Wall clock time and date at job start Tue Mar 31 2020 07:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42893 * 114.00352 * 2 1 4 4 H 1.08999 * 109.47033 * 330.00309 * 3 2 1 5 5 C 1.53007 * 109.47280 * 90.00030 * 3 2 1 6 6 C 1.50703 * 109.47580 * 210.00112 * 3 2 1 7 7 O 1.21296 * 119.99667 * 354.99835 * 6 3 2 8 8 N 1.34774 * 120.00463 * 174.99876 * 6 3 2 9 9 C 1.40133 * 120.00025 * 185.52339 * 8 6 3 10 10 C 1.38641 * 120.10311 * 24.81460 * 9 8 6 11 11 C 1.38248 * 120.01146 * 180.02562 * 10 9 8 12 12 C 1.38301 * 120.20973 * 0.02562 * 11 10 9 13 13 C 1.38187 * 120.19847 * 359.97438 * 12 11 10 14 14 C 1.38790 * 119.99257 * 0.02562 * 13 12 11 15 15 S 1.76193 * 120.10614 * 179.97438 * 14 13 12 16 16 C 1.81397 * 103.00345 * 0.02562 * 15 14 13 17 17 C 1.50693 * 109.47592 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99935 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00190 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47286 * 59.99751 * 21 19 17 23 23 H 1.48498 * 109.47064 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47160 * 299.99916 * 21 19 17 25 25 H 1.08993 * 109.47366 * 300.00277 * 1 2 3 26 26 H 1.09000 * 109.47022 * 60.00009 * 1 2 3 27 27 H 1.09006 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46890 * 59.99625 * 5 3 2 29 29 H 1.08997 * 109.47177 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.46529 * 299.99922 * 5 3 2 31 31 H 0.97002 * 119.99281 * 5.52939 * 8 6 3 32 32 H 1.08000 * 119.99500 * 0.04626 * 10 9 8 33 33 H 1.08003 * 119.89424 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.89635 * 180.27391 * 12 11 10 35 35 H 1.08006 * 120.00536 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.46954 * 299.99811 * 16 15 14 37 37 H 1.09005 * 109.47245 * 59.99548 * 16 15 14 38 38 H 0.97001 * 119.99564 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.7897 0.2043 -1.0914 8 7 4.0255 2.4039 -0.9224 9 6 5.2023 2.3818 -1.6829 10 6 5.4051 1.3815 -2.6213 11 6 6.5670 1.3613 -3.3702 12 6 7.5304 2.3364 -3.1866 13 6 7.3372 3.3374 -2.2537 14 6 6.1738 3.3658 -1.4973 15 16 5.9247 4.6403 -0.3066 16 6 7.4342 5.6356 -0.4521 17 6 7.3734 6.7857 0.5198 18 1 6.5124 6.9061 1.1606 19 6 8.4163 7.6848 0.5901 20 7 9.4645 7.5384 -0.1907 21 14 8.3405 9.1108 1.7944 22 1 8.2266 8.5845 3.1783 23 1 9.5763 9.9255 1.6753 24 1 7.1585 9.9557 1.4873 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.8829 1.0773 1.9564 29 1 2.6607 2.7672 1.4425 30 1 1.2568 1.8014 1.9563 31 1 3.7052 3.2396 -0.5484 32 1 4.6552 0.6182 -2.7675 33 1 6.7229 0.5814 -4.1009 34 1 8.4342 2.3183 -3.7775 35 1 8.0914 4.0977 -2.1132 36 1 8.3016 5.0152 -0.2264 37 1 7.5182 6.0219 -1.4680 38 1 10.1983 8.1708 -0.1409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108200980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:41 Heat of formation + Delta-G solvation = -59.213578 kcal Electronic energy + Delta-G solvation = -20815.160848 eV Core-core repulsion = 17555.900919 eV Total energy + Delta-G solvation = -3259.259929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59430 -38.65299 -37.46822 -34.73623 -33.30217 -32.01489 -30.76643 -29.10470 -28.62898 -27.08181 -24.63303 -23.43102 -22.74757 -21.92685 -20.20380 -18.22491 -17.39895 -17.04772 -16.36620 -16.26274 -15.69954 -15.21177 -15.04777 -14.87148 -14.39747 -14.05947 -13.61046 -13.41847 -13.14211 -13.02370 -12.83139 -12.59436 -12.40930 -12.28402 -12.06036 -11.75978 -11.44903 -11.21555 -10.96148 -10.82019 -10.42533 -10.20241 -10.04634 -9.75607 -9.51458 -9.24292 -9.19898 -8.67519 -8.02013 -6.63022 -6.31270 -4.37518 1.47164 1.67666 2.31969 2.56900 2.74787 3.20578 3.24815 3.27590 3.53160 3.76391 4.08139 4.25222 4.43511 4.61342 4.72590 5.00646 5.06288 5.07155 5.24949 5.31428 5.33581 5.40196 5.44538 5.56577 5.76724 5.80372 5.88953 6.18836 6.42239 6.53790 6.67000 6.76943 6.85222 6.90392 6.93790 7.27287 7.43549 7.60683 7.84044 8.08017 8.63018 9.26708 10.79809 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003936 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.235732 B = 7111.318639 C = 8636.223710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.072 3.928 4 H 0.090 0.910 5 C -0.174 4.174 6 C 0.513 3.487 7 O -0.503 6.503 8 N -0.657 5.657 9 C 0.151 3.849 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.114 4.114 14 C -0.096 4.096 15 S -0.172 6.172 16 C 0.079 3.921 17 C -0.521 4.521 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 -10.277 -2.188 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.011 3.989 4 H 0.108 0.892 5 C -0.232 4.232 6 C 0.299 3.701 7 O -0.376 6.376 8 N -0.304 5.304 9 C 0.050 3.950 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.138 4.138 13 C -0.139 4.139 14 C -0.211 4.211 15 S 0.074 5.926 16 C -0.068 4.068 17 C -0.561 4.561 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.251 0.749 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.442 -10.850 -1.657 18.140 hybrid contribution 0.840 1.259 -0.062 1.515 sum -13.602 -9.592 -1.719 16.732 Atomic orbital electron populations 1.22890 0.80539 1.03259 1.00135 1.88045 1.19703 1.25023 1.94953 1.21901 0.92934 0.86984 0.97083 0.89220 1.22274 1.03649 1.02658 0.94598 1.20485 0.86305 0.83661 0.79627 1.90679 1.68363 1.29557 1.49034 1.43442 1.23807 1.11211 1.51897 1.17193 0.86458 0.97094 0.94208 1.21208 0.99250 0.98764 0.94764 1.20951 0.94092 0.99105 1.00116 1.21038 0.99338 0.94826 0.98613 1.21228 0.96450 0.99797 0.96391 1.21793 0.96383 1.00542 1.02391 1.84957 1.36065 1.25994 1.45616 1.21359 0.88497 0.95548 1.01369 1.20564 1.05106 1.09133 1.21261 0.91400 1.24949 0.94716 0.97919 0.96002 1.69931 1.07464 1.37136 1.38040 0.86378 0.77661 0.81352 0.81090 1.19824 1.20944 1.19827 0.93702 0.93787 0.89112 0.90760 0.90347 0.90975 0.74904 0.83976 0.86085 0.86068 0.84674 0.93684 0.93710 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.34 9.88 -55.09 -0.54 -4.89 16 3 C 0.07 0.79 3.13 -27.88 -0.09 0.70 16 4 H 0.09 0.73 7.79 -51.93 -0.40 0.32 16 5 C -0.17 -1.63 9.47 37.16 0.35 -1.28 16 6 C 0.51 7.51 6.99 -10.99 -0.08 7.44 16 7 O -0.50 -9.08 13.68 -14.31 -0.20 -9.27 16 8 N -0.66 -9.75 5.14 -9.71 -0.05 -9.80 16 9 C 0.15 2.62 6.44 -83.43 -0.54 2.08 16 10 C -0.12 -1.96 8.72 -39.43 -0.34 -2.30 16 11 C -0.12 -1.82 10.04 -39.55 -0.40 -2.21 16 12 C -0.12 -1.85 10.04 -39.58 -0.40 -2.24 16 13 C -0.11 -2.10 9.36 -39.40 -0.37 -2.47 16 14 C -0.10 -1.81 6.12 -38.90 -0.24 -2.05 16 15 S -0.17 -3.52 20.55 -107.50 -2.21 -5.73 16 16 C 0.08 1.94 4.09 36.00 0.15 2.09 16 17 C -0.52 -13.91 9.13 -34.44 -0.31 -14.23 16 18 H 0.07 1.78 7.71 -52.48 -0.40 1.38 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 20 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 21 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 26 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.69 7.76 -51.93 -0.40 0.29 16 30 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 31 H 0.41 5.45 7.25 -40.82 -0.30 5.15 16 32 H 0.14 2.36 5.79 -52.49 -0.30 2.06 16 33 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.14 2.63 5.88 -52.48 -0.31 2.32 16 36 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16 37 H 0.04 1.15 7.75 -51.92 -0.40 0.74 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -31.08 335.40 -8.48 -39.57 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.99 Total: 5.12 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.27 Total: -11.41 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.69 Total: -33.89 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.74 Total: -14.16 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.21 Total: -5.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.08 -8.48 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108200980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.645 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds