Wall clock time and date at job start Tue Mar 31 2020 07:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47206 * 2 1 4 4 N 1.46504 * 109.46803 * 179.97438 * 3 2 1 5 5 C 1.36885 * 119.99735 * 91.51701 * 4 3 2 6 6 H 1.07996 * 120.00408 * 220.70771 * 5 4 3 7 7 C 1.39009 * 120.00075 * 40.71241 * 5 4 3 8 8 N 1.31402 * 119.99838 * 7.06409 * 7 5 4 9 9 Si 1.86794 * 120.00071 * 187.07301 * 7 5 4 10 10 H 1.48502 * 109.47351 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47444 * 119.99721 * 9 7 5 12 12 H 1.48500 * 109.46954 * 239.99635 * 9 7 5 13 13 C 1.34773 * 119.99961 * 271.51704 * 4 3 2 14 14 O 1.21747 * 119.99536 * 186.05973 * 13 4 3 15 15 C 1.46456 * 120.00115 * 6.06532 * 13 4 3 16 16 C 1.36381 * 125.44315 * 187.29945 * 15 13 4 17 17 C 1.37949 * 114.00869 * 180.02562 * 16 15 13 18 18 C 1.35588 * 113.92562 * 359.97159 * 17 16 15 19 19 S 1.70355 * 111.20359 * 0.04830 * 18 17 16 20 20 C 1.51721 * 123.16327 * 179.97438 * 18 17 16 21 21 C 1.53357 * 107.99767 * 344.33225 * 20 18 17 22 22 O 1.43025 * 109.12014 * 47.87695 * 21 20 18 23 23 C 1.43002 * 114.15478 * 288.41668 * 22 21 20 24 24 H 1.08992 * 109.47734 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46902 * 300.00228 * 1 2 3 26 26 H 1.08997 * 109.47160 * 59.99274 * 1 2 3 27 27 H 1.09004 * 109.46902 * 239.99772 * 2 1 3 28 28 H 1.09004 * 109.46895 * 120.00454 * 2 1 3 29 29 H 1.08997 * 109.46874 * 60.00498 * 3 2 1 30 30 H 1.08996 * 109.47094 * 299.99666 * 3 2 1 31 31 H 0.97003 * 119.99782 * 180.02562 * 8 7 5 32 32 H 1.08005 * 122.99945 * 359.97438 * 16 15 13 33 33 H 1.09005 * 109.76836 * 224.69374 * 20 18 17 34 34 H 1.08999 * 109.76854 * 103.97475 * 20 18 17 35 35 H 1.09005 * 109.53079 * 167.77050 * 21 20 18 36 36 H 1.09005 * 109.53171 * 287.98521 * 21 20 18 37 37 H 1.09002 * 109.69114 * 171.74752 * 23 22 21 38 38 H 1.09000 * 109.68696 * 292.27825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1899 1.4736 -1.1842 6 1 5.0739 0.8667 -1.3131 7 6 3.7476 2.2864 -2.2215 8 7 2.7577 3.1270 -2.0212 9 14 4.5604 2.1835 -3.9002 10 1 5.6422 1.1669 -3.8650 11 1 3.5494 1.7962 -4.9168 12 1 5.1359 3.5061 -4.2534 13 6 4.1784 1.4116 1.1677 14 8 5.3908 1.5227 1.1740 15 6 3.4518 1.2444 2.4282 16 6 3.9980 1.3378 3.6744 17 6 3.0962 1.1377 4.6989 18 6 1.8323 0.8855 4.2776 19 16 1.7373 0.8906 2.5767 20 6 0.6758 0.6338 5.2268 21 6 1.2578 0.3291 6.6126 22 8 2.2468 1.3118 6.9317 23 6 3.4562 1.1910 6.1783 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.4489 3.6939 -2.7451 32 1 5.0435 1.5489 3.8440 33 1 0.0907 -0.2171 4.8776 34 1 0.0427 1.5194 5.2795 35 1 0.4617 0.3583 7.3566 36 1 1.7158 -0.6600 6.6061 37 1 4.0959 2.0525 6.3699 38 1 3.9766 0.2767 6.4634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103073232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:29 Heat of formation + Delta-G solvation = -65.399888 kcal Electronic energy + Delta-G solvation = -22031.478362 eV Core-core repulsion = 18771.950174 eV Total energy + Delta-G solvation = -3259.528188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78937 -40.34769 -37.69011 -36.88215 -34.75337 -33.31107 -33.13364 -30.76079 -28.00999 -26.81533 -26.65208 -25.16625 -23.29128 -22.54313 -21.26350 -19.31936 -19.13146 -18.73776 -17.53623 -17.34433 -16.79466 -16.39218 -16.19441 -15.87998 -15.65450 -15.58684 -15.03238 -14.62568 -14.21130 -14.12650 -13.76677 -13.63861 -13.40523 -13.24275 -13.07065 -12.80938 -12.65205 -12.44634 -12.35931 -12.12239 -12.09026 -11.88020 -11.64981 -11.45492 -11.06593 -10.68591 -10.51843 -9.67583 -9.38796 -9.08188 -8.35143 -6.22485 -0.37549 0.60515 1.11591 1.29982 1.39045 1.44291 1.53258 2.21631 2.35769 2.88394 2.94903 3.01730 3.69358 3.77895 3.96282 4.04586 4.13465 4.25372 4.33845 4.38137 4.47417 4.49181 4.62909 4.64022 4.73930 4.80799 4.91218 4.98908 5.02637 5.10763 5.25493 5.28311 5.31558 5.43264 5.47885 5.58396 6.15285 6.17445 6.44423 7.04029 7.26744 7.88105 8.61877 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.004895 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.773042 B = 5718.578256 C = 6477.746553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.078 3.922 4 N -0.442 5.442 5 C -0.334 4.334 6 H 0.067 0.933 7 C 0.004 3.996 8 N -0.892 5.892 9 Si 0.992 3.008 10 H -0.272 1.272 11 H -0.259 1.259 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.625 6.625 15 C -0.289 4.289 16 C -0.072 4.072 17 C -0.175 4.175 18 C -0.251 4.251 19 S 0.300 5.700 20 C -0.079 4.079 21 C 0.060 3.940 22 O -0.393 6.393 23 C 0.131 3.869 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.278 0.722 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.000 -6.688 11.916 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C -0.046 4.046 4 N -0.158 5.158 5 C -0.463 4.463 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.530 5.530 9 Si 0.815 3.185 10 H -0.196 1.196 11 H -0.183 1.183 12 H -0.202 1.202 13 C 0.297 3.703 14 O -0.514 6.514 15 C -0.409 4.409 16 C -0.106 4.106 17 C -0.188 4.188 18 C -0.370 4.370 19 S 0.573 5.427 20 C -0.118 4.118 21 C -0.018 4.018 22 O -0.311 6.311 23 C 0.052 3.948 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.146 0.854 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.766 -6.573 10.874 17.317 hybrid contribution 2.270 0.414 -0.259 2.322 sum -9.497 -6.159 10.614 15.517 Atomic orbital electron populations 1.21677 0.92270 1.03111 1.02393 1.22076 0.98459 0.96118 1.01363 1.22339 0.80323 0.97755 1.04197 1.43602 1.06135 1.62226 1.03864 1.19513 1.11625 1.25109 0.90017 0.91493 1.26285 0.96904 0.92974 1.03685 1.69707 1.26908 1.21792 1.34568 0.84900 0.78525 0.78252 0.76829 1.19611 1.18296 1.20238 1.17834 0.87056 0.81841 0.83559 1.90581 1.15702 1.57699 1.87402 1.24582 1.00523 1.18478 0.97348 1.20375 1.00831 0.99354 0.90039 1.20152 0.92729 1.07845 0.98053 1.25939 0.99862 1.07082 1.04151 1.83551 1.02026 1.62683 0.94487 1.21158 0.93297 1.04208 0.93133 1.22865 0.91786 0.91486 0.95629 1.87925 1.26218 1.55453 1.61544 1.21543 0.86723 1.03301 0.83204 0.90241 0.91572 0.92421 0.92612 0.92054 0.91900 0.86323 0.91169 0.84853 0.87078 0.88661 0.85363 0.91914 0.87202 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.73 71.98 0.70 -2.84 16 2 C -0.14 -5.02 5.22 30.59 0.16 -4.86 16 3 C 0.08 3.49 4.47 86.38 0.39 3.87 16 4 N -0.44 -23.92 2.52 -640.28 -1.61 -25.54 16 5 C -0.33 -19.35 8.88 84.09 0.75 -18.61 16 6 H 0.07 4.10 7.81 -2.91 -0.02 4.07 16 7 C 0.00 0.19 5.25 84.94 0.45 0.64 16 8 N -0.89 -47.59 10.87 21.68 0.24 -47.36 16 9 Si 0.99 42.38 29.56 68.60 2.03 44.41 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 13 C 0.51 27.93 7.57 86.38 0.65 28.59 16 14 O -0.62 -39.27 16.80 -4.50 -0.08 -39.35 16 15 C -0.29 -12.72 6.17 23.98 0.15 -12.57 16 16 C -0.07 -2.82 9.85 21.77 0.21 -2.61 16 17 C -0.18 -5.48 5.84 -20.02 -0.12 -5.60 16 18 C -0.25 -7.11 6.23 25.40 0.16 -6.95 16 19 S 0.30 9.72 14.05 -56.49 -0.79 8.92 16 20 C -0.08 -1.49 6.52 30.29 0.20 -1.30 16 21 C 0.06 1.02 6.81 72.10 0.49 1.51 16 22 O -0.39 -9.26 10.72 -148.98 -1.60 -10.86 16 23 C 0.13 3.19 7.12 71.77 0.51 3.70 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.51 7.19 -2.38 -0.02 1.49 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.06 2.14 5.78 -12.21 -0.07 2.07 16 29 H 0.06 2.66 4.72 -19.87 -0.09 2.56 16 30 H 0.12 5.79 5.20 -2.39 -0.01 5.78 16 31 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.13 5.29 8.06 -2.91 -0.02 5.27 16 33 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 0.98 8.08 -2.38 -0.02 0.96 16 37 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.96 315.77 3.81 -69.15 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.94 Total: 17.65 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.70 Total: -17.03 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.38 Total: -72.89 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.67 Total: -50.21 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 9.72 SS G_CDS: -0.79 Total: 8.92 kcal Total: -72.96 3.81 -69.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103073232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.749 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds