Wall clock time and date at job start Tue Mar 31 2020 07:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.47251 * 2 1 4 4 C 1.53748 * 110.42554 * 237.55414 * 2 1 3 5 5 N 1.46541 * 105.27058 * 241.28468 * 4 2 1 6 6 S 1.65593 * 124.95351 * 179.97438 * 5 4 2 7 7 O 1.42101 * 104.27899 * 206.06833 * 6 5 4 8 8 O 1.42094 * 104.28032 * 333.93255 * 6 5 4 9 9 C 1.81410 * 104.44817 * 90.00048 * 6 5 4 10 10 C 1.53001 * 109.46956 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.46766 * 179.97438 * 10 9 6 12 12 H 1.07993 * 120.00322 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99696 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00191 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99724 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46903 * 59.99710 * 15 13 11 17 17 H 1.48499 * 109.46747 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47301 * 299.99713 * 15 13 11 19 19 C 1.39580 * 110.08694 * 359.94861 * 5 4 2 20 20 C 1.39671 * 129.32076 * 179.97438 * 19 5 4 21 21 C 1.37832 * 120.27821 * 179.97438 * 20 19 5 22 22 C 1.38297 * 120.23249 * 0.08340 * 21 20 19 23 23 C 1.38226 * 119.83621 * 359.97159 * 22 21 20 24 24 C 1.38181 * 120.14865 * 359.97390 * 23 22 21 25 25 H 1.09001 * 109.46904 * 182.44739 * 1 2 3 26 26 H 1.09000 * 109.47438 * 302.44663 * 1 2 3 27 27 H 1.08996 * 109.46989 * 62.44977 * 1 2 3 28 28 H 1.09002 * 110.30202 * 122.30589 * 4 2 1 29 29 H 1.09006 * 110.29679 * 0.25791 * 4 2 1 30 30 H 1.08999 * 109.46879 * 299.99613 * 9 6 5 31 31 H 1.09000 * 109.46638 * 59.99984 * 9 6 5 32 32 H 1.08996 * 109.47650 * 300.00323 * 10 9 6 33 33 H 1.09009 * 109.46803 * 60.00178 * 10 9 6 34 34 H 0.96999 * 119.99725 * 180.02562 * 14 13 11 35 35 H 1.08000 * 119.86333 * 0.03163 * 20 19 5 36 36 H 1.08000 * 119.88311 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.08207 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.93029 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0665 -0.7730 -1.2159 5 7 2.8377 -1.8862 -0.6559 6 16 3.6325 -3.0330 -1.5476 7 8 3.6826 -4.1680 -0.6941 8 8 2.9241 -3.0728 -2.7787 9 6 5.2937 -2.3460 -1.7912 10 6 6.1355 -3.3256 -2.6113 11 6 7.5153 -2.7546 -2.8142 12 1 7.7668 -1.7898 -2.3992 13 6 8.4567 -3.4640 -3.5295 14 7 8.1506 -4.6392 -4.0344 15 14 10.1672 -2.7565 -3.7803 16 1 10.8105 -2.5368 -2.4600 17 1 10.9842 -3.7072 -4.5765 18 1 10.0670 -1.4633 -4.5033 19 6 2.8051 -1.8383 0.7387 20 6 3.3987 -2.6957 1.6678 21 6 3.2442 -2.4707 3.0188 22 6 2.4984 -1.3949 3.4648 23 6 1.9068 -0.5424 2.5515 24 6 2.0598 -0.7631 1.1960 25 1 -0.3633 -1.0268 0.0439 26 1 -0.3634 0.5513 0.8672 27 1 -0.3633 0.4753 -0.9111 28 1 2.7105 -0.1317 -1.8177 29 1 1.2404 -1.1506 -1.8185 30 1 5.2201 -1.3968 -2.3220 31 1 5.7658 -2.1848 -0.8220 32 1 6.2090 -4.2746 -2.0803 33 1 5.6634 -3.4872 -3.5805 34 1 8.8130 -5.1383 -4.5373 35 1 3.9821 -3.5380 1.3262 36 1 3.7063 -3.1376 3.7317 37 1 2.3785 -1.2211 4.5240 38 1 1.3238 0.2980 2.8981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111329356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:00 Heat of formation + Delta-G solvation = -50.285835 kcal Electronic energy + Delta-G solvation = -21741.221105 eV Core-core repulsion = 18482.348311 eV Total energy + Delta-G solvation = -3258.872793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60582 -36.98402 -36.48022 -35.64202 -33.96545 -33.47898 -31.23853 -29.92443 -29.50195 -26.41178 -25.64904 -23.13387 -22.33018 -21.49793 -20.72390 -18.98574 -17.70470 -16.71942 -16.39282 -16.07265 -15.77102 -15.29716 -15.01884 -14.67281 -14.50304 -13.79185 -13.63978 -13.47801 -13.16207 -12.66183 -12.57784 -12.56107 -12.34629 -11.91674 -11.82940 -11.78025 -11.67135 -11.29320 -11.18377 -11.10661 -11.04518 -10.64498 -10.60467 -10.45152 -10.39623 -9.77762 -9.26965 -8.81290 -8.54180 -7.86534 -6.16445 -4.22634 0.48191 1.36942 1.44314 2.74500 3.25217 3.30078 3.31936 3.74323 4.12215 4.16988 4.20370 4.34342 4.55641 4.81969 4.88411 5.02295 5.08903 5.18593 5.23438 5.36430 5.43370 5.44863 5.50506 5.61584 5.65015 5.69066 5.74302 5.91354 6.03781 6.17430 6.31959 6.37914 6.45321 6.57506 6.65123 7.05672 7.22052 7.27736 7.76030 8.11483 8.80274 9.42417 10.94499 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.004265 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.181650 B = 6564.104337 C = 6941.104933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 H 0.094 0.906 4 C 0.115 3.885 5 N -0.943 5.943 6 S 2.585 3.415 7 O -0.949 6.949 8 O -0.952 6.952 9 C -0.581 4.581 10 C 0.029 3.971 11 C -0.522 4.522 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.901 3.099 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.173 3.827 20 C -0.153 4.153 21 C -0.086 4.086 22 C -0.152 4.152 23 C -0.077 4.077 24 C -0.136 4.136 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.266 0.734 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 10.285 11.954 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 H 0.112 0.888 4 C -0.009 4.009 5 N -0.764 5.764 6 S 2.686 3.314 7 O -0.939 6.939 8 O -0.942 6.942 9 C -0.716 4.716 10 C -0.010 4.010 11 C -0.562 4.562 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.075 3.925 20 C -0.175 4.175 21 C -0.104 4.104 22 C -0.172 4.172 23 C -0.095 4.095 24 C -0.141 4.141 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.884 9.236 11.366 20.181 hybrid contribution 1.426 0.787 -0.145 1.635 sum -12.458 10.024 11.221 19.535 Atomic orbital electron populations 1.21816 0.93271 1.02527 1.02136 1.20694 0.96564 0.99157 0.90795 0.88751 1.22012 0.95875 0.86889 0.96160 1.56664 1.63009 1.43916 1.12784 1.06134 0.78012 0.73856 0.73352 1.93535 1.87450 1.46687 1.66238 1.93556 1.71298 1.85534 1.43827 1.30450 1.17929 1.12478 1.10700 1.18993 0.95077 0.92651 0.94284 1.20936 0.95416 1.04794 1.35010 0.92017 1.25063 0.99199 0.94856 0.95244 1.69941 1.35244 1.12434 1.35159 0.86506 0.83390 0.78873 0.78389 1.20019 1.21005 1.20037 1.18086 0.96482 0.95496 0.82418 1.21117 1.03342 1.00678 0.92334 1.20873 0.97773 0.97261 0.94518 1.20962 1.00559 0.96428 0.99236 1.20318 0.99212 0.99237 0.90759 1.20135 1.02188 0.97563 0.94216 0.92212 0.92045 0.91872 0.89935 0.89377 0.85984 0.85866 0.94674 0.94749 0.92390 0.83643 0.85411 0.85900 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.05 37.16 0.34 -0.83 16 2 C -0.05 -0.53 3.64 -91.02 -0.33 -0.86 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.11 1.39 6.73 -3.63 -0.02 1.37 16 5 N -0.94 -14.42 3.40 -58.11 -0.20 -14.62 16 6 S 2.59 48.24 5.56 -107.50 -0.60 47.64 16 7 O -0.95 -19.73 15.25 -57.54 -0.88 -20.61 16 8 O -0.95 -19.89 17.56 -57.54 -1.01 -20.90 16 9 C -0.58 -11.30 6.12 37.16 0.23 -11.07 16 10 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 11 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 15 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.17 2.57 6.59 -83.66 -0.55 2.02 16 20 C -0.15 -2.28 9.37 -39.20 -0.37 -2.65 16 21 C -0.09 -1.03 10.02 -39.71 -0.40 -1.42 16 22 C -0.15 -1.59 10.06 -39.56 -0.40 -1.99 16 23 C -0.08 -0.81 10.04 -39.61 -0.40 -1.20 16 24 C -0.14 -1.67 5.56 -104.15 -0.58 -2.25 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 30 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 31 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.92 8.14 -51.92 -0.42 0.49 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.15 2.35 6.11 -52.49 -0.32 2.03 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -33.78 329.96 -10.36 -44.15 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.34 Total: 0.26 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -3.03 Total: -31.40 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.54 Total: -40.16 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -1.89 Total: -41.51 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 48.24 SS G_CDS: -0.60 Total: 47.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.78 -10.36 -44.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.139 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds