Wall clock time and date at job start Tue Mar 31 2020 07:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.64269 * 2 1 4 4 C 1.55152 * 110.72452 * 123.15053 * 2 1 3 5 5 C 1.54908 * 101.58428 * 153.86550 * 4 2 1 6 6 N 1.47428 * 104.82954 * 322.98935 * 5 4 2 7 7 S 1.65603 * 125.64676 * 204.09337 * 6 5 4 8 8 O 1.42099 * 106.40467 * 336.48458 * 7 6 5 9 9 O 1.42097 * 106.40296 * 203.56167 * 7 6 5 10 10 C 1.76201 * 107.21719 * 90.02615 * 7 6 5 11 11 C 1.38635 * 119.75350 * 90.00136 * 10 7 6 12 12 C 1.37611 * 120.25212 * 179.97438 * 11 10 7 13 13 C 1.40717 * 119.74429 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24544 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 334.84990 * 14 13 12 16 16 C 1.39947 * 120.00447 * 154.85088 * 14 13 12 17 17 N 1.30829 * 119.99580 * 334.27844 * 16 14 13 18 18 Si 1.86794 * 120.00413 * 154.27772 * 16 14 13 19 19 H 1.48504 * 109.47556 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47307 * 60.00117 * 18 16 14 21 21 H 1.48499 * 109.47060 * 300.00218 * 18 16 14 22 22 C 1.40717 * 119.51251 * 0.27207 * 13 12 11 23 23 C 1.37622 * 119.74258 * 359.45159 * 22 13 12 24 24 C 1.47017 * 108.70356 * 24.35511 * 6 5 4 25 25 H 1.09000 * 109.46638 * 298.30097 * 1 2 3 26 26 H 1.08995 * 109.47171 * 58.30226 * 1 2 3 27 27 H 1.09004 * 109.46842 * 178.30969 * 1 2 3 28 28 H 1.09001 * 111.00241 * 35.78907 * 4 2 1 29 29 H 1.09002 * 111.00500 * 271.93799 * 4 2 1 30 30 H 1.08999 * 110.36718 * 204.15508 * 5 4 2 31 31 H 1.08995 * 110.46165 * 81.87258 * 5 4 2 32 32 H 1.07996 * 119.87152 * 359.95128 * 11 10 7 33 33 H 1.07999 * 120.13162 * 179.97438 * 12 11 10 34 34 H 0.96996 * 120.00212 * 354.29995 * 17 16 14 35 35 H 1.07998 * 120.12873 * 179.72603 * 22 13 12 36 36 H 1.07997 * 119.87625 * 180.27232 * 23 22 13 37 37 H 1.09001 * 109.87781 * 118.13219 * 24 6 5 38 38 H 1.09004 * 109.88163 * 239.29565 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0791 -0.7935 1.2149 5 6 3.4634 -1.2486 0.6893 6 7 3.2445 -1.5518 -0.7367 7 16 4.1633 -2.5766 -1.6576 8 8 5.4358 -2.6489 -1.0292 9 8 3.9852 -2.1714 -3.0079 10 6 3.4493 -4.1817 -1.5216 11 6 2.4721 -4.5785 -2.4214 12 6 1.9079 -5.8300 -2.3250 13 6 2.3269 -6.7083 -1.3086 14 6 1.7548 -7.9967 -1.2001 15 1 0.7639 -8.1819 -1.5876 16 6 2.4725 -9.0321 -0.5905 17 7 3.7803 -9.0003 -0.5747 18 14 1.5633 -10.4592 0.2004 19 1 2.5449 -11.4156 0.7725 20 1 0.7384 -11.1492 -0.8236 21 1 0.6837 -9.9474 1.2819 22 6 3.3159 -6.2930 -0.3977 23 6 3.8702 -5.0390 -0.5166 24 6 2.0793 -0.7889 -1.2075 25 1 -0.3632 0.4872 0.9049 26 1 -0.3633 0.5399 -0.8743 27 1 -0.3633 -1.0273 -0.0303 28 1 1.4453 -1.6513 1.4400 29 1 2.1852 -0.1486 2.0872 30 1 3.7961 -2.1407 1.2201 31 1 4.1946 -0.4479 0.7990 32 1 2.1521 -3.9027 -3.2006 33 1 1.1465 -6.1369 -3.0267 34 1 4.2544 -8.3042 -1.0558 35 1 3.6417 -6.9573 0.3890 36 1 4.6325 -4.7196 0.1786 37 1 2.3814 -0.1001 -1.9964 38 1 1.3155 -1.4713 -1.5806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:47 Heat of formation + Delta-G solvation = -94.758427 kcal Electronic energy + Delta-G solvation = -21822.687991 eV Core-core repulsion = 18561.886722 eV Total energy + Delta-G solvation = -3260.801269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.68289 -39.56452 -38.26502 -36.89624 -36.07286 -33.42139 -31.99762 -31.37122 -30.43569 -27.51211 -26.90186 -23.52477 -23.25073 -23.10527 -21.20881 -20.11553 -19.98607 -18.82921 -18.26888 -17.26481 -16.63090 -16.58938 -15.94121 -15.50432 -15.14091 -14.89480 -14.65676 -14.49765 -14.36354 -14.11128 -13.85097 -13.63999 -13.54893 -13.28046 -13.20554 -13.11424 -12.93010 -12.84081 -12.34339 -12.08656 -11.93305 -11.85965 -11.80144 -11.61383 -11.48254 -11.38935 -11.09789 -10.07037 -9.90822 -9.83481 -9.42414 -6.81853 -0.47395 0.35365 0.82679 1.47783 1.53546 1.77980 2.12309 2.23638 2.46130 2.84319 3.25586 3.29003 3.62480 3.80665 3.98467 4.11438 4.14131 4.35504 4.49108 4.56394 4.62029 4.63570 4.75267 4.83384 4.86669 4.95426 4.98763 5.10779 5.17023 5.19210 5.20925 5.29997 5.38199 5.45424 5.51822 5.53125 5.59799 5.62613 5.95585 6.13662 6.52317 6.64662 7.75454 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020341 B = 0.004527 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.211427 B = 6183.575953 C = 6676.567621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.103 0.897 4 C -0.120 4.120 5 C 0.109 3.891 6 N -1.015 6.015 7 S 2.736 3.264 8 O -0.999 6.999 9 O -0.998 6.998 10 C -0.805 4.805 11 C 0.004 3.996 12 C -0.254 4.254 13 C 0.093 3.907 14 C -0.512 4.512 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.788 5.788 18 Si 1.121 2.879 19 H -0.270 1.270 20 H -0.252 1.252 21 H -0.259 1.259 22 C -0.253 4.253 23 C 0.001 3.999 24 C 0.111 3.889 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.289 0.711 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.756 12.677 5.012 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.121 0.879 4 C -0.159 4.159 5 C -0.016 4.016 6 N -0.854 5.854 7 S 2.833 3.167 8 O -0.990 6.990 9 O -0.988 6.988 10 C -0.898 4.898 11 C -0.015 4.015 12 C -0.275 4.275 13 C 0.090 3.910 14 C -0.538 4.538 15 H 0.109 0.891 16 C -0.217 4.217 17 N -0.408 5.408 18 Si 0.936 3.064 19 H -0.194 1.194 20 H -0.176 1.176 21 H -0.183 1.183 22 C -0.273 4.273 23 C -0.019 4.019 24 C -0.013 4.013 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.639 11.517 5.305 13.878 hybrid contribution -0.260 0.593 -1.011 1.201 sum -5.899 12.110 4.294 14.138 Atomic orbital electron populations 1.21764 0.92966 1.01985 1.03134 1.22241 0.96857 0.99555 0.92561 0.87909 1.22895 0.94076 1.00519 0.98431 1.22237 0.99513 1.00994 0.78810 1.58545 1.45446 1.58899 1.22555 0.99957 0.72336 0.72641 0.71732 1.93451 1.39923 1.87862 1.77762 1.93442 1.86956 1.82985 1.35446 1.29762 1.22684 1.23783 1.13574 1.20457 0.91455 0.95390 0.94236 1.21204 1.07699 0.96691 1.01871 1.18211 0.89957 0.93702 0.89179 1.21217 1.04353 0.95058 1.33146 0.89063 1.28792 0.95220 1.04377 0.93292 1.70570 1.09588 1.31899 1.28778 0.82966 0.74966 0.71273 0.77213 1.19423 1.17567 1.18314 1.21195 1.05816 0.97652 1.02675 1.20402 0.94446 0.93048 0.94003 1.22065 0.86385 0.94528 0.98357 0.90566 0.91564 0.93435 0.91260 0.87226 0.91638 0.89988 0.85699 0.86972 0.89871 0.88267 0.86465 0.90986 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.15 71.98 0.66 -1.41 16 2 C -0.09 -1.59 3.54 -9.60 -0.03 -1.63 16 3 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 4 C -0.12 -2.18 6.54 31.98 0.21 -1.97 16 5 C 0.11 2.67 6.98 86.85 0.61 3.28 16 6 N -1.02 -30.83 3.70 -506.41 -1.87 -32.70 16 7 S 2.74 107.46 5.93 -56.49 -0.34 107.12 16 8 O -1.00 -43.32 16.84 -128.00 -2.16 -45.47 16 9 O -1.00 -42.51 16.84 -128.00 -2.16 -44.66 16 10 C -0.81 -36.00 6.00 22.46 0.13 -35.86 16 11 C 0.00 0.20 9.49 22.22 0.21 0.41 16 12 C -0.25 -12.29 9.80 22.73 0.22 -12.06 16 13 C 0.09 4.85 5.30 -21.29 -0.11 4.73 16 14 C -0.51 -25.74 8.98 23.46 0.21 -25.53 16 15 H 0.09 4.34 7.96 -2.91 -0.02 4.31 16 16 C 0.00 0.14 4.93 85.26 0.42 0.56 16 17 N -0.79 -40.45 12.32 21.83 0.27 -40.18 16 18 Si 1.12 39.09 30.00 68.60 2.06 41.14 16 19 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 20 H -0.25 -7.94 7.11 99.48 0.71 -7.23 16 21 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 22 C -0.25 -12.97 7.96 22.73 0.18 -12.79 16 23 C 0.00 0.05 9.49 22.22 0.21 0.26 16 24 C 0.11 2.76 6.60 86.73 0.57 3.34 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 28 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.13 5.02 7.60 -2.91 -0.02 5.00 16 33 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 34 H 0.29 15.65 6.70 -92.71 -0.62 15.03 16 35 H 0.10 5.19 6.50 -2.91 -0.02 5.17 16 36 H 0.12 5.10 7.59 -2.91 -0.02 5.08 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.55 7.79 -2.38 -0.02 1.53 16 Total: -1.00 -64.79 327.05 0.50 -64.30 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 1.20 Total: 29.14 kcal Atomic # 6 Polarization: -82.17 SS G_CDS: 3.49 Total: -78.68 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.60 Total: -72.89 kcal Atomic # 8 Polarization: -85.82 SS G_CDS: -4.31 Total: -90.14 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.06 Total: 41.14 kcal Atomic # 16 Polarization: 107.46 SS G_CDS: -0.34 Total: 107.12 kcal Total: -64.79 0.50 -64.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.463 kcal (2) G-P(sol) polarization free energy of solvation -64.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds