Wall clock time and date at job start Tue Mar 31 2020 07:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.64269 * 2 1 4 4 C 1.55152 * 110.72452 * 123.15053 * 2 1 3 5 5 C 1.54908 * 101.58428 * 153.86550 * 4 2 1 6 6 N 1.47428 * 104.82954 * 322.98935 * 5 4 2 7 7 S 1.65603 * 125.64676 * 204.09337 * 6 5 4 8 8 O 1.42099 * 106.40467 * 336.48458 * 7 6 5 9 9 O 1.42097 * 106.40296 * 203.56167 * 7 6 5 10 10 C 1.76201 * 107.21719 * 90.02615 * 7 6 5 11 11 C 1.38635 * 119.75350 * 90.00136 * 10 7 6 12 12 C 1.37611 * 120.25212 * 179.97438 * 11 10 7 13 13 C 1.40717 * 119.74429 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24544 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 334.84990 * 14 13 12 16 16 C 1.39947 * 120.00447 * 154.85088 * 14 13 12 17 17 N 1.30829 * 119.99580 * 334.27844 * 16 14 13 18 18 Si 1.86794 * 120.00413 * 154.27772 * 16 14 13 19 19 H 1.48504 * 109.47556 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47307 * 60.00117 * 18 16 14 21 21 H 1.48499 * 109.47060 * 300.00218 * 18 16 14 22 22 C 1.40717 * 119.51251 * 0.27207 * 13 12 11 23 23 C 1.37622 * 119.74258 * 359.45159 * 22 13 12 24 24 C 1.47017 * 108.70356 * 24.35511 * 6 5 4 25 25 H 1.09000 * 109.46638 * 298.30097 * 1 2 3 26 26 H 1.08995 * 109.47171 * 58.30226 * 1 2 3 27 27 H 1.09004 * 109.46842 * 178.30969 * 1 2 3 28 28 H 1.09001 * 111.00241 * 35.78907 * 4 2 1 29 29 H 1.09002 * 111.00500 * 271.93799 * 4 2 1 30 30 H 1.08999 * 110.36718 * 204.15508 * 5 4 2 31 31 H 1.08995 * 110.46165 * 81.87258 * 5 4 2 32 32 H 1.07996 * 119.87152 * 359.95128 * 11 10 7 33 33 H 1.07999 * 120.13162 * 179.97438 * 12 11 10 34 34 H 0.96996 * 120.00212 * 354.29995 * 17 16 14 35 35 H 1.07998 * 120.12873 * 179.72603 * 22 13 12 36 36 H 1.07997 * 119.87625 * 180.27232 * 23 22 13 37 37 H 1.09001 * 109.87781 * 118.13219 * 24 6 5 38 38 H 1.09004 * 109.88163 * 239.29565 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0791 -0.7935 1.2149 5 6 3.4634 -1.2486 0.6893 6 7 3.2445 -1.5518 -0.7367 7 16 4.1633 -2.5766 -1.6576 8 8 5.4358 -2.6489 -1.0292 9 8 3.9852 -2.1714 -3.0079 10 6 3.4493 -4.1817 -1.5216 11 6 2.4721 -4.5785 -2.4214 12 6 1.9079 -5.8300 -2.3250 13 6 2.3269 -6.7083 -1.3086 14 6 1.7548 -7.9967 -1.2001 15 1 0.7639 -8.1819 -1.5876 16 6 2.4725 -9.0321 -0.5905 17 7 3.7803 -9.0003 -0.5747 18 14 1.5633 -10.4592 0.2004 19 1 2.5449 -11.4156 0.7725 20 1 0.7384 -11.1492 -0.8236 21 1 0.6837 -9.9474 1.2819 22 6 3.3159 -6.2930 -0.3977 23 6 3.8702 -5.0390 -0.5166 24 6 2.0793 -0.7889 -1.2075 25 1 -0.3632 0.4872 0.9049 26 1 -0.3633 0.5399 -0.8743 27 1 -0.3633 -1.0273 -0.0303 28 1 1.4453 -1.6513 1.4400 29 1 2.1852 -0.1486 2.0872 30 1 3.7961 -2.1407 1.2201 31 1 4.1946 -0.4479 0.7990 32 1 2.1521 -3.9027 -3.2006 33 1 1.1465 -6.1369 -3.0267 34 1 4.2544 -8.3042 -1.0558 35 1 3.6417 -6.9573 0.3890 36 1 4.6325 -4.7196 0.1786 37 1 2.3814 -0.1001 -1.9964 38 1 1.3155 -1.4713 -1.5806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:48 Heat of formation + Delta-G solvation = -76.840222 kcal Electronic energy + Delta-G solvation = -21821.910999 eV Core-core repulsion = 18561.886722 eV Total energy + Delta-G solvation = -3260.024278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.55431 -37.82570 -36.55998 -35.18337 -34.25512 -32.43251 -30.14085 -29.53637 -29.41900 -25.99880 -25.64164 -22.27296 -21.49383 -21.36097 -20.33148 -18.56107 -18.23056 -17.29830 -16.69762 -16.05651 -15.05646 -14.79788 -14.33275 -13.96046 -13.83628 -13.54127 -13.49315 -13.19688 -12.97458 -12.57185 -12.50894 -12.27931 -11.98287 -11.84647 -11.54847 -11.47072 -11.36001 -11.26233 -11.16481 -10.96366 -10.79118 -10.64823 -10.59688 -10.31225 -9.94033 -9.65103 -9.35323 -8.67513 -8.14173 -7.96584 -7.55671 -4.91353 1.11994 2.18722 2.72692 2.97124 3.02188 3.18679 3.62077 3.76110 4.19110 4.40566 4.47306 4.62402 4.79949 5.09232 5.17714 5.30538 5.36017 5.42941 5.55432 5.63837 5.71773 5.85146 5.92359 5.93893 5.94780 6.00989 6.06008 6.26575 6.39052 6.49804 6.53652 6.79582 6.85073 7.07510 7.26290 7.41440 7.43921 7.48073 7.82630 8.01127 8.39437 8.50876 9.64837 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020341 B = 0.004527 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.211427 B = 6183.575953 C = 6676.567621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.124 3.876 6 N -1.017 6.017 7 S 2.708 3.292 8 O -0.979 6.979 9 O -0.980 6.980 10 C -0.798 4.798 11 C 0.008 3.992 12 C -0.238 4.238 13 C 0.117 3.883 14 C -0.484 4.484 15 H 0.086 0.914 16 C 0.034 3.966 17 N -0.766 5.766 18 Si 1.069 2.931 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.271 1.271 22 C -0.235 4.235 23 C 0.006 3.994 24 C 0.126 3.874 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.306 0.694 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 11.073 4.147 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.099 0.901 4 C -0.166 4.166 5 C -0.002 4.002 6 N -0.853 5.853 7 S 2.809 3.191 8 O -0.970 6.970 9 O -0.971 6.971 10 C -0.894 4.894 11 C -0.012 4.012 12 C -0.259 4.259 13 C 0.113 3.887 14 C -0.510 4.510 15 H 0.104 0.896 16 C -0.192 4.192 17 N -0.387 5.387 18 Si 0.891 3.109 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.256 4.256 23 C -0.014 4.014 24 C 0.000 4.000 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.366 9.931 4.460 11.730 hybrid contribution -0.681 0.871 -0.716 1.317 sum -5.047 10.803 3.744 12.498 Atomic orbital electron populations 1.21770 0.94107 1.02431 1.01755 1.22209 0.96053 0.99198 0.94664 0.90066 1.22878 0.96232 1.00243 0.97256 1.21877 0.97111 1.00618 0.80577 1.58893 1.44926 1.60130 1.21362 1.00845 0.72795 0.73412 0.72081 1.93483 1.38410 1.87681 1.77418 1.93471 1.86686 1.83101 1.33880 1.29231 1.23642 1.21918 1.14595 1.20171 0.91728 0.95468 0.93853 1.20965 1.06950 0.96207 1.01736 1.17874 0.89454 0.92744 0.88578 1.20974 1.03825 0.94674 1.31556 0.89623 1.27338 0.95404 1.02432 0.94019 1.70453 1.08708 1.31964 1.27547 0.83569 0.75825 0.74224 0.77299 1.19399 1.19686 1.19591 1.21184 1.04891 0.97066 1.02419 1.20192 0.94378 0.93411 0.93452 1.21716 0.87426 0.94412 0.96434 0.92374 0.92434 0.92089 0.90331 0.90365 0.90739 0.91782 0.87765 0.88132 0.88012 0.87197 0.87747 0.91600 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.15 37.16 0.34 -0.93 16 2 C -0.10 -1.04 3.54 -88.78 -0.31 -1.36 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -1.35 6.54 -24.59 -0.16 -1.51 16 5 C 0.12 1.65 6.98 -2.53 -0.02 1.63 16 6 N -1.02 -16.23 3.70 -111.41 -0.41 -16.64 16 7 S 2.71 54.14 5.93 -107.50 -0.64 53.51 16 8 O -0.98 -21.50 16.84 -57.17 -0.96 -22.46 16 9 O -0.98 -21.35 16.84 -57.17 -0.96 -22.31 16 10 C -0.80 -17.79 6.00 -39.29 -0.24 -18.02 16 11 C 0.01 0.18 9.49 -39.66 -0.38 -0.20 16 12 C -0.24 -5.67 9.80 -38.87 -0.38 -6.05 16 13 C 0.12 2.97 5.30 -106.82 -0.57 2.40 16 14 C -0.48 -11.92 8.98 -37.74 -0.34 -12.26 16 15 H 0.09 2.01 7.96 -52.49 -0.42 1.59 16 16 C 0.03 0.79 4.93 -17.34 -0.09 0.70 16 17 N -0.77 -19.08 12.32 55.55 0.68 -18.40 16 18 Si 1.07 19.62 30.00 -169.99 -5.10 14.52 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 21 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 22 C -0.24 -5.82 7.96 -38.87 -0.31 -6.13 16 23 C 0.01 0.14 9.49 -39.66 -0.38 -0.24 16 24 C 0.13 1.69 6.60 -3.06 -0.02 1.67 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16 33 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 34 H 0.31 7.91 6.70 -40.82 -0.27 7.63 16 35 H 0.11 2.74 6.50 -52.49 -0.34 2.40 16 36 H 0.10 2.23 7.59 -52.49 -0.40 1.83 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -29.75 327.05 -10.56 -40.31 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.25 Total: 6.83 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: -2.84 Total: -40.28 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.27 Total: -35.04 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.93 Total: -44.77 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.10 Total: 14.52 kcal Atomic # 16 Polarization: 54.14 SS G_CDS: -0.64 Total: 53.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.75 -10.56 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.531 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds