Wall clock time and date at job start Tue Mar 31 2020 07:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47206 * 2 1 4 4 N 1.46504 * 109.46803 * 179.97438 * 3 2 1 5 5 C 1.36885 * 119.99735 * 91.51701 * 4 3 2 6 6 H 1.07996 * 120.00408 * 220.70771 * 5 4 3 7 7 C 1.39009 * 120.00075 * 40.71241 * 5 4 3 8 8 N 1.31402 * 119.99838 * 7.06409 * 7 5 4 9 9 Si 1.86794 * 120.00071 * 187.07301 * 7 5 4 10 10 H 1.48502 * 109.47351 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47444 * 119.99721 * 9 7 5 12 12 H 1.48500 * 109.46954 * 239.99635 * 9 7 5 13 13 C 1.34773 * 119.99961 * 271.51704 * 4 3 2 14 14 O 1.21747 * 119.99536 * 186.05973 * 13 4 3 15 15 C 1.46456 * 120.00115 * 6.06532 * 13 4 3 16 16 C 1.36381 * 125.44315 * 187.29945 * 15 13 4 17 17 C 1.37949 * 114.00869 * 180.02562 * 16 15 13 18 18 C 1.35588 * 113.92562 * 359.97159 * 17 16 15 19 19 S 1.70355 * 111.20359 * 0.04830 * 18 17 16 20 20 C 1.51721 * 123.16327 * 179.97438 * 18 17 16 21 21 C 1.53357 * 107.99767 * 344.33225 * 20 18 17 22 22 O 1.43025 * 109.12014 * 47.87695 * 21 20 18 23 23 C 1.43002 * 114.15478 * 288.41668 * 22 21 20 24 24 H 1.08992 * 109.47734 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46902 * 300.00228 * 1 2 3 26 26 H 1.08997 * 109.47160 * 59.99274 * 1 2 3 27 27 H 1.09004 * 109.46902 * 239.99772 * 2 1 3 28 28 H 1.09004 * 109.46895 * 120.00454 * 2 1 3 29 29 H 1.08997 * 109.46874 * 60.00498 * 3 2 1 30 30 H 1.08996 * 109.47094 * 299.99666 * 3 2 1 31 31 H 0.97003 * 119.99782 * 180.02562 * 8 7 5 32 32 H 1.08005 * 122.99945 * 359.97438 * 16 15 13 33 33 H 1.09005 * 109.76836 * 224.69374 * 20 18 17 34 34 H 1.08999 * 109.76854 * 103.97475 * 20 18 17 35 35 H 1.09005 * 109.53079 * 167.77050 * 21 20 18 36 36 H 1.09005 * 109.53171 * 287.98521 * 21 20 18 37 37 H 1.09002 * 109.69114 * 171.74752 * 23 22 21 38 38 H 1.09000 * 109.68696 * 292.27825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1899 1.4736 -1.1842 6 1 5.0739 0.8667 -1.3131 7 6 3.7476 2.2864 -2.2215 8 7 2.7577 3.1270 -2.0212 9 14 4.5604 2.1835 -3.9002 10 1 5.6422 1.1669 -3.8650 11 1 3.5494 1.7962 -4.9168 12 1 5.1359 3.5061 -4.2534 13 6 4.1784 1.4116 1.1677 14 8 5.3908 1.5227 1.1740 15 6 3.4518 1.2444 2.4282 16 6 3.9980 1.3378 3.6744 17 6 3.0962 1.1377 4.6989 18 6 1.8323 0.8855 4.2776 19 16 1.7373 0.8906 2.5767 20 6 0.6758 0.6338 5.2268 21 6 1.2578 0.3291 6.6126 22 8 2.2468 1.3118 6.9317 23 6 3.4562 1.1910 6.1783 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.4489 3.6939 -2.7451 32 1 5.0435 1.5489 3.8440 33 1 0.0907 -0.2171 4.8776 34 1 0.0427 1.5194 5.2795 35 1 0.4617 0.3583 7.3566 36 1 1.7158 -0.6600 6.6061 37 1 4.0959 2.0525 6.3699 38 1 3.9766 0.2767 6.4634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103073232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:30 Heat of formation + Delta-G solvation = -45.530018 kcal Electronic energy + Delta-G solvation = -22030.616740 eV Core-core repulsion = 18771.950174 eV Total energy + Delta-G solvation = -3258.666565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47936 -38.66101 -36.25805 -35.15401 -33.02540 -32.23428 -31.32860 -29.41645 -26.32648 -25.51950 -25.21627 -23.70950 -21.98573 -21.05804 -19.71720 -17.73828 -17.65662 -16.90382 -16.41447 -15.92704 -15.08795 -15.02547 -14.90268 -14.40822 -14.08791 -13.87967 -13.60896 -13.29882 -12.89862 -12.75824 -12.50127 -12.27760 -11.79822 -11.69662 -11.42903 -11.36594 -11.18416 -11.08658 -10.89002 -10.79347 -10.41523 -10.37765 -10.22900 -10.12699 -9.50715 -9.07435 -8.66804 -8.09538 -7.70892 -7.55174 -6.38453 -4.14506 1.09012 2.05480 2.49644 2.78338 3.13221 3.21034 3.26810 3.83785 4.02995 4.25086 4.65662 4.76223 4.92309 4.97899 5.09644 5.20440 5.40023 5.44576 5.50230 5.56598 5.61387 5.64133 5.72361 5.81587 5.93721 6.05002 6.08477 6.29726 6.36017 6.42222 6.52945 6.63914 6.82566 6.85015 7.12662 7.22806 7.50134 8.16106 8.40160 9.04515 9.22317 9.84984 10.60355 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.004895 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.773042 B = 5718.578256 C = 6477.746553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C 0.078 3.922 4 N -0.430 5.430 5 C -0.295 4.295 6 H 0.093 0.907 7 C 0.035 3.965 8 N -0.874 5.874 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.521 3.479 14 O -0.570 6.570 15 C -0.228 4.228 16 C -0.083 4.083 17 C -0.158 4.158 18 C -0.271 4.271 19 S 0.258 5.742 20 C -0.076 4.076 21 C 0.066 3.934 22 O -0.380 6.380 23 C 0.127 3.873 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.271 0.729 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -5.812 10.395 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C -0.048 4.048 4 N -0.147 5.147 5 C -0.424 4.424 6 H 0.111 0.889 7 C -0.168 4.168 8 N -0.513 5.513 9 Si 0.755 3.245 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.309 3.691 14 O -0.454 6.454 15 C -0.349 4.349 16 C -0.115 4.115 17 C -0.172 4.172 18 C -0.389 4.389 19 S 0.530 5.470 20 C -0.115 4.115 21 C -0.012 4.012 22 O -0.299 6.299 23 C 0.049 3.951 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.831 -5.693 9.362 14.073 hybrid contribution 1.448 0.140 0.055 1.456 sum -7.383 -5.553 9.417 13.192 Atomic orbital electron populations 1.21699 0.95758 1.01024 1.01688 1.22153 0.95601 0.99088 1.01980 1.22240 0.82514 0.95287 1.04727 1.43361 1.04597 1.62472 1.04292 1.19545 1.11061 1.23499 0.88248 0.88904 1.25542 0.96649 0.93901 1.00735 1.69613 1.26533 1.21793 1.33328 0.85823 0.79230 0.78553 0.80919 1.19066 1.20510 1.20474 1.17175 0.87215 0.82773 0.81943 1.90662 1.13356 1.55233 1.86168 1.24949 0.97341 1.13685 0.98895 1.20184 1.00568 1.01058 0.89723 1.19919 0.92942 1.07421 0.96912 1.25338 0.98693 1.10566 1.04324 1.84043 1.05969 1.63619 0.93385 1.20868 0.94570 1.02431 0.93623 1.22574 0.91498 0.91661 0.95490 1.87925 1.25887 1.54328 1.61740 1.21477 0.86193 1.01994 0.85430 0.93041 0.93043 0.92350 0.90976 0.92358 0.92689 0.84376 0.91850 0.83918 0.89984 0.89903 0.88581 0.92845 0.87880 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.73 37.16 0.36 -1.67 16 2 C -0.15 -2.67 5.22 -26.73 -0.14 -2.81 16 3 C 0.08 1.69 4.47 -4.04 -0.02 1.68 16 4 N -0.43 -11.03 2.52 -116.37 -0.29 -11.33 16 5 C -0.30 -8.06 8.88 -15.01 -0.13 -8.19 16 6 H 0.09 2.62 7.81 -52.49 -0.41 2.21 16 7 C 0.04 0.92 5.25 -17.45 -0.09 0.83 16 8 N -0.87 -22.85 10.87 55.50 0.60 -22.25 16 9 Si 0.93 20.23 29.56 -169.99 -5.02 15.21 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.52 13.49 7.57 -12.95 -0.10 13.39 16 14 O -0.57 -16.59 16.80 5.15 0.09 -16.51 16 15 C -0.23 -4.86 6.17 -36.94 -0.23 -5.09 16 16 C -0.08 -1.60 9.85 -40.36 -0.40 -1.99 16 17 C -0.16 -2.60 5.84 -104.86 -0.61 -3.21 16 18 C -0.27 -4.22 6.23 -34.75 -0.22 -4.44 16 19 S 0.26 4.36 14.05 -107.50 -1.51 2.85 16 20 C -0.08 -0.90 6.52 -27.19 -0.18 -1.08 16 21 C 0.07 0.72 6.81 37.34 0.25 0.97 16 22 O -0.38 -5.18 10.72 -35.23 -0.38 -5.55 16 23 C 0.13 1.71 7.12 36.82 0.26 1.97 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.67 7.19 -51.93 -0.37 0.30 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.06 1.03 5.78 -36.48 -0.21 0.82 16 29 H 0.06 1.15 4.72 -24.44 -0.12 1.04 16 30 H 0.14 3.28 5.20 -51.93 -0.27 3.01 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.14 2.68 8.06 -52.48 -0.42 2.26 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -31.31 315.77 -7.73 -39.04 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.74 Total: 3.43 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.23 Total: -9.65 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.31 Total: -33.58 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.29 Total: -22.06 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.51 Total: 2.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.31 -7.73 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103073232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.495 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds