Wall clock time and date at job start Tue Mar 31 2020 07:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 113.99897 * 2 1 4 4 H 1.08997 * 109.47636 * 30.00281 * 3 2 1 5 5 C 1.52998 * 109.47257 * 269.99827 * 3 2 1 6 6 C 1.50703 * 109.47086 * 150.00011 * 3 2 1 7 7 O 1.21293 * 119.99899 * 5.00289 * 6 3 2 8 8 N 1.34778 * 120.00323 * 184.99566 * 6 3 2 9 9 C 1.40133 * 120.00289 * 185.53211 * 8 6 3 10 10 C 1.38651 * 120.10296 * 24.82067 * 9 8 6 11 11 C 1.38248 * 120.01135 * 179.97438 * 10 9 8 12 12 C 1.38301 * 120.20973 * 359.97438 * 11 10 9 13 13 C 1.38197 * 120.19854 * 0.02562 * 12 11 10 14 14 C 1.38785 * 119.98890 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.10263 * 180.02562 * 14 13 12 16 16 C 1.81404 * 102.99959 * 0.02562 * 15 14 13 17 17 C 1.50693 * 109.47201 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99948 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00184 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00064 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00195 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47199 * 89.99466 * 21 19 17 23 23 H 1.48500 * 109.47302 * 209.99766 * 21 19 17 24 24 H 1.48504 * 109.47258 * 329.99754 * 21 19 17 25 25 H 1.08996 * 109.47008 * 60.00021 * 1 2 3 26 26 H 1.09005 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46806 * 299.99419 * 1 2 3 28 28 H 1.09001 * 109.47631 * 300.00604 * 5 3 2 29 29 H 1.09003 * 109.47041 * 60.00717 * 5 3 2 30 30 H 1.09000 * 109.47268 * 180.02562 * 5 3 2 31 31 H 0.97000 * 119.99382 * 5.53691 * 8 6 3 32 32 H 1.08004 * 119.98783 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.89420 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.89635 * 180.27391 * 12 11 10 35 35 H 1.08001 * 120.00085 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.46873 * 300.00343 * 16 15 14 37 37 H 1.08999 * 109.47196 * 59.99670 * 16 15 14 38 38 H 0.96996 * 120.00096 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3386 1.2638 0.7104 7 8 3.7898 0.2043 1.0914 8 7 4.0255 2.4039 0.9224 9 6 5.3111 2.3545 1.4778 10 6 6.0833 1.2108 1.3432 11 6 7.3516 1.1642 1.8914 12 6 7.8549 2.2563 2.5746 13 6 7.0927 3.4007 2.7140 14 6 5.8184 3.4563 2.1669 15 16 4.8444 4.9141 2.3422 16 6 5.9285 6.0179 3.2895 17 6 5.2263 7.3301 3.5261 18 1 4.2279 7.4848 3.1444 19 6 5.8589 8.3335 4.2289 20 7 7.0749 8.1453 4.6932 21 14 4.9889 9.9604 4.5216 22 1 4.2248 9.8914 5.7932 23 1 5.9934 11.0508 4.6062 24 1 4.0565 10.2323 3.3982 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.8829 1.0774 -1.9564 29 1 1.2568 1.8015 -1.9563 30 1 2.6614 2.7669 -1.4425 31 1 3.6299 3.2586 0.6905 32 1 5.6938 0.3561 0.8099 33 1 7.9516 0.2725 1.7850 34 1 8.8480 2.2161 2.9971 35 1 7.4890 4.2518 3.2478 36 1 6.1688 5.5568 4.2475 37 1 6.8474 6.1927 2.7299 38 1 7.5198 8.8511 5.1880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108200983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:43 Heat of formation + Delta-G solvation = -59.351756 kcal Electronic energy + Delta-G solvation = -20794.420413 eV Core-core repulsion = 17535.154492 eV Total energy + Delta-G solvation = -3259.265921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59448 -38.65008 -37.46454 -34.73385 -33.30540 -32.02473 -30.76761 -29.12518 -28.63373 -27.07794 -24.63143 -23.44810 -22.76434 -21.90912 -20.18999 -18.20085 -17.44124 -17.01944 -16.36604 -16.30558 -15.74933 -15.22633 -15.05304 -14.77781 -14.37911 -14.08428 -13.68106 -13.31065 -13.12186 -12.99559 -12.92719 -12.70045 -12.42041 -12.26441 -12.07684 -11.77255 -11.44898 -11.19202 -10.99062 -10.80054 -10.41691 -10.22422 -10.06068 -9.74387 -9.50336 -9.24492 -9.19610 -8.68165 -8.01802 -6.63268 -6.31680 -4.37818 1.47040 1.67750 2.31992 2.58494 2.73367 3.18743 3.25080 3.28571 3.53309 3.76314 4.08453 4.24931 4.42222 4.61287 4.72492 5.00892 5.05974 5.09747 5.23864 5.27952 5.32277 5.40464 5.40646 5.56648 5.76166 5.79766 5.80953 6.18981 6.42247 6.54076 6.67238 6.76943 6.85378 6.90159 6.93596 7.27418 7.43632 7.60606 7.83702 8.08083 8.62993 9.26458 10.79453 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.003905 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.433775 B = 7167.708764 C = 8591.083399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.071 3.929 4 H 0.091 0.909 5 C -0.171 4.171 6 C 0.513 3.487 7 O -0.503 6.503 8 N -0.657 5.657 9 C 0.151 3.849 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.114 4.114 14 C -0.096 4.096 15 S -0.173 6.173 16 C 0.079 3.921 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.414 0.586 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.135 0.865 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -11.931 -9.940 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.010 3.990 4 H 0.109 0.891 5 C -0.229 4.229 6 C 0.299 3.701 7 O -0.376 6.376 8 N -0.303 5.303 9 C 0.051 3.949 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.138 4.138 13 C -0.139 4.139 14 C -0.211 4.211 15 S 0.073 5.927 16 C -0.068 4.068 17 C -0.560 4.560 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.251 0.749 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.294 -12.438 -9.980 17.975 hybrid contribution 0.542 1.337 0.652 1.583 sum -7.752 -11.101 -9.329 16.442 Atomic orbital electron populations 1.22900 0.80467 1.03272 1.00211 1.88036 1.19783 1.24965 1.94951 1.21889 0.93168 0.87125 0.96852 0.89118 1.22245 1.03617 1.02374 0.94673 1.20480 0.86332 0.83830 0.79426 1.90677 1.68688 1.29822 1.48457 1.43433 1.15297 1.09910 1.61677 1.17193 0.84675 0.94820 0.98238 1.21216 0.93674 0.97656 1.01419 1.20953 0.95384 0.98484 0.99432 1.21041 0.99728 0.93163 0.99898 1.21227 0.92947 0.99332 1.00353 1.21788 0.99028 0.98579 1.01730 1.84970 1.29024 1.07613 1.71109 1.21364 0.95139 0.94351 0.95941 1.20602 1.02125 0.96550 1.36701 0.91359 1.24951 0.94902 0.98965 0.94802 1.69939 1.12457 1.34215 1.35951 0.86319 0.79240 0.82015 0.78908 1.20252 1.20858 1.19505 0.93736 0.89107 0.93644 0.90931 0.90941 0.90555 0.74910 0.83946 0.86081 0.86071 0.84681 0.93688 0.93688 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.37 9.89 -55.09 -0.54 -4.91 16 3 C 0.07 0.77 3.13 -27.88 -0.09 0.69 16 4 H 0.09 0.79 7.79 -51.93 -0.40 0.39 16 5 C -0.17 -1.45 9.48 37.16 0.35 -1.10 16 6 C 0.51 7.51 6.99 -10.98 -0.08 7.43 16 7 O -0.50 -9.08 13.68 -14.31 -0.20 -9.27 16 8 N -0.66 -9.72 5.14 -9.71 -0.05 -9.77 16 9 C 0.15 2.62 6.44 -83.43 -0.54 2.08 16 10 C -0.12 -1.95 8.72 -39.43 -0.34 -2.30 16 11 C -0.12 -1.81 10.04 -39.55 -0.40 -2.21 16 12 C -0.12 -1.85 10.04 -39.57 -0.40 -2.24 16 13 C -0.11 -2.09 9.36 -39.39 -0.37 -2.46 16 14 C -0.10 -1.82 6.12 -38.90 -0.24 -2.05 16 15 S -0.17 -3.54 20.55 -107.50 -2.21 -5.75 16 16 C 0.08 1.94 4.09 36.00 0.15 2.08 16 17 C -0.52 -13.89 9.13 -34.44 -0.31 -14.20 16 18 H 0.07 1.80 7.71 -52.48 -0.40 1.39 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 21 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 30 H 0.08 0.58 8.12 -51.93 -0.42 0.15 16 31 H 0.41 5.44 7.62 -40.82 -0.31 5.13 16 32 H 0.14 2.37 5.79 -52.48 -0.30 2.06 16 33 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.14 2.63 5.88 -52.49 -0.31 2.32 16 36 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16 37 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -31.11 336.15 -8.51 -39.61 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.02 Total: 4.89 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.27 Total: -11.24 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.69 Total: -33.85 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.74 Total: -14.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.21 Total: -5.75 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.11 -8.51 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108200983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.740 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds