752 * 179.78782 * 13 12 11 15 15 H 1.07997 * 119.99947 * 204.37078 * 14 13 12 16 16 C 1.39952 * 119.99606 * 24.37312 * 14 13 12 17 17 N 1.30814 * 120.00257 * 17.86965 * 16 14 13 18 18 Si 1.86798 * 119.99525 * 197.87112 * 16 14 13 19 19 H 1.48500 * 109.47661 * 59.99984 * 18 16 14 20 20 H 1.48505 * 109.47127 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47100 * 299.99429 * 18 16 14 22 22 C 1.40717 * 119.50758 * 359.76217 * 13 12 11 23 23 C 1.37616 * 119.74773 * 0.02562 * 22 13 12 24 24 C 1.47019 * 108.70166 * 335.81597 * 6 5 4 25 25 H 1.08995 * 109.47089 * 296.85622 * 1 2 3 26 26 H 1.08997 * 109.47374 * 56.86218 * 1 2 3 27 27 H 1.09005 * 109.46740 * 176.86019 * 1 2 3 28 28 H 1.09002 * 111.11311 * 88.01904 * 4 2 1 29 29 H 1.09000 * 111.01368 * 324.08082 * 4 2 1 30 30 H 1.08995 * 110.36780 * 278.10891 * 5 4 2 31 31 H 1.08996 * 110.36750 * 155.89661 * 5 4 2 32 32 H 1.07998 * 119.87793 * 0.02562 * 11 10 7 33 33 H 1.07998 * 120.13576 * 180.28160 * 12 11 10 34 34 H 0.97001 * 120.00249 * 179.97438 * 17 16 14 35 35 H 1.08004 * 120.12526 * 179.97438 * 22 13 12 36 36 H 1.08006 * 119.87613 * 180.02562 * 23 22 13 37 37 H 1.09002 * 109.88728 * 120.47470 * 24 6 5 38 38 H 1.09001 * 109.88521 * 241.48783 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0836 -0.7958 -1.2151 5 6 3.4675 -1.2453 -0.6837 6 7 3.2472 -1.5460 0.7427 7 16 4.1663 -2.5674 1.6669 8 8 3.3379 -2.9918 2.7407 9 8 4.7931 -3.4695 0.7654 10 6 5.4557 -1.6041 2.3839 11 6 6.6619 -1.4629 1.7153 12 6 7.6742 -0.7089 2.2634 13 6 7.4851 -0.0887 3.5123 14 6 8.5196 0.6847 4.0875 15 1 8.5554 0.8285 5.1573 16 6 9.4971 1.2640 3.2704 17 7 9.2821 1.3968 1.9869 18 14 11.1090 1.8473 4.0127 19 1 11.8058 0.6998 4.6474 20 1 11.9676 2.4192 2.9445 21 1 10.8347 2.8876 5.0365 22 6 6.2584 -0.2434 4.1843 23 6 5.2585 -0.9984 3.6151 24 6 2.0761 -0.7891 1.2086 25 1 -0.3633 0.4642 0.9168 26 1 -0.3634 0.5618 -0.8605 27 1 -0.3633 -1.0262 -0.0563 28 1 2.1906 -0.1536 -2.0893 29 1 1.4528 -1.6561 -1.4391 30 1 4.1955 -0.4417 -0.7939 31 1 3.8052 -2.1372 -1.2115 32 1 6.8062 -1.9429 0.7586 33 1 8.6115 -0.5964 1.7389 34 1 9.9595 1.7986 1.4207 35 1 6.1026 0.2279 5.1436 36 1 4.3161 -1.1182 4.1289 37 1 1.3141 -1.4753 1.5781 38 1 2.3706 -0.1010 2.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:44 Heat of formation + Delta-G solvation = -88.629966 kcal Electronic energy + Delta-G solvation = -21706.020758 eV Core-core repulsion = 18445.485239 eV Total energy + Delta-G solvation = -3260.535519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52476 -39.41050 -38.20456 -36.83815 -35.83176 -33.38513 -32.09507 -31.33288 -30.41051 -27.64517 -26.86806 -23.40916 -23.22555 -22.92370 -21.18357 -19.96362 -19.45269 -18.71992 -18.27243 -17.38583 -16.99921 -16.41644 -15.85730 -15.31945 -15.01617 -14.89686 -14.61414 -14.43254 -14.13331 -13.98924 -13.82595 -13.61272 -13.52543 -13.19759 -13.08424 -12.93505 -12.91861 -12.83391 -12.61214 -12.34519 -12.02462 -11.85164 -11.60219 -11.57757 -11.44930 -11.36249 -11.23723 -9.92829 -9.78756 -9.59184 -8.89432 -6.67581 -0.40446 0.45544 1.01994 1.34891 1.43602 1.49355 2.10154 2.18042 2.51151 2.91159 3.30684 3.48771 3.66409 3.83907 4.01486 4.26223 4.27973 4.37893 4.52105 4.59630 4.65340 4.80680 4.83426 4.88594 4.91496 4.98492 5.05618 5.12835 5.19870 5.20867 5.23713 5.32732 5.47920 5.52458 5.55557 5.59151 5.74892 5.90253 6.11945 6.45574 6.65121 6.77791 8.05700 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.004242 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.578782 B = 6599.766001 C = 6929.407907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.114 4.114 5 C 0.103 3.897 6 N -1.016 6.016 7 S 2.735 3.265 8 O -0.997 6.997 9 O -1.000 7.000 10 C -0.800 4.800 11 C -0.021 4.021 12 C -0.207 4.207 13 C 0.111 3.889 14 C -0.466 4.466 15 H 0.093 0.907 16 C 0.035 3.965 17 N -0.795 5.795 18 Si 0.992 3.008 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.254 1.254 22 C -0.257 4.257 23 C -0.003 4.003 24 C 0.112 3.888 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.299 0.701 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 2.154 -6.045 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.022 4.022 6 N -0.855 5.855 7 S 2.833 3.167 8 O -0.988 6.988 9 O -0.990 6.990 10 C -0.893 4.893 11 C -0.041 4.041 12 C -0.227 4.227 13 C 0.107 3.893 14 C -0.492 4.492 15 H 0.111 0.889 16 C -0.184 4.184 17 N -0.417 5.417 18 Si 0.811 3.189 19 H -0.183 1.183 20 H -0.187 1.187 21 H -0.177 1.177 22 C -0.277 4.277 23 C -0.023 4.023 24 C -0.013 4.013 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.090 0.910 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.187 1.278 -6.132 11.959 hybrid contribution 1.376 0.801 0.558 1.687 sum -8.811 2.079 -5.574 10.631 Atomic orbital electron populations 1.21743 0.92300 1.02554 1.02945 1.22295 0.97307 0.99184 0.92905 0.89324 1.22916 0.93699 1.00723 0.97971 1.22257 0.99812 1.01020 0.79072 1.58544 1.42037 1.63647 1.21246 0.99961 0.72228 0.72844 0.71677 1.93439 1.68555 1.80979 1.55853 1.93437 1.77569 1.62218 1.65813 1.29728 1.16333 1.32720 1.10520 1.20432 0.92288 0.94239 0.97157 1.21356 0.99590 1.02381 0.99370 1.18200 0.91576 0.87969 0.91510 1.20235 1.07178 1.25619 0.96214 0.88916 1.27018 1.03217 0.93465 0.94735 1.69834 1.35690 1.29171 1.07046 0.85085 0.75208 0.79409 0.79178 1.18309 1.18662 1.17740 1.21285 0.94758 1.08661 1.02997 1.20437 0.97931 0.91561 0.92349 1.22031 0.86386 0.94652 0.98206 0.91968 0.90607 0.92278 0.87629 0.89790 0.91732 0.90451 0.86916 0.86992 0.88935 0.86918 0.85874 0.91020 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.15 71.98 0.66 -1.30 16 2 C -0.10 -1.84 3.54 -9.50 -0.03 -1.88 16 3 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 4 C -0.11 -2.09 6.56 32.09 0.21 -1.88 16 5 C 0.10 2.73 7.10 86.85 0.62 3.34 16 6 N -1.02 -32.52 3.70 -506.44 -1.87 -34.39 16 7 S 2.73 110.19 5.93 -56.49 -0.34 109.85 16 8 O -1.00 -43.13 16.84 -128.00 -2.16 -45.28 16 9 O -1.00 -43.99 16.57 -128.00 -2.12 -46.12 16 10 C -0.80 -36.76 6.00 22.46 0.13 -36.63 16 11 C -0.02 -1.03 9.49 22.22 0.21 -0.82 16 12 C -0.21 -10.86 8.70 22.73 0.20 -10.67 16 13 C 0.11 5.87 5.58 -21.29 -0.12 5.75 16 14 C -0.47 -23.49 9.05 23.46 0.21 -23.28 16 15 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 16 C 0.04 1.64 5.14 85.26 0.44 2.08 16 17 N -0.79 -38.32 10.95 21.83 0.24 -38.08 16 18 Si 0.99 34.50 29.59 68.60 2.03 36.53 16 19 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 20 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 21 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 22 C -0.26 -12.58 9.80 22.73 0.22 -12.36 16 23 C 0.00 -0.14 9.49 22.22 0.21 0.07 16 24 C 0.11 2.97 6.59 86.73 0.57 3.54 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.84 8.12 -2.38 -0.02 0.82 16 28 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.40 8.03 -2.39 -0.02 1.38 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 2.06 7.78 -2.39 -0.02 2.04 16 32 H 0.11 5.09 7.59 -2.91 -0.02 5.07 16 33 H 0.11 5.98 6.15 -2.91 -0.02 5.96 16 34 H 0.30 12.80 8.30 -92.71 -0.77 12.04 16 35 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 36 H 0.12 5.06 7.60 -2.91 -0.02 5.04 16 37 H 0.07 1.82 7.82 -2.39 -0.02 1.80 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -64.22 327.30 0.37 -63.85 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 1.05 Total: 27.66 kcal Atomic # 6 Polarization: -77.56 SS G_CDS: 3.53 Total: -74.02 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -1.63 Total: -72.47 kcal Atomic # 8 Polarization: -87.12 SS G_CDS: -4.28 Total: -91.40 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Atomic # 16 Polarization: 110.19 SS G_CDS: -0.34 Total: 109.85 kcal Total: -64.22 0.37 -63.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.780 kcal (2) G-P(sol) polarization free energy of solvation -64.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds