Wall clock time and date at job start Tue Mar 31 2020 07:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21291 * 120.00127 * 2 1 4 4 N 1.34774 * 120.00284 * 180.02562 * 2 1 3 5 5 C 1.40069 * 120.00538 * 185.52671 * 4 2 1 6 6 C 1.38459 * 120.00439 * 24.82210 * 5 4 2 7 7 C 1.39628 * 119.79859 * 179.77457 * 6 5 4 8 8 C 1.47611 * 120.09354 * 180.22940 * 7 6 5 9 9 O 1.21495 * 120.00101 * 0.27825 * 8 7 6 10 10 O 1.34724 * 120.00405 * 180.27412 * 8 7 6 11 11 C 1.45201 * 117.00258 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46695 * 329.99845 * 11 10 8 13 13 C 1.52999 * 109.47196 * 89.99972 * 11 10 8 14 14 C 1.50697 * 109.47002 * 209.99905 * 11 10 8 15 15 H 1.08000 * 120.00213 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00169 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00202 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00270 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46891 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47430 * 119.99793 * 18 16 14 21 21 H 1.48507 * 109.46842 * 239.99966 * 18 16 14 22 22 C 1.39715 * 119.81249 * 0.50416 * 7 6 5 23 23 C 1.37879 * 120.00653 * 359.75099 * 22 7 6 24 24 C 1.38520 * 120.20056 * 359.97438 * 23 22 7 25 25 F 1.35107 * 119.90098 * 179.97438 * 24 23 22 26 26 H 1.09009 * 109.46701 * 269.99788 * 1 2 3 27 27 H 1.09001 * 109.47265 * 29.99402 * 1 2 3 28 28 H 1.08995 * 109.47302 * 149.99988 * 1 2 3 29 29 H 0.97003 * 119.99491 * 5.79647 * 4 2 1 30 30 H 1.08004 * 120.09885 * 0.03289 * 6 5 4 31 31 H 1.09000 * 109.47008 * 300.00094 * 13 11 10 32 32 H 1.09005 * 109.47072 * 60.00058 * 13 11 10 33 33 H 1.08995 * 109.46756 * 180.02562 * 13 11 10 34 34 H 0.96992 * 120.00456 * 180.02562 * 17 16 14 35 35 H 1.07995 * 119.99261 * 179.72407 * 22 7 6 36 36 H 1.08000 * 119.89862 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5767 -1.1701 0.1163 6 6 4.2225 -0.1090 0.7280 7 6 5.6138 -0.1186 0.8463 8 6 6.3086 1.0068 1.5017 9 8 5.6695 1.9408 1.9436 10 8 7.6514 0.9983 1.6100 11 6 8.2671 2.1376 2.2668 12 1 7.6558 3.0251 2.1033 13 6 8.3766 1.8630 3.7679 14 6 9.6433 2.3633 1.6957 15 1 10.0179 1.7151 0.9173 16 6 10.4241 3.3973 2.1668 17 7 9.9678 4.1870 3.1143 18 14 12.1297 3.6776 1.4585 19 1 12.4044 2.6602 0.4122 20 1 12.2005 5.0350 0.8604 21 1 13.1404 3.5598 2.5402 22 6 6.3468 -1.1937 0.3375 23 6 5.6960 -2.2437 -0.2748 24 6 4.3154 -2.2373 -0.3874 25 9 3.6839 -3.2692 -0.9890 26 1 -0.3633 0.0000 1.0278 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6995 -2.0050 -0.0857 30 1 3.6516 0.7216 1.1161 31 1 7.3812 1.6998 4.1810 32 1 8.9879 0.9754 3.9313 33 1 8.8383 2.7185 4.2609 34 1 10.5169 4.9147 3.4455 35 1 7.4233 -1.2020 0.4235 36 1 6.2643 -3.0737 -0.6679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:36 Heat of formation + Delta-G solvation = -140.819904 kcal Electronic energy + Delta-G solvation = -23047.372292 eV Core-core repulsion = 19218.360471 eV Total energy + Delta-G solvation = -3829.011821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.20327 -40.75302 -39.56622 -38.11599 -35.67406 -35.08920 -33.24703 -31.30223 -30.95531 -29.51698 -28.72669 -25.32578 -24.43978 -23.37563 -21.61379 -20.85018 -19.91462 -18.42742 -17.62495 -17.25641 -16.70956 -16.61512 -16.09866 -15.58803 -15.54643 -15.32175 -14.93722 -14.56124 -14.36828 -13.81791 -13.39385 -13.31938 -13.06581 -12.85190 -12.64064 -12.43449 -12.10919 -11.93234 -11.60742 -11.23824 -11.06999 -10.84054 -10.80406 -10.35263 -10.27597 -10.03123 -9.75509 -9.54047 -8.98254 -8.89101 -8.48675 -8.33768 -6.17375 -4.24290 0.58019 1.05471 2.24437 2.62398 2.92304 3.24907 3.31161 3.35750 3.56648 3.82435 3.90486 4.31906 4.37676 4.57955 4.78368 4.98898 5.00663 5.07314 5.15861 5.18687 5.36309 5.53380 5.77558 5.89246 6.04416 6.14837 6.36071 6.64980 6.70905 6.90404 6.92104 6.97772 7.14886 7.60129 7.73198 7.76127 7.93176 8.13977 8.61363 8.87842 9.41036 10.90252 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.023517 B = 0.003526 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.362284 B = 7938.180975 C = 8691.504510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.511 6.511 4 N -0.670 5.670 5 C 0.102 3.898 6 C -0.050 4.050 7 C -0.098 4.098 8 C 0.496 3.504 9 O -0.508 6.508 10 O -0.350 6.350 11 C 0.215 3.785 12 H 0.048 0.952 13 C -0.155 4.155 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.912 3.088 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.051 4.051 23 C -0.144 4.144 24 C 0.088 3.912 25 F -0.137 7.137 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.414 0.586 30 H 0.169 0.831 31 H 0.016 0.984 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.155 0.845 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.108 -14.963 -6.118 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.294 3.706 3 O -0.385 6.385 4 N -0.316 5.316 5 C 0.007 3.993 6 C -0.070 4.070 7 C -0.100 4.100 8 C 0.339 3.661 9 O -0.399 6.399 10 O -0.266 6.266 11 C 0.163 3.837 12 H 0.066 0.934 13 C -0.213 4.213 14 C -0.558 4.558 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.070 4.070 23 C -0.163 4.163 24 C 0.066 3.934 25 F -0.116 7.116 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.251 0.749 30 H 0.186 0.814 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.173 0.827 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.870 -13.740 -5.866 21.796 hybrid contribution 0.475 -0.383 -0.388 0.723 sum -15.395 -14.123 -6.254 21.808 Atomic orbital electron populations 1.21883 0.90192 1.05362 1.05370 1.21120 0.91118 0.82925 0.75394 1.90808 1.70083 1.31115 1.46516 1.43505 1.04502 1.10510 1.73035 1.17506 0.83552 0.96233 1.02046 1.21439 0.93292 0.97895 0.94346 1.19389 0.92883 0.95263 1.02493 1.20793 0.83083 0.85107 0.77094 1.90801 1.67694 1.35524 1.45833 1.86525 1.18436 1.49849 1.71788 1.20698 0.92464 0.81454 0.89100 0.93385 1.22169 0.98240 1.02880 0.97994 1.21052 0.98446 1.14639 1.21668 0.91172 1.24892 0.98983 0.95184 0.94961 1.69908 1.37503 1.17774 1.27467 0.86212 0.82723 0.78218 0.78933 1.19456 1.20752 1.20737 1.21473 1.01712 0.90727 0.93124 1.20960 0.91411 1.01073 1.02885 1.17613 0.90809 0.86147 0.98822 1.91473 1.82420 1.56546 1.81116 0.88180 0.88220 0.89905 0.74943 0.81410 0.96459 0.94346 0.88180 0.92433 0.82737 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.31 36.00 0.37 -0.56 16 2 C 0.51 5.46 7.74 -10.99 -0.09 5.38 16 3 O -0.51 -8.25 14.27 5.55 0.08 -8.17 16 4 N -0.67 -6.56 5.31 -9.84 -0.05 -6.61 16 5 C 0.10 1.32 6.43 -83.64 -0.54 0.78 16 6 C -0.05 -0.81 8.26 -38.98 -0.32 -1.13 16 7 C -0.10 -1.72 5.87 -105.00 -0.62 -2.33 16 8 C 0.50 11.05 7.87 34.56 0.27 11.32 16 9 O -0.51 -12.80 15.60 -19.26 -0.30 -13.10 16 10 O -0.35 -8.41 9.11 -40.56 -0.37 -8.78 16 11 C 0.22 5.86 2.56 -27.88 -0.07 5.79 16 12 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 13 C -0.16 -3.97 9.33 37.16 0.35 -3.63 16 14 C -0.52 -14.65 8.90 -34.44 -0.31 -14.96 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 18 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.05 -0.72 9.61 -39.16 -0.38 -1.10 16 23 C -0.14 -1.64 10.00 -39.61 -0.40 -2.04 16 24 C 0.09 1.03 7.31 -39.11 -0.29 0.74 16 25 F -0.14 -1.42 16.80 2.25 0.04 -1.38 16 26 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.41 2.55 8.45 -40.82 -0.34 2.20 16 30 H 0.17 3.10 5.37 -52.48 -0.28 2.82 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 35 H 0.15 2.09 7.60 -52.49 -0.40 1.69 16 36 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -34.00 322.29 -6.04 -40.04 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.79 Total: 1.96 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.10 Total: -0.13 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.58 Total: -31.42 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.59 Total: -30.05 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.00 -6.04 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.782 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds