Wall clock time and date at job start Tue Mar 31 2020 07:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47507 * 2 1 4 4 C 1.50702 * 109.47086 * 120.00342 * 2 1 3 5 5 H 1.08003 * 120.00230 * 119.99642 * 4 2 1 6 6 C 1.37870 * 119.99879 * 299.99584 * 4 2 1 7 7 N 1.31516 * 120.00333 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00231 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46927 * 59.99536 * 8 6 4 10 10 H 1.48490 * 109.47268 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46650 * 300.00248 * 8 6 4 12 12 N 1.46502 * 109.46736 * 240.00084 * 2 1 3 13 13 C 1.46506 * 120.00034 * 299.99959 * 12 2 1 14 14 C 1.34779 * 119.99952 * 120.00381 * 12 2 1 15 15 O 1.21549 * 119.99744 * 6.98672 * 14 12 2 16 16 C 1.47849 * 119.99641 * 186.98689 * 14 12 2 17 17 C 1.39570 * 120.14580 * 20.29387 * 16 14 12 18 18 C 1.37962 * 119.85361 * 179.74326 * 17 16 14 19 19 C 1.38356 * 120.14023 * 0.52964 * 18 17 16 20 20 S 1.76202 * 119.85473 * 179.76266 * 19 18 17 21 21 C 1.81397 * 103.00231 * 269.98084 * 20 19 18 22 22 O 1.42100 * 103.00442 * 156.12630 * 20 19 18 23 23 C 1.38364 * 120.29510 * 359.74551 * 19 18 17 24 24 C 1.37954 * 120.14303 * 359.97438 * 23 19 18 25 25 H 1.08990 * 109.47507 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46648 * 300.00025 * 1 2 3 27 27 H 1.08997 * 109.46604 * 59.99713 * 1 2 3 28 28 H 0.97002 * 120.00408 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46895 * 85.95542 * 13 12 2 30 30 H 1.08994 * 109.46801 * 325.95721 * 13 12 2 31 31 H 1.09000 * 109.47068 * 205.95421 * 13 12 2 32 32 H 1.07998 * 120.07796 * 359.97438 * 17 16 14 33 33 H 1.07994 * 119.93138 * 180.27535 * 18 17 16 34 34 H 1.08998 * 109.47435 * 59.99462 * 21 20 19 35 35 H 1.09004 * 109.47344 * 179.97438 * 21 20 19 36 36 H 1.08996 * 109.47129 * 300.00020 * 21 20 19 37 37 H 1.08004 * 119.92388 * 180.02562 * 23 19 18 38 38 H 1.08003 * 120.07146 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.8076 -1.1192 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1919 1.0846 -1.8313 16 6 3.1582 -0.6798 -3.3631 17 6 2.3991 -1.7432 -3.8541 18 6 2.7420 -2.3365 -5.0516 19 6 3.8421 -1.8866 -5.7598 20 16 4.2769 -2.6539 -7.2853 21 6 5.4061 -3.9766 -6.7695 22 8 5.0114 -1.6389 -7.9558 23 6 4.6022 -0.8366 -5.2758 24 6 4.2667 -0.2309 -4.0826 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 0.7091 1.1614 3.4845 29 1 0.7015 -2.1457 -1.9363 30 1 1.5998 -2.6143 -0.4729 31 1 2.4282 -2.5631 -2.0475 32 1 1.5430 -2.0985 -3.2998 33 1 2.1530 -3.1564 -5.4348 34 1 4.8863 -4.6547 -6.0927 35 1 5.7445 -4.5281 -7.6467 36 1 6.2656 -3.5421 -6.2592 37 1 5.4595 -0.4900 -5.8338 38 1 4.8606 0.5889 -3.7061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:40 Heat of formation + Delta-G solvation = -20.624407 kcal Electronic energy + Delta-G solvation = -21285.293833 eV Core-core repulsion = 18027.707256 eV Total energy + Delta-G solvation = -3257.586577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07027 -37.99279 -35.94609 -35.54450 -33.20732 -31.38634 -31.06182 -29.20648 -28.93281 -26.61074 -25.28673 -23.97065 -22.67218 -21.09067 -19.03569 -18.19896 -16.98836 -16.68872 -16.31006 -15.74368 -15.18304 -14.99963 -14.71425 -14.43464 -14.30096 -13.93148 -13.50471 -13.47730 -13.05557 -12.72145 -12.59186 -12.41985 -12.37038 -12.03151 -11.66836 -11.60470 -11.11685 -10.94373 -10.83409 -10.69294 -10.42187 -10.32897 -10.20158 -9.34773 -9.22283 -9.07009 -8.95125 -8.61185 -8.47703 -7.70145 -6.11807 -4.20279 0.55674 1.32048 1.62707 2.42547 3.14635 3.24907 3.30482 3.32035 3.64585 3.76982 3.99993 4.35599 4.72386 4.86292 4.88965 4.94937 4.98913 5.19663 5.28310 5.40475 5.58061 5.68216 5.70135 5.80860 5.92397 6.09049 6.15895 6.28149 6.36593 6.68751 6.75278 6.81358 6.98252 7.32472 7.45575 7.65173 7.94768 8.12908 8.40169 8.75136 8.92109 9.46109 10.93596 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031761 B = 0.003328 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.377414 B = 8410.827770 C = 8580.288563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.582 5.582 13 C 0.069 3.931 14 C 0.537 3.463 15 O -0.542 6.542 16 C -0.081 4.081 17 C -0.129 4.129 18 C -0.057 4.057 19 C -0.451 4.451 20 S 1.332 4.668 21 C -0.498 4.498 22 O -0.859 6.859 23 C -0.064 4.064 24 C -0.082 4.082 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.012 0.988 28 H 0.265 0.735 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.160 0.840 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -13.288 -17.606 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.075 4.075 14 C 0.324 3.676 15 O -0.421 6.421 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.076 4.076 19 C -0.548 4.548 20 S 1.529 4.471 21 C -0.655 4.655 22 O -0.855 6.855 23 C -0.083 4.083 24 C -0.102 4.102 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.370 -12.332 -18.192 21.981 hybrid contribution 2.101 0.308 2.240 3.086 sum 2.471 -12.024 -15.953 20.129 Atomic orbital electron populations 1.22094 0.97899 0.99539 1.00964 1.19002 0.90929 0.94531 0.79766 0.91831 1.21252 1.32046 1.13122 0.90252 0.92245 1.24888 0.94874 0.94956 0.98981 1.69863 1.36203 1.22491 1.23975 0.86535 0.79270 0.79546 0.81922 1.20239 1.21115 1.20183 1.48168 1.48215 1.11434 1.23430 1.22230 0.98688 0.83688 1.02862 1.18303 0.79734 0.86080 0.83469 1.90743 1.53950 1.19729 1.77712 1.20515 0.96087 0.96042 0.95815 1.22527 1.00961 0.95031 0.96247 1.20801 0.94786 0.98685 0.93335 1.27719 1.03393 1.06905 1.16814 1.69405 1.05438 0.90359 0.81916 1.27764 1.13577 1.14955 1.09191 1.93108 1.73942 1.54306 1.64105 1.21032 0.98497 0.94164 0.94654 1.21379 0.95931 0.98983 0.93939 0.95011 0.88664 0.96931 0.92541 0.92988 0.90075 0.91220 0.82336 0.84243 0.86961 0.87741 0.89956 0.85355 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.51 2.63 -69.08 -0.18 6.33 16 3 H 0.06 1.88 6.92 -51.93 -0.36 1.52 16 4 C -0.53 -14.12 8.02 -34.44 -0.28 -14.39 16 5 H 0.06 1.56 7.27 -52.48 -0.38 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.58 -12.29 2.75 -176.37 -0.49 -12.78 16 13 C 0.07 1.08 7.68 59.85 0.46 1.54 16 14 C 0.54 11.52 7.52 -12.33 -0.09 11.42 16 15 O -0.54 -13.86 15.88 5.32 0.08 -13.77 16 16 C -0.08 -1.36 5.57 -104.97 -0.58 -1.94 16 17 C -0.13 -1.61 7.61 -39.19 -0.30 -1.91 16 18 C -0.06 -0.53 9.73 -39.64 -0.39 -0.91 16 19 C -0.45 -4.83 5.62 -39.49 -0.22 -5.05 16 20 S 1.33 9.80 14.18 -107.50 -1.52 8.28 16 21 C -0.50 -3.16 10.70 101.05 1.08 -2.07 16 22 O -0.86 -12.20 16.88 -35.23 -0.59 -12.79 16 23 C -0.06 -0.90 9.43 -39.64 -0.37 -1.27 16 24 C -0.08 -1.32 9.59 -39.19 -0.38 -1.70 16 25 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.05 0.68 7.03 -51.93 -0.36 0.32 16 30 H 0.08 1.36 6.97 -51.93 -0.36 1.00 16 31 H 0.07 0.92 5.22 -51.93 -0.27 0.65 16 32 H 0.16 1.74 4.04 -52.49 -0.21 1.53 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.11 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.13 1.81 7.44 -52.48 -0.39 1.42 16 38 H 0.13 2.24 7.79 -52.48 -0.41 1.83 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -37.29 325.60 -7.73 -45.02 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.71 Total: 0.97 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.01 Total: -11.37 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.14 Total: -37.04 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.51 Total: -26.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 9.80 SS G_CDS: -1.52 Total: 8.28 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.29 -7.73 -45.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.391 kcal (2) G-P(sol) polarization free energy of solvation -37.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds