Wall clock time and date at job start Tue Mar 31 2020 07:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47507 * 2 1 4 4 C 1.50702 * 109.47086 * 120.00342 * 2 1 3 5 5 H 1.08003 * 120.00230 * 119.99642 * 4 2 1 6 6 C 1.37870 * 119.99879 * 299.99584 * 4 2 1 7 7 N 1.31516 * 120.00245 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00300 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47140 * 89.99961 * 8 6 4 10 10 H 1.48496 * 109.47112 * 209.99973 * 8 6 4 11 11 H 1.48498 * 109.46859 * 330.00338 * 8 6 4 12 12 N 1.46502 * 109.46736 * 240.00084 * 2 1 3 13 13 C 1.46506 * 120.00034 * 299.99959 * 12 2 1 14 14 C 1.34779 * 119.99952 * 120.00381 * 12 2 1 15 15 O 1.21549 * 119.99744 * 6.98672 * 14 12 2 16 16 C 1.47849 * 119.99641 * 186.98689 * 14 12 2 17 17 C 1.39570 * 120.14580 * 20.29387 * 16 14 12 18 18 C 1.37962 * 119.85361 * 179.74326 * 17 16 14 19 19 C 1.38356 * 120.14023 * 0.52964 * 18 17 16 20 20 S 1.76198 * 119.85311 * 179.71965 * 19 18 17 21 21 C 1.81401 * 103.00161 * 270.02214 * 20 19 18 22 22 O 1.42094 * 103.00170 * 23.87436 * 20 19 18 23 23 C 1.38364 * 120.29510 * 359.74551 * 19 18 17 24 24 C 1.37954 * 120.14303 * 359.97438 * 23 19 18 25 25 H 1.09001 * 109.46648 * 300.00025 * 1 2 3 26 26 H 1.08997 * 109.46604 * 59.99713 * 1 2 3 27 27 H 1.08990 * 109.47507 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00464 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46895 * 85.95542 * 13 12 2 30 30 H 1.08994 * 109.46801 * 325.95721 * 13 12 2 31 31 H 1.09000 * 109.47068 * 205.95421 * 13 12 2 32 32 H 1.07998 * 120.07796 * 359.97438 * 17 16 14 33 33 H 1.07994 * 119.93138 * 180.27535 * 18 17 16 34 34 H 1.09006 * 109.47136 * 59.99780 * 21 20 19 35 35 H 1.09002 * 109.47209 * 179.97438 * 21 20 19 36 36 H 1.09004 * 109.47304 * 300.00251 * 21 20 19 37 37 H 1.08004 * 119.92388 * 180.02562 * 23 19 18 38 38 H 1.08003 * 120.07146 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9761 1.9949 3.9069 11 1 0.8471 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1919 1.0846 -1.8313 16 6 3.1582 -0.6798 -3.3631 17 6 2.3991 -1.7432 -3.8541 18 6 2.7420 -2.3365 -5.0516 19 6 3.8421 -1.8866 -5.7598 20 16 4.2776 -2.6546 -7.2847 21 6 5.4061 -3.9774 -6.7677 22 8 3.0495 -3.2225 -7.7187 23 6 4.6022 -0.8366 -5.2758 24 6 4.2667 -0.2309 -4.0826 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.9041 -0.5276 4.4375 29 1 0.7015 -2.1457 -1.9363 30 1 1.5998 -2.6143 -0.4729 31 1 2.4282 -2.5631 -2.0475 32 1 1.5430 -2.0985 -3.2998 33 1 2.1530 -3.1564 -5.4348 34 1 4.8857 -4.6551 -6.0908 35 1 5.7448 -4.5294 -7.6445 36 1 6.2655 -3.5430 -6.2570 37 1 5.4595 -0.4900 -5.8338 38 1 4.8606 0.5889 -3.7061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:45 Heat of formation + Delta-G solvation = -11.647100 kcal Electronic energy + Delta-G solvation = -21362.186226 eV Core-core repulsion = 18104.988934 eV Total energy + Delta-G solvation = -3257.197292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18259 -38.11867 -35.97365 -35.73411 -33.18458 -31.63016 -31.09002 -29.87961 -29.04936 -26.72870 -25.23580 -24.09852 -22.75350 -21.21305 -19.07377 -18.25691 -17.25050 -16.77249 -16.33395 -15.95652 -15.39128 -15.09609 -14.79951 -14.55024 -14.22893 -13.95752 -13.61740 -13.52121 -13.06967 -13.00714 -12.72280 -12.51397 -12.46928 -12.28542 -12.09447 -11.84943 -11.57354 -11.23690 -10.83995 -10.78862 -10.48101 -10.20900 -9.71472 -9.48016 -9.31937 -9.14823 -9.00382 -8.68647 -8.63765 -7.85969 -6.19616 -4.20985 0.50039 1.27513 1.59364 2.39623 3.05786 3.19819 3.33507 3.35464 3.58692 3.63099 3.90780 4.30553 4.69124 4.79164 4.85558 4.88401 4.97311 5.13724 5.19696 5.38022 5.52104 5.64817 5.67392 5.73375 5.88060 6.03484 6.09925 6.18117 6.19762 6.26790 6.30104 6.41535 6.73950 6.75651 7.04175 7.23727 7.55011 8.04657 8.37819 8.70836 8.81293 9.40584 10.92967 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.035498 B = 0.003409 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.590446 B = 8212.212901 C = 8315.716002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.064 0.936 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.577 5.577 13 C 0.067 3.933 14 C 0.542 3.458 15 O -0.542 6.542 16 C -0.083 4.083 17 C -0.125 4.125 18 C -0.065 4.065 19 C -0.450 4.450 20 S 1.331 4.669 21 C -0.498 4.498 22 O -0.858 6.858 23 C -0.056 4.056 24 C -0.083 4.083 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.267 0.733 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 -3.236 -21.519 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.128 3.872 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.306 5.306 13 C -0.076 4.076 14 C 0.329 3.671 15 O -0.421 6.421 16 C -0.086 4.086 17 C -0.144 4.144 18 C -0.084 4.084 19 C -0.547 4.547 20 S 1.529 4.471 21 C -0.655 4.655 22 O -0.854 6.854 23 C -0.075 4.075 24 C -0.103 4.103 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.968 -2.454 -22.049 22.974 hybrid contribution -1.616 -0.805 2.012 2.704 sum 4.352 -3.259 -20.037 20.761 Atomic orbital electron populations 1.22463 0.98856 1.01241 0.99396 1.19347 0.90013 0.95214 0.82666 0.91811 1.21122 1.32886 1.14338 0.88434 0.90280 1.24859 0.95628 0.96595 0.95576 1.69869 1.45049 1.40156 0.98004 0.86908 0.80408 0.83774 0.77567 1.20348 1.22027 1.18806 1.47781 1.48535 1.11587 1.22731 1.22286 0.98788 0.83203 1.03328 1.18295 0.79417 0.85969 0.83434 1.90733 1.53911 1.19694 1.77775 1.20428 0.96522 0.96028 0.95666 1.22493 1.00913 0.94939 0.96070 1.21067 0.95291 0.98815 0.93241 1.27752 1.03060 1.07149 1.16730 1.69442 0.93514 0.97642 0.86546 1.27763 1.13111 1.15544 1.09042 1.93105 1.41384 1.78513 1.72400 1.20774 0.98029 0.93703 0.94982 1.21408 0.95713 0.99118 0.94054 0.92956 0.94768 0.92481 0.92350 0.92962 0.89485 0.90999 0.82716 0.85280 0.89886 0.87708 0.86957 0.84176 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.67 37.16 0.32 -3.14 16 2 C 0.23 5.53 2.22 -69.08 -0.15 5.37 16 3 H 0.06 1.70 5.98 -51.93 -0.31 1.39 16 4 C -0.53 -14.60 8.60 -34.44 -0.30 -14.89 16 5 H 0.08 2.34 7.51 -52.48 -0.39 1.95 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 8 Si 0.88 21.72 24.37 -169.99 -4.14 17.58 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 12 N -0.58 -11.98 2.75 -176.37 -0.49 -12.47 16 13 C 0.07 1.11 7.68 59.85 0.46 1.57 16 14 C 0.54 11.10 7.52 -12.33 -0.09 11.01 16 15 O -0.54 -12.90 15.88 5.32 0.08 -12.82 16 16 C -0.08 -1.34 5.57 -104.97 -0.58 -1.92 16 17 C -0.13 -1.75 7.61 -39.19 -0.30 -2.05 16 18 C -0.07 -0.83 9.43 -39.64 -0.37 -1.21 16 19 C -0.45 -4.63 5.62 -39.49 -0.22 -4.85 16 20 S 1.33 9.37 14.18 -107.50 -1.52 7.85 16 21 C -0.50 -3.06 10.70 101.05 1.08 -1.98 16 22 O -0.86 -11.73 16.88 -35.23 -0.59 -12.33 16 23 C -0.06 -0.53 9.73 -39.64 -0.39 -0.91 16 24 C -0.08 -1.11 9.59 -39.19 -0.38 -1.48 16 25 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.05 0.73 7.03 -51.93 -0.36 0.37 16 30 H 0.09 1.57 6.97 -51.93 -0.36 1.21 16 31 H 0.07 1.04 5.22 -51.93 -0.27 0.77 16 32 H 0.16 2.02 4.04 -52.49 -0.21 1.81 16 33 H 0.13 1.65 7.44 -52.49 -0.39 1.26 16 34 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.11 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.14 1.83 7.79 -52.48 -0.41 1.42 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -38.14 318.78 -6.68 -44.82 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.58 Total: 0.98 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.02 Total: -12.42 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.29 Total: -38.46 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.51 Total: -25.15 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.58 kcal Atomic # 16 Polarization: 9.37 SS G_CDS: -1.52 Total: 7.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.14 -6.68 -44.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.170 kcal (2) G-P(sol) polarization free energy of solvation -38.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds