Wall clock time and date at job start Tue Mar 31 2020 07:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.47251 * 2 1 4 4 C 1.53748 * 110.42554 * 237.55414 * 2 1 3 5 5 N 1.46541 * 105.27058 * 241.28468 * 4 2 1 6 6 S 1.65593 * 124.95351 * 179.97438 * 5 4 2 7 7 O 1.42101 * 104.27899 * 206.06833 * 6 5 4 8 8 O 1.42094 * 104.28032 * 333.93255 * 6 5 4 9 9 C 1.81410 * 104.44817 * 90.00048 * 6 5 4 10 10 C 1.53001 * 109.46956 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.46766 * 179.97438 * 10 9 6 12 12 H 1.07993 * 120.00322 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99696 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00191 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99724 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46903 * 59.99710 * 15 13 11 17 17 H 1.48499 * 109.46747 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47301 * 299.99713 * 15 13 11 19 19 C 1.39580 * 110.08694 * 359.94861 * 5 4 2 20 20 C 1.39671 * 129.32076 * 179.97438 * 19 5 4 21 21 C 1.37832 * 120.27821 * 179.97438 * 20 19 5 22 22 C 1.38297 * 120.23249 * 0.08340 * 21 20 19 23 23 C 1.38226 * 119.83621 * 359.97159 * 22 21 20 24 24 C 1.38181 * 120.14865 * 359.97390 * 23 22 21 25 25 H 1.09001 * 109.46904 * 182.44739 * 1 2 3 26 26 H 1.09000 * 109.47438 * 302.44663 * 1 2 3 27 27 H 1.08996 * 109.46989 * 62.44977 * 1 2 3 28 28 H 1.09002 * 110.30202 * 122.30589 * 4 2 1 29 29 H 1.09006 * 110.29679 * 0.25791 * 4 2 1 30 30 H 1.08999 * 109.46879 * 299.99613 * 9 6 5 31 31 H 1.09000 * 109.46638 * 59.99984 * 9 6 5 32 32 H 1.08996 * 109.47650 * 300.00323 * 10 9 6 33 33 H 1.09009 * 109.46803 * 60.00178 * 10 9 6 34 34 H 0.96999 * 119.99725 * 180.02562 * 14 13 11 35 35 H 1.08000 * 119.86333 * 0.03163 * 20 19 5 36 36 H 1.08000 * 119.88311 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.08207 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.93029 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0665 -0.7730 -1.2159 5 7 2.8377 -1.8862 -0.6559 6 16 3.6325 -3.0330 -1.5476 7 8 3.6826 -4.1680 -0.6941 8 8 2.9241 -3.0728 -2.7787 9 6 5.2937 -2.3460 -1.7912 10 6 6.1355 -3.3256 -2.6113 11 6 7.5153 -2.7546 -2.8142 12 1 7.7668 -1.7898 -2.3992 13 6 8.4567 -3.4640 -3.5295 14 7 8.1506 -4.6392 -4.0344 15 14 10.1672 -2.7565 -3.7803 16 1 10.8105 -2.5368 -2.4600 17 1 10.9842 -3.7072 -4.5765 18 1 10.0670 -1.4633 -4.5033 19 6 2.8051 -1.8383 0.7387 20 6 3.3987 -2.6957 1.6678 21 6 3.2442 -2.4707 3.0188 22 6 2.4984 -1.3949 3.4648 23 6 1.9068 -0.5424 2.5515 24 6 2.0598 -0.7631 1.1960 25 1 -0.3633 -1.0268 0.0439 26 1 -0.3634 0.5513 0.8672 27 1 -0.3633 0.4753 -0.9111 28 1 2.7105 -0.1317 -1.8177 29 1 1.2404 -1.1506 -1.8185 30 1 5.2201 -1.3968 -2.3220 31 1 5.7658 -2.1848 -0.8220 32 1 6.2090 -4.2746 -2.0803 33 1 5.6634 -3.4872 -3.5805 34 1 8.8130 -5.1383 -4.5373 35 1 3.9821 -3.5380 1.3262 36 1 3.7063 -3.1376 3.7317 37 1 2.3785 -1.2211 4.5240 38 1 1.3238 0.2980 2.8981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111329356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:00 Heat of formation + Delta-G solvation = -72.100399 kcal Electronic energy + Delta-G solvation = -21742.167055 eV Core-core repulsion = 18482.348311 eV Total energy + Delta-G solvation = -3259.818744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55225 -38.49313 -37.50052 -37.24980 -35.97604 -34.39616 -33.22324 -30.79432 -30.45145 -27.71852 -27.19780 -24.15695 -23.69571 -22.97035 -21.59815 -20.32293 -19.23639 -18.46095 -17.59926 -17.44870 -16.84170 -16.60502 -16.55772 -16.17082 -15.62299 -15.30380 -14.72761 -14.53757 -14.37919 -13.97997 -13.82461 -13.75623 -13.58361 -13.41309 -13.22796 -13.15683 -12.95914 -12.88282 -12.74187 -12.32653 -12.25673 -12.14663 -12.01919 -11.82296 -11.56958 -11.47808 -11.10220 -10.67723 -9.72253 -8.88385 -8.29629 -6.44703 -1.02290 0.45900 0.48718 1.39288 1.41324 1.42903 1.51365 2.35358 2.58293 2.86057 2.88822 3.03699 3.22824 3.57655 3.85275 3.92745 3.99140 4.06346 4.18198 4.33393 4.44746 4.56473 4.60730 4.62921 4.70182 4.74992 4.85472 4.98525 5.15680 5.16795 5.17437 5.28234 5.37259 5.40498 5.53673 5.62964 5.64367 5.69700 5.99827 6.14640 6.67781 7.25797 8.82424 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.004265 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.181650 B = 6564.104337 C = 6941.104933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 H 0.122 0.878 4 C 0.097 3.903 5 N -0.941 5.941 6 S 2.611 3.389 7 O -0.978 6.978 8 O -0.979 6.979 9 C -0.578 4.578 10 C 0.023 3.977 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.976 3.024 16 H -0.264 1.264 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.135 3.865 20 C -0.184 4.184 21 C -0.094 4.094 22 C -0.142 4.142 23 C -0.073 4.073 24 C -0.135 4.135 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.008 0.992 33 H 0.010 0.990 34 H 0.269 0.731 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 13.592 13.831 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 H 0.139 0.861 4 C -0.026 4.026 5 N -0.765 5.765 6 S 2.712 3.288 7 O -0.968 6.968 8 O -0.969 6.969 9 C -0.711 4.711 10 C -0.016 4.016 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.200 4.200 14 N -0.572 5.572 15 Si 0.799 3.201 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.186 1.186 19 C 0.039 3.961 20 C -0.206 4.206 21 C -0.112 4.112 22 C -0.161 4.161 23 C -0.091 4.091 24 C -0.139 4.139 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.446 12.550 13.248 23.275 hybrid contribution 1.498 -0.220 -0.612 1.633 sum -12.948 12.330 12.636 21.895 Atomic orbital electron populations 1.21820 0.91808 1.01914 1.03914 1.20795 0.97627 0.99627 0.88477 0.86062 1.22452 0.96075 0.86437 0.97638 1.56189 1.62785 1.44307 1.13246 1.05016 0.77430 0.73711 0.72656 1.93496 1.87717 1.48845 1.66774 1.93509 1.71691 1.86201 1.45516 1.30316 1.18237 1.11909 1.10678 1.18832 0.95852 0.93155 0.93768 1.21434 0.96384 1.05404 1.34915 0.90671 1.26118 1.03972 0.95100 0.94790 1.70090 1.36898 1.14082 1.36147 0.85342 0.77633 0.78378 0.78785 1.18825 1.20765 1.18639 1.18370 0.98668 0.97265 0.81804 1.21160 1.04650 1.00754 0.94045 1.21153 0.98161 0.98382 0.93515 1.21406 0.98628 0.94980 1.01107 1.20778 0.98610 0.99928 0.89815 1.20499 1.01158 0.96607 0.95679 0.94027 0.90052 0.90339 0.88116 0.89495 0.83649 0.84401 0.97368 0.97191 0.92244 0.86393 0.83766 0.82456 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 71.98 0.65 -1.19 16 2 C -0.05 -0.79 3.64 -11.05 -0.04 -0.83 16 3 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 4 C 0.10 2.22 6.73 86.62 0.58 2.81 16 5 N -0.94 -28.89 3.40 -337.77 -1.15 -30.04 16 6 S 2.61 101.79 5.56 -56.49 -0.31 101.48 16 7 O -0.98 -43.41 15.25 -127.65 -1.95 -45.36 16 8 O -0.98 -42.56 17.56 -127.65 -2.24 -44.81 16 9 C -0.58 -23.09 6.12 71.98 0.44 -22.65 16 10 C 0.02 1.23 4.98 29.85 0.15 1.38 16 11 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 12 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 13 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 14 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 15 Si 0.98 43.29 29.54 68.60 2.03 45.31 16 16 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 19 C 0.14 3.98 6.59 38.34 0.25 4.23 16 20 C -0.18 -5.60 9.37 22.52 0.21 -5.39 16 21 C -0.09 -2.13 10.02 22.19 0.22 -1.91 16 22 C -0.14 -2.47 10.06 22.28 0.22 -2.24 16 23 C -0.07 -1.24 10.04 22.25 0.22 -1.02 16 24 C -0.13 -2.97 5.56 -19.56 -0.11 -3.08 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 1.97 7.70 -2.38 -0.02 1.95 16 30 H 0.15 5.02 8.14 -2.39 -0.02 5.00 16 31 H 0.14 5.03 8.14 -2.39 -0.02 5.01 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.12 4.14 6.11 -2.91 -0.02 4.12 16 36 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -76.39 329.96 1.21 -75.18 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.05 Total: 14.50 kcal Atomic # 6 Polarization: -63.14 SS G_CDS: 3.50 Total: -59.64 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -0.86 Total: -86.66 kcal Atomic # 8 Polarization: -85.98 SS G_CDS: -4.19 Total: -90.17 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 101.79 SS G_CDS: -0.31 Total: 101.48 kcal Total: -76.39 1.21 -75.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.079 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds