Wall clock time and date at job start Tue Mar 31 2020 07:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42893 * 114.00352 * 2 1 4 4 H 1.08999 * 109.47033 * 330.00309 * 3 2 1 5 5 C 1.53007 * 109.47280 * 90.00030 * 3 2 1 6 6 C 1.50703 * 109.47580 * 210.00112 * 3 2 1 7 7 O 1.21296 * 119.99667 * 354.99835 * 6 3 2 8 8 N 1.34774 * 120.00463 * 174.99876 * 6 3 2 9 9 C 1.40133 * 120.00025 * 185.52339 * 8 6 3 10 10 C 1.38641 * 120.10311 * 24.81460 * 9 8 6 11 11 C 1.38248 * 120.01146 * 180.02562 * 10 9 8 12 12 C 1.38301 * 120.20973 * 0.02562 * 11 10 9 13 13 C 1.38187 * 120.19847 * 359.97438 * 12 11 10 14 14 C 1.38790 * 119.99257 * 0.02562 * 13 12 11 15 15 S 1.76193 * 120.10614 * 179.97438 * 14 13 12 16 16 C 1.81397 * 103.00345 * 0.02562 * 15 14 13 17 17 C 1.50693 * 109.47592 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99935 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00190 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47286 * 59.99751 * 21 19 17 23 23 H 1.48498 * 109.47064 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47160 * 299.99916 * 21 19 17 25 25 H 1.08993 * 109.47366 * 300.00277 * 1 2 3 26 26 H 1.09000 * 109.47022 * 60.00009 * 1 2 3 27 27 H 1.09006 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46890 * 59.99625 * 5 3 2 29 29 H 1.08997 * 109.47177 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.46529 * 299.99922 * 5 3 2 31 31 H 0.97002 * 119.99281 * 5.52939 * 8 6 3 32 32 H 1.08000 * 119.99500 * 0.04626 * 10 9 8 33 33 H 1.08003 * 119.89424 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.89635 * 180.27391 * 12 11 10 35 35 H 1.08006 * 120.00536 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.46954 * 299.99811 * 16 15 14 37 37 H 1.09005 * 109.47245 * 59.99548 * 16 15 14 38 38 H 0.97001 * 119.99564 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.7897 0.2043 -1.0914 8 7 4.0255 2.4039 -0.9224 9 6 5.2023 2.3818 -1.6829 10 6 5.4051 1.3815 -2.6213 11 6 6.5670 1.3613 -3.3702 12 6 7.5304 2.3364 -3.1866 13 6 7.3372 3.3374 -2.2537 14 6 6.1738 3.3658 -1.4973 15 16 5.9247 4.6403 -0.3066 16 6 7.4342 5.6356 -0.4521 17 6 7.3734 6.7857 0.5198 18 1 6.5124 6.9061 1.1606 19 6 8.4163 7.6848 0.5901 20 7 9.4645 7.5384 -0.1907 21 14 8.3405 9.1108 1.7944 22 1 8.2266 8.5845 3.1783 23 1 9.5763 9.9255 1.6753 24 1 7.1585 9.9557 1.4873 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.8829 1.0773 1.9564 29 1 2.6607 2.7672 1.4425 30 1 1.2568 1.8014 1.9563 31 1 3.7052 3.2396 -0.5484 32 1 4.6552 0.6182 -2.7675 33 1 6.7229 0.5814 -4.1009 34 1 8.4342 2.3183 -3.7775 35 1 8.0914 4.0977 -2.1132 36 1 8.3016 5.0152 -0.2264 37 1 7.5182 6.0219 -1.4680 38 1 10.1983 8.1708 -0.1409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108200980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:40 Heat of formation + Delta-G solvation = -77.443721 kcal Electronic energy + Delta-G solvation = -20815.951366 eV Core-core repulsion = 17555.900919 eV Total energy + Delta-G solvation = -3260.050447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77792 -39.77678 -38.48951 -36.00451 -35.32560 -32.91015 -32.16517 -30.66821 -30.26762 -27.70606 -25.75191 -25.21430 -24.09050 -23.19227 -21.36881 -19.55320 -18.60988 -18.38928 -18.00938 -17.36826 -16.81100 -16.65186 -16.29857 -15.93274 -15.81764 -15.29662 -14.88195 -14.73658 -14.70421 -14.36575 -14.24691 -13.97380 -13.59924 -13.41912 -13.10708 -12.84369 -12.73366 -12.71006 -12.53547 -12.13412 -11.91964 -11.66904 -11.56691 -11.02426 -10.99866 -10.85217 -10.60304 -10.49990 -9.35252 -8.35525 -8.20746 -6.50138 0.15478 0.30662 0.74513 1.41264 1.41954 1.44189 1.52705 1.66189 1.80081 2.35761 2.75224 2.92063 3.00067 3.43754 3.83727 3.87388 3.95381 4.13095 4.35132 4.44762 4.46834 4.47937 4.56120 4.63254 4.75807 4.83921 4.86010 4.87496 4.90377 5.11754 5.16359 5.25507 5.40531 5.51861 5.54568 5.81465 5.94916 6.02645 6.30676 6.56903 6.92598 7.18874 8.76313 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003936 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.235732 B = 7111.318639 C = 8636.223710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.078 3.922 4 H 0.123 0.877 5 C -0.171 4.171 6 C 0.510 3.490 7 O -0.541 6.541 8 N -0.654 5.654 9 C 0.149 3.851 10 C -0.127 4.127 11 C -0.105 4.105 12 C -0.116 4.116 13 C -0.130 4.130 14 C -0.122 4.122 15 S -0.150 6.150 16 C 0.082 3.918 17 C -0.542 4.542 18 H 0.070 0.930 19 C 0.018 3.982 20 N -0.923 5.923 21 Si 0.977 3.023 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.263 1.263 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.421 0.579 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.114 0.886 36 H 0.019 0.981 37 H 0.023 0.977 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 -10.512 -1.989 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.311 6.311 3 C 0.017 3.983 4 H 0.140 0.860 5 C -0.228 4.228 6 C 0.299 3.701 7 O -0.417 6.417 8 N -0.300 5.300 9 C 0.048 3.952 10 C -0.149 4.149 11 C -0.127 4.127 12 C -0.136 4.136 13 C -0.155 4.155 14 C -0.237 4.237 15 S 0.095 5.905 16 C -0.066 4.066 17 C -0.581 4.581 18 H 0.088 0.912 19 C -0.184 4.184 20 N -0.561 5.561 21 Si 0.800 3.200 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.259 0.741 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.132 0.868 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.185 -11.093 -1.460 19.675 hybrid contribution 1.326 1.170 -0.224 1.783 sum -14.858 -9.922 -1.684 17.946 Atomic orbital electron populations 1.23133 0.78300 1.04389 1.01656 1.88004 1.22195 1.25706 1.95151 1.21971 0.91152 0.87571 0.97632 0.85962 1.22280 1.04762 1.02196 0.93604 1.21306 0.87289 0.82723 0.78815 1.90648 1.69527 1.30781 1.50718 1.43493 1.23113 1.11889 1.51516 1.17347 0.86846 0.96572 0.94452 1.21408 1.00079 0.98507 0.94899 1.21376 0.92708 0.99048 0.99522 1.21326 1.00589 0.93829 0.97833 1.21238 0.96062 1.00497 0.97689 1.21799 0.97658 1.01086 1.03175 1.84517 1.32955 1.26133 1.46904 1.21000 0.90220 0.95644 0.99707 1.20931 1.05420 1.10023 1.21722 0.91205 1.25904 0.94188 1.00619 0.97667 1.70050 1.08187 1.38248 1.39572 0.85316 0.78018 0.77910 0.78767 1.19041 1.20414 1.18791 0.91793 0.92576 0.88340 0.92652 0.89868 0.88310 0.74083 0.83789 0.82406 0.83228 0.86753 0.96233 0.95891 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.39 -8.83 9.88 -129.99 -1.28 -10.12 16 3 C 0.08 1.55 3.13 29.85 0.09 1.64 16 4 H 0.12 1.61 7.79 -2.39 -0.02 1.60 16 5 C -0.17 -2.88 9.47 71.98 0.68 -2.20 16 6 C 0.51 14.51 6.99 87.66 0.61 15.13 16 7 O -0.54 -19.35 13.68 15.91 0.22 -19.13 16 8 N -0.65 -18.96 5.14 -303.01 -1.56 -20.51 16 9 C 0.15 5.11 6.44 38.22 0.25 5.35 16 10 C -0.13 -4.07 8.72 22.37 0.19 -3.88 16 11 C -0.11 -2.94 10.04 22.29 0.22 -2.71 16 12 C -0.12 -3.48 10.04 22.27 0.22 -3.26 16 13 C -0.13 -4.90 9.36 22.39 0.21 -4.69 16 14 C -0.12 -4.69 6.12 22.71 0.14 -4.55 16 15 S -0.15 -6.25 20.55 -56.49 -1.16 -7.41 16 16 C 0.08 4.21 4.09 71.23 0.29 4.50 16 17 C -0.54 -29.58 9.13 25.60 0.23 -29.35 16 18 H 0.07 3.69 7.71 -2.91 -0.02 3.67 16 19 C 0.02 0.97 5.46 84.66 0.46 1.43 16 20 N -0.92 -52.83 13.29 21.45 0.28 -52.55 16 21 Si 0.98 41.93 29.54 68.60 2.03 43.96 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 26 H 0.06 0.57 8.08 -2.39 -0.02 0.55 16 27 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.31 7.76 -2.39 -0.02 1.29 16 30 H 0.10 1.14 7.87 -2.39 -0.02 1.12 16 31 H 0.42 10.72 7.25 -92.71 -0.67 10.05 16 32 H 0.14 4.63 5.79 -2.91 -0.02 4.61 16 33 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.11 4.73 5.88 -2.91 -0.02 4.71 16 36 H 0.02 1.07 7.75 -2.39 -0.02 1.06 16 37 H 0.02 1.25 7.75 -2.39 -0.02 1.23 16 38 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -68.84 335.40 3.77 -65.07 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.41 Total: 21.78 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.84 Total: -21.10 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -1.27 Total: -73.06 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.07 Total: -29.25 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -1.16 Total: -7.41 kcal Total: -68.84 3.77 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108200980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.371 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds