Wall clock time and date at job start Tue Mar 31 2020 07:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.47879 * 2 1 4 4 C 1.53754 * 110.10105 * 122.63053 * 2 1 3 5 5 N 1.46538 * 105.18677 * 118.96823 * 4 2 1 6 6 S 1.65591 * 124.96138 * 179.72688 * 5 4 2 7 7 O 1.42104 * 104.27554 * 26.08600 * 6 5 4 8 8 O 1.42095 * 104.28089 * 153.94010 * 6 5 4 9 9 C 1.81401 * 104.45210 * 270.01767 * 6 5 4 10 10 C 1.52998 * 109.47131 * 180.02562 * 9 6 5 11 11 C 1.50705 * 109.46814 * 179.97438 * 10 9 6 12 12 H 1.07998 * 120.00121 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99601 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99382 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00192 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46841 * 90.00362 * 15 13 11 17 17 H 1.48504 * 109.47134 * 209.99965 * 15 13 11 18 18 H 1.48496 * 109.47458 * 330.00154 * 15 13 11 19 19 C 1.39584 * 110.08522 * 359.75877 * 5 4 2 20 20 C 1.39675 * 129.31928 * 179.97438 * 19 5 4 21 21 C 1.37823 * 120.28000 * 180.02562 * 20 19 5 22 22 C 1.38304 * 120.23249 * 0.02562 * 21 20 19 23 23 C 1.38238 * 119.83143 * 359.97438 * 22 21 20 24 24 C 1.38161 * 120.15295 * 0.03844 * 23 22 21 25 25 H 1.08991 * 109.47540 * 180.98631 * 1 2 3 26 26 H 1.09004 * 109.46690 * 300.99176 * 1 2 3 27 27 H 1.09000 * 109.46750 * 60.98318 * 1 2 3 28 28 H 1.08999 * 110.50237 * 359.93946 * 4 2 1 29 29 H 1.09000 * 110.10206 * 237.79057 * 4 2 1 30 30 H 1.09001 * 109.46603 * 299.99753 * 9 6 5 31 31 H 1.08999 * 109.47234 * 59.99411 * 9 6 5 32 32 H 1.09000 * 109.46583 * 299.99251 * 10 9 6 33 33 H 1.08999 * 109.47627 * 59.99549 * 10 9 6 34 34 H 0.97001 * 120.00030 * 179.97438 * 14 13 11 35 35 H 1.07994 * 119.85522 * 0.02562 * 20 19 5 36 36 H 1.08004 * 119.88740 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.08314 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.91775 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9113 1.0211 0.0000 4 6 2.0584 -0.7786 1.2160 5 7 2.8335 -1.8880 0.6542 6 16 3.6292 -3.0359 1.5438 7 8 2.9178 -3.0817 2.7731 8 8 3.6840 -4.1678 0.6866 9 6 5.2880 -2.3455 1.7936 10 6 6.1303 -3.3258 2.6124 11 6 7.5086 -2.7525 2.8194 12 1 7.7588 -1.7858 2.4078 13 6 8.4501 -3.4620 3.5343 14 7 9.6530 -2.9619 3.7145 15 14 8.0171 -5.1336 4.2469 16 1 8.3352 -6.1919 3.2549 17 1 8.8043 -5.3629 5.4850 18 1 6.5677 -5.1748 4.5671 19 6 2.8039 -1.8356 -0.7404 20 6 3.4026 -2.6881 -1.6709 21 6 3.2504 -2.4592 -3.0215 22 6 2.5040 -1.3830 -3.4657 23 6 1.9084 -0.5348 -2.5509 24 6 2.0582 -0.7598 -1.1960 25 1 -0.3634 -1.0274 0.0177 26 1 -0.3633 0.5292 0.8810 27 1 -0.3633 0.4985 -0.8987 28 1 1.2308 -1.1602 1.8140 29 1 2.6995 -0.1378 1.8214 30 1 5.7619 -2.1798 0.8262 31 1 5.2107 -1.3983 2.3274 32 1 5.6564 -3.4919 3.5798 33 1 6.2076 -4.2728 2.0782 34 1 10.3153 -3.4609 4.2178 35 1 3.9870 -3.5300 -1.3306 36 1 3.7158 -3.1226 -3.7355 37 1 2.3867 -1.2057 -4.5246 38 1 1.3248 0.3058 -2.8963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111329357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:03 Heat of formation + Delta-G solvation = -45.806510 kcal Electronic energy + Delta-G solvation = -21802.706941 eV Core-core repulsion = 18544.028386 eV Total energy + Delta-G solvation = -3258.678555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66443 -37.09750 -36.55130 -35.78354 -34.03272 -33.54077 -31.55580 -29.96289 -29.55222 -26.48478 -26.00312 -23.17529 -22.33178 -21.21709 -20.74581 -19.08773 -17.85853 -17.07780 -16.46772 -16.20142 -15.82015 -15.40786 -15.10668 -14.71308 -14.31057 -13.88936 -13.74064 -13.59765 -13.20446 -12.86002 -12.70881 -12.63325 -12.39242 -11.99232 -11.94202 -11.91959 -11.79756 -11.33688 -11.32589 -11.30974 -11.24352 -10.68701 -10.60711 -10.50791 -10.17633 -9.71298 -9.42854 -8.84937 -8.70628 -7.91750 -6.20674 -4.22674 0.35213 1.33231 1.40071 2.61508 3.23279 3.30817 3.34282 3.69622 4.00562 4.08679 4.14026 4.31780 4.48904 4.78318 4.83328 4.98146 5.05619 5.10230 5.19248 5.31978 5.36019 5.39424 5.41718 5.49660 5.60128 5.63534 5.69152 5.87360 6.00304 6.12330 6.17343 6.27395 6.40750 6.53104 6.60184 6.72461 6.85127 7.01371 7.48539 8.31664 8.80056 9.38323 10.91618 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.004485 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.514036 B = 6242.088138 C = 6631.391924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 H 0.096 0.904 4 C 0.115 3.885 5 N -0.942 5.942 6 S 2.584 3.416 7 O -0.951 6.951 8 O -0.948 6.948 9 C -0.575 4.575 10 C -0.006 4.006 11 C -0.521 4.521 12 H 0.079 0.921 13 C 0.073 3.927 14 N -0.894 5.894 15 Si 0.869 3.131 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.262 1.262 19 C 0.171 3.829 20 C -0.153 4.153 21 C -0.086 4.086 22 C -0.151 4.151 23 C -0.076 4.076 24 C -0.135 4.135 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.342 6.572 -11.413 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 H 0.114 0.886 4 C -0.009 4.009 5 N -0.763 5.763 6 S 2.685 3.315 7 O -0.942 6.942 8 O -0.939 6.939 9 C -0.709 4.709 10 C -0.046 4.046 11 C -0.560 4.560 12 H 0.097 0.903 13 C -0.130 4.130 14 N -0.531 5.531 15 Si 0.695 3.305 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.187 1.187 19 C 0.074 3.926 20 C -0.174 4.174 21 C -0.104 4.104 22 C -0.170 4.170 23 C -0.095 4.095 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.555 5.646 -10.850 21.396 hybrid contribution 0.456 -0.344 0.365 0.678 sum -17.099 5.303 -10.486 20.747 Atomic orbital electron populations 1.21827 0.93269 1.02497 1.02193 1.20664 0.96626 0.99213 0.90751 0.88609 1.22037 0.95831 0.86861 0.96188 1.56561 1.62803 1.44127 1.12816 1.06119 0.78025 0.73916 0.73453 1.93565 1.71070 1.85524 1.44000 1.93542 1.87439 1.46909 1.66007 1.30292 1.17580 1.12195 1.10826 1.19438 0.97103 0.93459 0.94551 1.20812 0.93245 1.06430 1.35496 0.90334 1.24971 0.94739 0.97918 0.95343 1.69876 1.04084 1.38598 1.40584 0.86935 0.79491 0.84666 0.79436 1.19579 1.20638 1.18658 1.18082 0.96638 0.95624 0.82305 1.21100 1.03288 1.00713 0.92344 1.20875 0.97760 0.97260 0.94518 1.20978 1.00402 0.96381 0.99277 1.20326 0.99188 0.99252 0.90741 1.20083 1.02130 0.97471 0.94245 0.92232 0.91868 0.92019 0.89302 0.89859 0.85278 0.85367 0.94844 0.95224 0.92292 0.83699 0.85377 0.85843 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.03 37.16 0.34 -0.79 16 2 C -0.05 -0.52 3.65 -91.13 -0.33 -0.85 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.12 1.34 6.72 -3.63 -0.02 1.31 16 5 N -0.94 -13.81 3.40 -58.11 -0.20 -14.00 16 6 S 2.58 45.60 5.56 -107.50 -0.60 45.00 16 7 O -0.95 -18.73 17.56 -57.54 -1.01 -19.74 16 8 O -0.95 -18.56 15.25 -57.54 -0.88 -19.43 16 9 C -0.58 -10.67 6.12 37.16 0.23 -10.44 16 10 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 11 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 16 12 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 15 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 19 C 0.17 2.46 6.59 -83.66 -0.55 1.90 16 20 C -0.15 -2.20 9.37 -39.20 -0.37 -2.56 16 21 C -0.09 -0.99 10.02 -39.71 -0.40 -1.39 16 22 C -0.15 -1.53 10.06 -39.56 -0.40 -1.93 16 23 C -0.08 -0.78 10.03 -39.61 -0.40 -1.18 16 24 C -0.13 -1.60 5.55 -104.26 -0.58 -2.18 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.98 7.70 -51.93 -0.40 0.58 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.13 2.23 8.14 -51.92 -0.42 1.80 16 31 H 0.13 2.15 8.14 -51.92 -0.42 1.72 16 32 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 33 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.15 2.24 6.11 -52.49 -0.32 1.92 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -33.75 326.31 -9.99 -43.74 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.30 Total: 0.13 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -3.03 Total: -31.16 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.58 Total: -40.07 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.89 Total: -39.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 45.60 SS G_CDS: -0.60 Total: 45.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.75 -9.99 -43.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.068 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds