Wall clock time and date at job start Tue Mar 31 2020 07:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 113.99897 * 2 1 4 4 H 1.08997 * 109.47636 * 30.00281 * 3 2 1 5 5 C 1.52998 * 109.47257 * 269.99827 * 3 2 1 6 6 C 1.50703 * 109.47086 * 150.00011 * 3 2 1 7 7 O 1.21293 * 119.99899 * 5.00289 * 6 3 2 8 8 N 1.34778 * 120.00323 * 184.99566 * 6 3 2 9 9 C 1.40133 * 120.00289 * 185.53211 * 8 6 3 10 10 C 1.38651 * 120.10296 * 24.82067 * 9 8 6 11 11 C 1.38248 * 120.01135 * 179.97438 * 10 9 8 12 12 C 1.38301 * 120.20973 * 359.97438 * 11 10 9 13 13 C 1.38197 * 120.19854 * 0.02562 * 12 11 10 14 14 C 1.38785 * 119.98890 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.10263 * 180.02562 * 14 13 12 16 16 C 1.81404 * 102.99959 * 0.02562 * 15 14 13 17 17 C 1.50693 * 109.47201 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99948 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00184 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00064 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00195 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47199 * 89.99466 * 21 19 17 23 23 H 1.48500 * 109.47302 * 209.99766 * 21 19 17 24 24 H 1.48504 * 109.47258 * 329.99754 * 21 19 17 25 25 H 1.08996 * 109.47008 * 60.00021 * 1 2 3 26 26 H 1.09005 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46806 * 299.99419 * 1 2 3 28 28 H 1.09001 * 109.47631 * 300.00604 * 5 3 2 29 29 H 1.09003 * 109.47041 * 60.00717 * 5 3 2 30 30 H 1.09000 * 109.47268 * 180.02562 * 5 3 2 31 31 H 0.97000 * 119.99382 * 5.53691 * 8 6 3 32 32 H 1.08004 * 119.98783 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.89420 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.89635 * 180.27391 * 12 11 10 35 35 H 1.08001 * 120.00085 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.46873 * 300.00343 * 16 15 14 37 37 H 1.08999 * 109.47196 * 59.99670 * 16 15 14 38 38 H 0.96996 * 120.00096 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3386 1.2638 0.7104 7 8 3.7898 0.2043 1.0914 8 7 4.0255 2.4039 0.9224 9 6 5.3111 2.3545 1.4778 10 6 6.0833 1.2108 1.3432 11 6 7.3516 1.1642 1.8914 12 6 7.8549 2.2563 2.5746 13 6 7.0927 3.4007 2.7140 14 6 5.8184 3.4563 2.1669 15 16 4.8444 4.9141 2.3422 16 6 5.9285 6.0179 3.2895 17 6 5.2263 7.3301 3.5261 18 1 4.2279 7.4848 3.1444 19 6 5.8589 8.3335 4.2289 20 7 7.0749 8.1453 4.6932 21 14 4.9889 9.9604 4.5216 22 1 4.2248 9.8914 5.7932 23 1 5.9934 11.0508 4.6062 24 1 4.0565 10.2323 3.3982 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.8829 1.0774 -1.9564 29 1 1.2568 1.8015 -1.9563 30 1 2.6614 2.7669 -1.4425 31 1 3.6299 3.2586 0.6905 32 1 5.6938 0.3561 0.8099 33 1 7.9516 0.2725 1.7850 34 1 8.8480 2.2161 2.9971 35 1 7.4890 4.2518 3.2478 36 1 6.1688 5.5568 4.2475 37 1 6.8474 6.1927 2.7299 38 1 7.5198 8.8511 5.1880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108200983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:43 Heat of formation + Delta-G solvation = -77.577158 kcal Electronic energy + Delta-G solvation = -20795.210726 eV Core-core repulsion = 17535.154492 eV Total energy + Delta-G solvation = -3260.056234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77748 -39.77557 -38.48980 -36.00197 -35.32798 -32.89376 -32.16857 -30.66750 -30.28599 -27.71203 -25.73372 -25.22390 -24.11364 -23.17483 -21.35356 -19.53135 -18.62487 -18.39509 -18.01855 -17.37223 -16.83518 -16.76266 -16.13775 -16.02353 -15.75051 -15.34332 -14.86380 -14.73640 -14.70689 -14.32423 -14.22831 -13.97646 -13.65107 -13.37436 -13.15832 -12.86494 -12.76653 -12.66874 -12.53149 -12.11442 -11.91779 -11.64911 -11.56407 -11.06163 -11.00257 -10.86162 -10.59880 -10.48808 -9.35135 -8.35837 -8.21094 -6.50327 0.15418 0.30673 0.74297 1.41683 1.42263 1.42796 1.54170 1.64948 1.80081 2.35536 2.75274 2.91890 2.99834 3.43399 3.84274 3.87545 3.96967 4.13095 4.35042 4.44732 4.46630 4.47620 4.55144 4.64520 4.76613 4.83945 4.85824 4.86615 4.90307 5.11774 5.15924 5.25630 5.40574 5.51919 5.54608 5.81267 5.94804 6.02004 6.30466 6.56914 6.92664 7.18721 8.76227 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.003905 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.433775 B = 7167.708764 C = 8591.083399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.391 6.391 3 C 0.075 3.925 4 H 0.115 0.885 5 C -0.166 4.166 6 C 0.510 3.490 7 O -0.541 6.541 8 N -0.653 5.653 9 C 0.149 3.851 10 C -0.127 4.127 11 C -0.105 4.105 12 C -0.116 4.116 13 C -0.130 4.130 14 C -0.122 4.122 15 S -0.151 6.151 16 C 0.082 3.918 17 C -0.541 4.541 18 H 0.070 0.930 19 C 0.018 3.982 20 N -0.922 5.922 21 Si 0.977 3.023 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.261 1.261 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.421 0.579 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.020 0.980 37 H 0.023 0.977 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 -12.254 -10.936 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.310 6.310 3 C 0.014 3.986 4 H 0.133 0.867 5 C -0.224 4.224 6 C 0.299 3.701 7 O -0.417 6.417 8 N -0.300 5.300 9 C 0.048 3.952 10 C -0.149 4.149 11 C -0.126 4.126 12 C -0.136 4.136 13 C -0.155 4.155 14 C -0.237 4.237 15 S 0.094 5.906 16 C -0.066 4.066 17 C -0.580 4.580 18 H 0.088 0.912 19 C -0.184 4.184 20 N -0.561 5.561 21 Si 0.801 3.199 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.185 1.185 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.259 0.741 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.133 0.867 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.555 -12.771 -10.996 19.373 hybrid contribution 0.958 1.260 0.929 1.835 sum -8.597 -11.511 -10.067 17.543 Atomic orbital electron populations 1.23129 0.78380 1.04387 1.01572 1.87994 1.22110 1.25714 1.95174 1.21985 0.91192 0.87493 0.97953 0.86728 1.22246 1.04847 1.02329 0.92950 1.21300 0.87353 0.82895 0.78569 1.90647 1.69913 1.31049 1.50088 1.43481 1.14589 1.10619 1.61264 1.17341 0.85748 0.94385 0.97676 1.21410 0.94357 0.97305 1.01803 1.21375 0.94854 0.99238 0.97180 1.21327 1.00606 0.92148 0.99500 1.21236 0.93429 0.99955 1.00840 1.21790 0.99538 0.98455 1.03923 1.84531 1.27899 1.07672 1.70546 1.21005 0.95297 0.95056 0.95219 1.20954 1.02365 0.97658 1.36998 0.91238 1.25903 0.95537 1.02691 0.94274 1.70053 1.13938 1.35500 1.36567 0.85256 0.78237 0.77358 0.79097 1.19561 1.20269 1.18512 0.91553 0.88271 0.93034 0.92063 0.88483 0.89653 0.74083 0.83826 0.82426 0.83229 0.86747 0.96216 0.95866 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.39 -8.92 9.89 -129.99 -1.28 -10.20 16 3 C 0.07 1.50 3.13 29.85 0.09 1.59 16 4 H 0.12 1.72 7.79 -2.39 -0.02 1.70 16 5 C -0.17 -2.44 9.48 71.98 0.68 -1.75 16 6 C 0.51 14.52 6.99 87.66 0.61 15.14 16 7 O -0.54 -19.36 13.68 15.92 0.22 -19.15 16 8 N -0.65 -18.91 5.14 -303.01 -1.56 -20.47 16 9 C 0.15 5.13 6.44 38.22 0.25 5.37 16 10 C -0.13 -4.07 8.72 22.37 0.20 -3.88 16 11 C -0.11 -2.94 10.04 22.29 0.22 -2.72 16 12 C -0.12 -3.48 10.04 22.28 0.22 -3.26 16 13 C -0.13 -4.88 9.36 22.39 0.21 -4.67 16 14 C -0.12 -4.68 6.12 22.71 0.14 -4.54 16 15 S -0.15 -6.31 20.55 -56.49 -1.16 -7.47 16 16 C 0.08 4.20 4.09 71.23 0.29 4.49 16 17 C -0.54 -29.49 9.13 25.60 0.23 -29.26 16 18 H 0.07 3.68 7.71 -2.91 -0.02 3.66 16 19 C 0.02 0.95 5.46 84.65 0.46 1.41 16 20 N -0.92 -52.75 13.29 21.45 0.28 -52.47 16 21 Si 0.98 41.92 29.54 68.60 2.03 43.95 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 H 0.07 0.60 7.87 -2.39 -0.02 0.58 16 26 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.05 0.62 8.09 -2.39 -0.02 0.60 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 0.96 7.87 -2.39 -0.02 0.94 16 30 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.42 10.70 7.62 -92.71 -0.71 10.00 16 32 H 0.14 4.64 5.79 -2.91 -0.02 4.63 16 33 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.11 4.73 5.88 -2.91 -0.02 4.71 16 36 H 0.02 1.08 7.75 -2.39 -0.02 1.06 16 37 H 0.02 1.26 7.75 -2.39 -0.02 1.24 16 38 H 0.27 14.49 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -68.68 336.15 3.74 -64.95 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.37 Total: 21.43 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 4.84 Total: -20.57 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -1.27 Total: -72.94 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.07 Total: -29.35 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -1.16 Total: -7.47 kcal Total: -68.68 3.74 -64.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108200983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.629 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds