Wall clock time and date at job start Tue Mar 31 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00223 * 2 1 4 4 H 1.08998 * 109.46999 * 55.00439 * 3 2 1 5 5 C 1.52996 * 109.46942 * 294.99947 * 3 2 1 6 6 C 1.50702 * 109.46692 * 175.00089 * 3 2 1 7 7 O 1.21283 * 120.00069 * 25.00392 * 6 3 2 8 8 N 1.34777 * 119.99514 * 204.99760 * 6 3 2 9 9 C 1.46502 * 119.99741 * 180.02562 * 8 6 3 10 10 C 1.50707 * 109.47070 * 180.02562 * 9 8 6 11 11 C 1.38323 * 119.96257 * 269.72269 * 10 9 8 12 12 C 1.38276 * 120.13434 * 179.76368 * 11 10 9 13 13 C 1.38131 * 120.07028 * 0.51358 * 12 11 10 14 14 C 1.38856 * 119.92924 * 359.74517 * 13 12 11 15 15 O 1.35746 * 120.06637 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00345 * 354.48256 * 15 14 13 17 17 H 1.08004 * 119.99631 * 5.05922 * 16 15 14 18 18 C 1.38657 * 120.00082 * 185.06182 * 16 15 14 19 19 N 1.31556 * 120.00049 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99754 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46962 * 90.00125 * 20 18 16 22 22 H 1.48505 * 109.47080 * 209.99990 * 20 18 16 23 23 H 1.48500 * 109.47116 * 330.00254 * 20 18 16 24 24 C 1.38081 * 119.96393 * 89.99832 * 10 9 8 25 25 H 1.08993 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46881 * 299.99949 * 1 2 3 27 27 H 1.08997 * 109.46855 * 59.99536 * 1 2 3 28 28 H 1.08998 * 109.47675 * 300.00077 * 5 3 2 29 29 H 1.08996 * 109.47166 * 60.00503 * 5 3 2 30 30 H 1.08999 * 109.46736 * 180.02562 * 5 3 2 31 31 H 0.97000 * 120.00316 * 0.02562 * 8 6 3 32 32 H 1.09001 * 109.47008 * 299.99947 * 9 8 6 33 33 H 1.08996 * 109.47315 * 60.00412 * 9 8 6 34 34 H 1.08001 * 119.93232 * 359.97438 * 11 10 9 35 35 H 1.08000 * 119.96560 * 180.25402 * 12 11 10 36 36 H 1.07995 * 120.03104 * 179.71872 * 13 12 11 37 37 H 0.97001 * 119.99641 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.03516 * 359.95852 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4015 -1.3073 6 6 3.7143 1.9384 0.1238 7 8 4.4584 1.0529 -0.2410 8 7 4.2218 3.0754 0.6398 9 6 5.6724 3.2418 0.7597 10 6 5.9753 4.5894 1.3624 11 6 6.1551 5.6885 0.5420 12 6 6.4283 6.9276 1.0915 13 6 6.5331 7.0694 2.4615 14 6 6.3584 5.9669 3.2874 15 8 6.4612 6.1030 4.6341 16 6 6.8469 7.3079 5.1000 17 1 6.9791 8.1339 4.4168 18 6 7.0739 7.4867 6.4561 19 7 6.9134 6.4804 7.2882 20 14 7.6089 9.1561 7.1014 21 1 6.4097 9.9599 7.4492 22 1 8.4499 8.9727 8.3116 23 1 8.3925 9.8628 6.0565 24 6 6.0787 4.7246 2.7327 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 2.2354 1.9149 -2.1492 29 1 0.6637 2.2779 -1.3969 30 1 1.9885 3.4635 -1.3075 31 1 3.6266 3.7834 0.9319 32 1 6.0762 2.4583 1.4010 33 1 6.1287 3.1742 -0.2278 34 1 6.0785 5.5792 -0.5297 35 1 6.5642 7.7847 0.4485 36 1 6.7510 8.0366 2.8897 37 1 7.0725 6.6054 8.2369 38 1 5.9419 3.8653 3.3725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113109358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:52 Heat of formation + Delta-G solvation = -64.656140 kcal Electronic energy + Delta-G solvation = -20387.946733 eV Core-core repulsion = 17128.450796 eV Total energy + Delta-G solvation = -3259.495936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12593 -40.57452 -38.48721 -35.84325 -34.41784 -34.24138 -32.08191 -30.76557 -29.64168 -27.71092 -27.03382 -25.21113 -23.27616 -22.46361 -21.66253 -19.68898 -18.97848 -18.25795 -17.81741 -16.85959 -16.66571 -16.44989 -16.10639 -16.07026 -15.52199 -15.39615 -15.13826 -14.86793 -14.48325 -14.32074 -13.98388 -13.94658 -13.70164 -13.45672 -13.16003 -13.03938 -12.92814 -12.70601 -12.52482 -12.38576 -12.28201 -12.12032 -11.23171 -11.09027 -10.82243 -10.81004 -10.21607 -9.77255 -9.04349 -8.73310 -8.47486 -6.16156 0.30073 0.51589 0.70052 1.35699 1.44434 1.48403 1.53037 1.64740 2.16572 2.18343 2.83991 3.14295 3.38740 3.59679 3.79733 3.84257 3.99122 4.08515 4.29457 4.35470 4.37834 4.39534 4.51813 4.60966 4.65875 4.70469 4.72673 4.92536 5.00519 5.11120 5.12909 5.24247 5.27064 5.61388 5.69589 5.70817 6.01050 6.15506 6.40277 6.97366 7.07898 7.77564 8.75614 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.002800 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.017800 B = 9996.134836 C =10584.865234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.271 6.271 3 C -0.079 4.079 4 H 0.128 0.872 5 C -0.136 4.136 6 C 0.530 3.470 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.174 3.826 10 C -0.059 4.059 11 C -0.167 4.167 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.113 3.887 15 O -0.233 6.233 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.252 1.252 24 C -0.182 4.182 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.121 0.879 37 H 0.272 0.728 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 -3.144 -17.021 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.046 6.046 3 C -0.210 4.210 4 H 0.146 0.854 5 C -0.195 4.195 6 C 0.315 3.685 7 O -0.445 6.445 8 N -0.358 5.358 9 C 0.051 3.949 10 C -0.059 4.059 11 C -0.186 4.186 12 C -0.087 4.087 13 C -0.253 4.253 14 C 0.062 3.938 15 O -0.139 6.139 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.175 1.175 24 C -0.202 4.202 25 H 0.131 0.869 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.251 0.749 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.082 -4.862 -16.879 20.769 hybrid contribution -0.560 1.768 1.165 2.189 sum -11.642 -3.094 -15.715 19.800 Atomic orbital electron populations 1.23578 0.91035 1.07735 1.06354 1.87722 1.10092 1.08639 1.98102 1.23294 0.94900 0.97166 1.05684 0.85399 1.21991 1.03053 1.01564 0.92891 1.20182 0.90034 0.81609 0.76664 1.90726 1.61564 1.42110 1.50078 1.45920 1.07873 1.18733 1.63294 1.20060 0.80892 0.92889 1.01042 1.19408 1.00042 0.95241 0.91244 1.20999 1.05832 0.91540 1.00186 1.21172 0.95964 0.98512 0.93007 1.21389 1.10197 0.98579 0.95182 1.19848 0.94715 0.94960 0.84250 1.83947 1.77029 1.35599 1.17353 1.21828 1.47154 0.86639 0.93239 0.87852 1.26587 0.96613 1.03947 0.94921 1.70188 1.48012 1.33607 1.04123 0.84595 0.78724 0.74722 0.78240 1.18722 1.19873 1.17542 1.20221 1.10004 0.94696 0.95239 0.86918 0.89328 0.88591 0.91900 0.89039 0.89526 0.74918 0.92048 0.89258 0.83252 0.83249 0.86137 0.91880 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.45 113.37 1.19 -0.15 16 2 S -0.27 -5.89 21.10 -56.49 -1.19 -7.09 16 3 C -0.08 -1.44 3.18 29.85 0.09 -1.35 16 4 H 0.13 1.79 8.14 -2.39 -0.02 1.78 16 5 C -0.14 -1.73 9.08 71.98 0.65 -1.07 16 6 C 0.53 13.54 6.95 87.66 0.61 14.15 16 7 O -0.57 -19.43 16.14 -3.04 -0.05 -19.48 16 8 N -0.71 -16.36 5.55 -466.77 -2.59 -18.95 16 9 C 0.17 4.67 5.80 85.63 0.50 5.17 16 10 C -0.06 -1.80 5.25 -19.88 -0.10 -1.91 16 11 C -0.17 -4.51 9.70 22.30 0.22 -4.29 16 12 C -0.07 -2.07 10.04 22.25 0.22 -1.85 16 13 C -0.23 -9.41 9.17 22.39 0.21 -9.21 16 14 C 0.11 5.32 6.65 22.58 0.15 5.47 16 15 O -0.23 -13.62 9.76 -22.66 -0.22 -13.84 16 16 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 17 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 18 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 19 N -0.92 -55.96 13.67 21.61 0.30 -55.67 16 20 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 24 C -0.18 -7.32 9.65 22.39 0.22 -7.11 16 25 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.74 7.14 -2.39 -0.02 0.73 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 0.76 6.92 -2.39 -0.02 0.74 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.41 7.93 8.46 -92.71 -0.78 7.14 16 32 H 0.06 1.85 8.08 -2.39 -0.02 1.84 16 33 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 34 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -75.63 340.70 3.62 -72.01 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.29 Total: 24.81 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 5.06 Total: -25.69 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -2.29 Total: -74.62 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.27 Total: -33.32 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -1.19 Total: -7.09 kcal Total: -75.63 3.62 -72.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113109358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.356 kcal (2) G-P(sol) polarization free energy of solvation -75.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds