Wall clock time and date at job start Tue Mar 31 2020 07:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47507 * 2 1 4 4 C 1.50702 * 109.47086 * 120.00342 * 2 1 3 5 5 H 1.08003 * 120.00230 * 119.99642 * 4 2 1 6 6 C 1.37870 * 119.99879 * 299.99584 * 4 2 1 7 7 N 1.31516 * 120.00333 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00231 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46927 * 59.99536 * 8 6 4 10 10 H 1.48490 * 109.47268 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46650 * 300.00248 * 8 6 4 12 12 N 1.46502 * 109.46736 * 240.00084 * 2 1 3 13 13 C 1.46506 * 120.00034 * 299.99959 * 12 2 1 14 14 C 1.34779 * 119.99952 * 120.00381 * 12 2 1 15 15 O 1.21549 * 119.99744 * 6.98672 * 14 12 2 16 16 C 1.47849 * 119.99641 * 186.98689 * 14 12 2 17 17 C 1.39570 * 120.14580 * 20.29387 * 16 14 12 18 18 C 1.37962 * 119.85361 * 179.74326 * 17 16 14 19 19 C 1.38356 * 120.14023 * 0.52964 * 18 17 16 20 20 S 1.76202 * 119.85473 * 179.76266 * 19 18 17 21 21 C 1.81397 * 103.00231 * 269.98084 * 20 19 18 22 22 O 1.42100 * 103.00442 * 156.12630 * 20 19 18 23 23 C 1.38364 * 120.29510 * 359.74551 * 19 18 17 24 24 C 1.37954 * 120.14303 * 359.97438 * 23 19 18 25 25 H 1.08990 * 109.47507 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46648 * 300.00025 * 1 2 3 27 27 H 1.08997 * 109.46604 * 59.99713 * 1 2 3 28 28 H 0.97002 * 120.00408 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46895 * 85.95542 * 13 12 2 30 30 H 1.08994 * 109.46801 * 325.95721 * 13 12 2 31 31 H 1.09000 * 109.47068 * 205.95421 * 13 12 2 32 32 H 1.07998 * 120.07796 * 359.97438 * 17 16 14 33 33 H 1.07994 * 119.93138 * 180.27535 * 18 17 16 34 34 H 1.08998 * 109.47435 * 59.99462 * 21 20 19 35 35 H 1.09004 * 109.47344 * 179.97438 * 21 20 19 36 36 H 1.08996 * 109.47129 * 300.00020 * 21 20 19 37 37 H 1.08004 * 119.92388 * 180.02562 * 23 19 18 38 38 H 1.08003 * 120.07146 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.8076 -1.1192 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1919 1.0846 -1.8313 16 6 3.1582 -0.6798 -3.3631 17 6 2.3991 -1.7432 -3.8541 18 6 2.7420 -2.3365 -5.0516 19 6 3.8421 -1.8866 -5.7598 20 16 4.2769 -2.6539 -7.2853 21 6 5.4061 -3.9766 -6.7695 22 8 5.0114 -1.6389 -7.9558 23 6 4.6022 -0.8366 -5.2758 24 6 4.2667 -0.2309 -4.0826 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 0.7091 1.1614 3.4845 29 1 0.7015 -2.1457 -1.9363 30 1 1.5998 -2.6143 -0.4729 31 1 2.4282 -2.5631 -2.0475 32 1 1.5430 -2.0985 -3.2998 33 1 2.1530 -3.1564 -5.4348 34 1 4.8863 -4.6547 -6.0927 35 1 5.7445 -4.5281 -7.6467 36 1 6.2656 -3.5421 -6.2592 37 1 5.4595 -0.4900 -5.8338 38 1 4.8606 0.5889 -3.7061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:40 Heat of formation + Delta-G solvation = -48.389787 kcal Electronic energy + Delta-G solvation = -21286.497830 eV Core-core repulsion = 18027.707256 eV Total energy + Delta-G solvation = -3258.790574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46333 -39.31037 -37.32194 -36.88415 -35.04240 -32.81839 -32.11231 -30.75937 -29.56057 -28.01465 -27.33337 -25.29470 -23.72684 -22.68097 -20.58517 -19.07805 -18.62056 -18.12622 -17.69079 -17.17146 -16.58255 -16.27997 -15.78091 -15.74695 -15.60163 -15.01302 -14.72337 -14.44205 -14.40323 -14.00113 -13.94460 -13.68488 -13.55738 -13.30296 -12.99082 -12.85833 -12.77670 -12.71448 -12.68725 -12.22765 -12.14841 -11.83687 -11.39784 -11.24391 -10.82190 -10.54433 -10.27266 -9.98352 -9.43872 -9.34566 -8.17329 -6.34481 -0.49048 0.30678 0.91983 1.39982 1.42924 1.50177 1.63215 1.92497 2.19841 2.43625 2.68961 3.00456 3.10944 3.55697 3.76283 3.94237 4.23631 4.36646 4.39704 4.45136 4.59827 4.60776 4.65164 4.73522 4.88472 4.94246 5.00283 5.03294 5.09713 5.16383 5.24862 5.28724 5.45342 5.56356 5.63148 5.83054 6.00395 6.12589 6.69309 6.72513 7.20440 7.39296 8.87060 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031761 B = 0.003328 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.377414 B = 8410.827770 C = 8580.288563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.003 0.997 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.257 1.257 12 N -0.587 5.587 13 C 0.060 3.940 14 C 0.526 3.474 15 O -0.607 6.607 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.029 4.029 19 C -0.448 4.448 20 S 1.415 4.585 21 C -0.498 4.498 22 O -0.927 6.927 23 C -0.081 4.081 24 C -0.105 4.105 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.265 0.735 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.213 0.787 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 -18.201 -19.382 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.021 0.979 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.207 1.207 10 H -0.209 1.209 11 H -0.181 1.181 12 N -0.316 5.316 13 C -0.081 4.081 14 C 0.316 3.684 15 O -0.490 6.490 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.048 4.048 19 C -0.543 4.543 20 S 1.612 4.388 21 C -0.656 4.656 22 O -0.923 6.923 23 C -0.100 4.100 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.199 0.801 33 H 0.230 0.770 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.950 -17.273 -19.975 26.425 hybrid contribution 2.564 1.738 2.655 4.080 sum 1.614 -15.534 -17.320 23.322 Atomic orbital electron populations 1.21861 0.96257 1.00692 1.00110 1.18612 0.92094 0.91970 0.81504 0.97904 1.21528 1.32127 1.13219 0.91105 0.92028 1.25747 0.94992 0.95619 1.02067 1.70016 1.37215 1.23799 1.24591 0.85495 0.78170 0.79253 0.78014 1.20700 1.20877 1.18121 1.48145 1.47912 1.13493 1.22002 1.22631 1.01619 0.80255 1.03551 1.19137 0.78728 0.85542 0.84986 1.90690 1.56340 1.22662 1.79348 1.20168 0.98091 0.98738 0.94180 1.22830 1.00471 0.93161 0.97525 1.21584 0.93505 0.98742 0.90935 1.28365 1.02909 1.05290 1.17725 1.68590 1.04160 0.87767 0.78250 1.27776 1.12568 1.14628 1.10673 1.92990 1.75923 1.57189 1.66236 1.21001 0.99244 0.95810 0.93948 1.21216 0.96577 0.99363 0.95410 0.92601 0.91352 0.95924 0.92555 0.89208 0.91009 0.88104 0.80107 0.76992 0.83517 0.85772 0.92300 0.86589 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.97 71.98 0.65 -5.52 16 2 C 0.26 13.68 2.63 44.25 0.12 13.80 16 3 H 0.00 0.19 6.92 -2.39 -0.02 0.17 16 4 C -0.54 -29.55 8.02 25.60 0.21 -29.35 16 5 H 0.06 3.25 7.27 -2.91 -0.02 3.23 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.13 11.32 21.44 0.24 -52.88 16 8 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 N -0.59 -25.11 2.75 -830.20 -2.29 -27.40 16 13 C 0.06 1.73 7.68 127.77 0.98 2.71 16 14 C 0.53 23.75 7.52 86.79 0.65 24.40 16 15 O -0.61 -34.04 15.88 -3.87 -0.06 -34.10 16 16 C -0.11 -3.66 5.57 -20.09 -0.11 -3.77 16 17 C -0.12 -2.57 7.61 22.53 0.17 -2.39 16 18 C -0.03 -0.37 9.73 22.23 0.22 -0.15 16 19 C -0.45 -8.06 5.62 22.33 0.13 -7.93 16 20 S 1.42 15.21 14.18 -56.49 -0.80 14.40 16 21 C -0.50 -3.95 10.70 113.37 1.21 -2.73 16 22 O -0.93 -24.90 16.88 -148.98 -2.52 -27.41 16 23 C -0.08 -2.27 9.43 22.23 0.21 -2.06 16 24 C -0.11 -3.61 9.59 22.52 0.22 -3.39 16 25 H 0.05 2.31 7.67 -2.39 -0.02 2.29 16 26 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.09 1.92 7.03 -2.39 -0.02 1.91 16 30 H 0.07 2.23 6.97 -2.39 -0.02 2.21 16 31 H 0.10 2.26 5.22 -2.39 -0.01 2.25 16 32 H 0.18 2.98 4.04 -2.91 -0.01 2.97 16 33 H 0.21 -0.33 8.06 -2.91 -0.02 -0.36 16 34 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.12 3.46 7.44 -2.91 -0.02 3.44 16 38 H 0.10 4.03 7.79 -2.91 -0.02 4.01 16 Total: -1.00 -91.66 325.60 2.77 -88.89 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.08 Total: 8.64 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 5.09 Total: -15.10 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.04 Total: -80.28 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.58 Total: -61.52 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 15.21 SS G_CDS: -0.80 Total: 14.40 kcal Total: -91.66 2.77 -88.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.501 kcal (2) G-P(sol) polarization free energy of solvation -91.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds