Wall clock time and date at job start Tue Mar 31 2020 07:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.47879 * 2 1 4 4 C 1.53754 * 110.10105 * 122.63053 * 2 1 3 5 5 N 1.46538 * 105.18677 * 118.96823 * 4 2 1 6 6 S 1.65591 * 124.96138 * 179.72688 * 5 4 2 7 7 O 1.42104 * 104.27554 * 26.08600 * 6 5 4 8 8 O 1.42095 * 104.28089 * 153.94010 * 6 5 4 9 9 C 1.81401 * 104.45210 * 270.01767 * 6 5 4 10 10 C 1.52998 * 109.47131 * 180.02562 * 9 6 5 11 11 C 1.50705 * 109.46814 * 179.97438 * 10 9 6 12 12 H 1.07998 * 120.00121 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99601 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99382 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00192 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46841 * 90.00362 * 15 13 11 17 17 H 1.48504 * 109.47134 * 209.99965 * 15 13 11 18 18 H 1.48496 * 109.47458 * 330.00154 * 15 13 11 19 19 C 1.39584 * 110.08522 * 359.75877 * 5 4 2 20 20 C 1.39675 * 129.31928 * 179.97438 * 19 5 4 21 21 C 1.37823 * 120.28000 * 180.02562 * 20 19 5 22 22 C 1.38304 * 120.23249 * 0.02562 * 21 20 19 23 23 C 1.38238 * 119.83143 * 359.97438 * 22 21 20 24 24 C 1.38161 * 120.15295 * 0.03844 * 23 22 21 25 25 H 1.08991 * 109.47540 * 180.98631 * 1 2 3 26 26 H 1.09004 * 109.46690 * 300.99176 * 1 2 3 27 27 H 1.09000 * 109.46750 * 60.98318 * 1 2 3 28 28 H 1.08999 * 110.50237 * 359.93946 * 4 2 1 29 29 H 1.09000 * 110.10206 * 237.79057 * 4 2 1 30 30 H 1.09001 * 109.46603 * 299.99753 * 9 6 5 31 31 H 1.08999 * 109.47234 * 59.99411 * 9 6 5 32 32 H 1.09000 * 109.46583 * 299.99251 * 10 9 6 33 33 H 1.08999 * 109.47627 * 59.99549 * 10 9 6 34 34 H 0.97001 * 120.00030 * 179.97438 * 14 13 11 35 35 H 1.07994 * 119.85522 * 0.02562 * 20 19 5 36 36 H 1.08004 * 119.88740 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.08314 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.91775 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9113 1.0211 0.0000 4 6 2.0584 -0.7786 1.2160 5 7 2.8335 -1.8880 0.6542 6 16 3.6292 -3.0359 1.5438 7 8 2.9178 -3.0817 2.7731 8 8 3.6840 -4.1678 0.6866 9 6 5.2880 -2.3455 1.7936 10 6 6.1303 -3.3258 2.6124 11 6 7.5086 -2.7525 2.8194 12 1 7.7588 -1.7858 2.4078 13 6 8.4501 -3.4620 3.5343 14 7 9.6530 -2.9619 3.7145 15 14 8.0171 -5.1336 4.2469 16 1 8.3352 -6.1919 3.2549 17 1 8.8043 -5.3629 5.4850 18 1 6.5677 -5.1748 4.5671 19 6 2.8039 -1.8356 -0.7404 20 6 3.4026 -2.6881 -1.6709 21 6 3.2504 -2.4592 -3.0215 22 6 2.5040 -1.3830 -3.4657 23 6 1.9084 -0.5348 -2.5509 24 6 2.0582 -0.7598 -1.1960 25 1 -0.3634 -1.0274 0.0177 26 1 -0.3633 0.5292 0.8810 27 1 -0.3633 0.4985 -0.8987 28 1 1.2308 -1.1602 1.8140 29 1 2.6995 -0.1378 1.8214 30 1 5.7619 -2.1798 0.8262 31 1 5.2107 -1.3983 2.3274 32 1 5.6564 -3.4919 3.5798 33 1 6.2076 -4.2728 2.0782 34 1 10.3153 -3.4609 4.2178 35 1 3.9870 -3.5300 -1.3306 36 1 3.7158 -3.1226 -3.7355 37 1 2.3867 -1.2057 -4.5246 38 1 1.3248 0.3058 -2.8963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111329357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:02 Heat of formation + Delta-G solvation = -67.871082 kcal Electronic energy + Delta-G solvation = -21803.663732 eV Core-core repulsion = 18544.028386 eV Total energy + Delta-G solvation = -3259.635347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56811 -38.51272 -37.50867 -37.27801 -35.98053 -34.41606 -33.56073 -30.79788 -30.46051 -28.01909 -27.20389 -24.11199 -23.47838 -22.84839 -21.60134 -20.36126 -19.48283 -18.68315 -17.62469 -17.46581 -16.83706 -16.62571 -16.45757 -16.17388 -15.62061 -15.42578 -14.86647 -14.72777 -14.40909 -13.98907 -13.88122 -13.77011 -13.59685 -13.43388 -13.24267 -13.16360 -13.14781 -13.08236 -12.74596 -12.31934 -12.18674 -12.04908 -11.98421 -11.77479 -11.59284 -11.52025 -11.18872 -10.88178 -9.72503 -8.88822 -8.40147 -6.46930 -1.05541 0.45622 0.48190 1.29854 1.31482 1.35741 1.41468 2.26389 2.53324 2.83807 2.88077 2.93484 3.20832 3.57600 3.76479 3.88754 3.97037 4.05762 4.17547 4.33149 4.43510 4.45394 4.57468 4.60508 4.69193 4.74626 4.84764 4.95804 4.97869 4.99293 5.15465 5.27530 5.36033 5.39772 5.41342 5.52771 5.63864 5.69135 6.11875 6.13976 6.58648 7.17580 8.75461 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.004485 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.514036 B = 6242.088138 C = 6631.391924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 H 0.119 0.881 4 C 0.098 3.902 5 N -0.941 5.941 6 S 2.614 3.386 7 O -0.972 6.972 8 O -0.972 6.972 9 C -0.580 4.580 10 C -0.015 4.015 11 C -0.530 4.530 12 H 0.048 0.952 13 C 0.017 3.983 14 N -0.938 5.938 15 Si 0.925 3.075 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.249 1.249 19 C 0.135 3.865 20 C -0.183 4.183 21 C -0.094 4.094 22 C -0.143 4.143 23 C -0.074 4.074 24 C -0.135 4.135 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.271 0.729 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 7.515 -12.703 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 H 0.137 0.863 4 C -0.025 4.025 5 N -0.765 5.765 6 S 2.714 3.286 7 O -0.963 6.963 8 O -0.962 6.962 9 C -0.712 4.712 10 C -0.054 4.054 11 C -0.569 4.569 12 H 0.067 0.933 13 C -0.182 4.182 14 N -0.577 5.577 15 Si 0.747 3.253 16 H -0.185 1.185 17 H -0.196 1.196 18 H -0.173 1.173 19 C 0.039 3.961 20 C -0.205 4.205 21 C -0.113 4.113 22 C -0.162 4.162 23 C -0.093 4.093 24 C -0.140 4.140 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.855 6.592 -12.142 24.189 hybrid contribution 1.133 -0.513 0.621 1.390 sum -18.722 6.078 -11.520 22.807 Atomic orbital electron populations 1.21824 0.91775 1.01970 1.03876 1.20761 0.97733 0.99580 0.88629 0.86286 1.22454 0.96065 0.86480 0.97533 1.56166 1.62542 1.44597 1.13210 1.04950 0.77157 0.73671 0.72832 1.93529 1.71209 1.86087 1.45452 1.93511 1.87578 1.48663 1.66446 1.30262 1.18492 1.11847 1.10617 1.19383 0.95715 0.94649 0.95637 1.21108 0.95482 1.05459 1.34852 0.93322 1.25853 0.94585 1.01914 0.95886 1.70001 1.05306 1.40485 1.41931 0.86032 0.80040 0.80042 0.79191 1.18453 1.19620 1.17310 1.18361 0.98660 0.97282 0.81834 1.21168 1.04494 1.00871 0.93928 1.21162 0.98123 0.98320 0.93659 1.21410 0.98628 0.95056 1.01069 1.20771 0.98676 0.99926 0.89900 1.20449 1.01232 0.96632 0.95648 0.93837 0.90267 0.90308 0.89119 0.88260 0.84577 0.83870 0.94603 0.94902 0.91971 0.86023 0.83714 0.82565 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.03 71.98 0.65 -1.10 16 2 C -0.05 -0.79 3.65 -11.12 -0.04 -0.83 16 3 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.10 2.12 6.72 86.63 0.58 2.70 16 5 N -0.94 -27.17 3.40 -337.76 -1.15 -28.32 16 6 S 2.61 92.81 5.56 -56.49 -0.31 92.50 16 7 O -0.97 -38.14 17.56 -127.65 -2.24 -40.38 16 8 O -0.97 -38.86 15.25 -127.65 -1.95 -40.81 16 9 C -0.58 -21.79 6.12 71.98 0.44 -21.35 16 10 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 11 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 12 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 13 C 0.02 0.96 5.47 84.65 0.46 1.43 16 14 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 15 Si 0.92 43.78 27.47 68.60 1.88 45.67 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 19 C 0.14 3.79 6.59 38.34 0.25 4.05 16 20 C -0.18 -5.29 9.37 22.52 0.21 -5.08 16 21 C -0.09 -2.07 10.02 22.19 0.22 -1.85 16 22 C -0.14 -2.42 10.06 22.29 0.22 -2.20 16 23 C -0.07 -1.25 10.03 22.25 0.22 -1.02 16 24 C -0.13 -2.89 5.55 -19.63 -0.11 -3.00 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.90 7.70 -2.39 -0.02 1.88 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 31 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 32 H 0.04 1.67 7.20 -2.39 -0.02 1.66 16 33 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.12 3.98 6.11 -2.91 -0.02 3.96 16 36 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -74.57 326.31 1.01 -73.56 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.99 Total: 13.96 kcal Atomic # 6 Polarization: -62.27 SS G_CDS: 3.49 Total: -58.79 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -0.85 Total: -85.70 kcal Atomic # 8 Polarization: -77.00 SS G_CDS: -4.19 Total: -81.19 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Atomic # 16 Polarization: 92.81 SS G_CDS: -0.31 Total: 92.50 kcal Total: -74.57 1.01 -73.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.689 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds