Wall clock time and date at job start Tue Mar 31 2020 07:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21291 * 120.00127 * 2 1 4 4 N 1.34774 * 120.00284 * 180.02562 * 2 1 3 5 5 C 1.40069 * 120.00538 * 185.52671 * 4 2 1 6 6 C 1.38459 * 120.00439 * 24.82210 * 5 4 2 7 7 C 1.39628 * 119.79859 * 179.77457 * 6 5 4 8 8 C 1.47611 * 120.09354 * 180.22940 * 7 6 5 9 9 O 1.21495 * 120.00101 * 0.27825 * 8 7 6 10 10 O 1.34724 * 120.00405 * 180.27412 * 8 7 6 11 11 C 1.45201 * 117.00258 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46695 * 329.99845 * 11 10 8 13 13 C 1.52999 * 109.47196 * 89.99972 * 11 10 8 14 14 C 1.50697 * 109.47002 * 209.99905 * 11 10 8 15 15 H 1.08000 * 120.00213 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00169 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00202 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00270 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46891 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47430 * 119.99793 * 18 16 14 21 21 H 1.48507 * 109.46842 * 239.99966 * 18 16 14 22 22 C 1.39715 * 119.81249 * 0.50416 * 7 6 5 23 23 C 1.37879 * 120.00653 * 359.75099 * 22 7 6 24 24 C 1.38520 * 120.20056 * 359.97438 * 23 22 7 25 25 F 1.35107 * 119.90098 * 179.97438 * 24 23 22 26 26 H 1.09009 * 109.46701 * 269.99788 * 1 2 3 27 27 H 1.09001 * 109.47265 * 29.99402 * 1 2 3 28 28 H 1.08995 * 109.47302 * 149.99988 * 1 2 3 29 29 H 0.97003 * 119.99491 * 5.79647 * 4 2 1 30 30 H 1.08004 * 120.09885 * 0.03289 * 6 5 4 31 31 H 1.09000 * 109.47008 * 300.00094 * 13 11 10 32 32 H 1.09005 * 109.47072 * 60.00058 * 13 11 10 33 33 H 1.08995 * 109.46756 * 180.02562 * 13 11 10 34 34 H 0.96992 * 120.00456 * 180.02562 * 17 16 14 35 35 H 1.07995 * 119.99261 * 179.72407 * 22 7 6 36 36 H 1.08000 * 119.89862 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5767 -1.1701 0.1163 6 6 4.2225 -0.1090 0.7280 7 6 5.6138 -0.1186 0.8463 8 6 6.3086 1.0068 1.5017 9 8 5.6695 1.9408 1.9436 10 8 7.6514 0.9983 1.6100 11 6 8.2671 2.1376 2.2668 12 1 7.6558 3.0251 2.1033 13 6 8.3766 1.8630 3.7679 14 6 9.6433 2.3633 1.6957 15 1 10.0179 1.7151 0.9173 16 6 10.4241 3.3973 2.1668 17 7 9.9678 4.1870 3.1143 18 14 12.1297 3.6776 1.4585 19 1 12.4044 2.6602 0.4122 20 1 12.2005 5.0350 0.8604 21 1 13.1404 3.5598 2.5402 22 6 6.3468 -1.1937 0.3375 23 6 5.6960 -2.2437 -0.2748 24 6 4.3154 -2.2373 -0.3874 25 9 3.6839 -3.2692 -0.9890 26 1 -0.3633 0.0000 1.0278 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6995 -2.0050 -0.0857 30 1 3.6516 0.7216 1.1161 31 1 7.3812 1.6998 4.1810 32 1 8.9879 0.9754 3.9313 33 1 8.8383 2.7185 4.2609 34 1 10.5169 4.9147 3.4455 35 1 7.4233 -1.2020 0.4235 36 1 6.2643 -3.0737 -0.6679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113686875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:36 Heat of formation + Delta-G solvation = -163.150478 kcal Electronic energy + Delta-G solvation = -23048.340618 eV Core-core repulsion = 19218.360471 eV Total energy + Delta-G solvation = -3829.980147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.13831 -41.86317 -41.15793 -39.35361 -37.59739 -36.12210 -35.33389 -32.32733 -32.18118 -31.37745 -29.59267 -27.47979 -25.87647 -24.42476 -23.34366 -21.83892 -21.57286 -19.69793 -18.90692 -18.65388 -18.25211 -17.85690 -17.35439 -17.15521 -16.76449 -16.55763 -16.43250 -16.27173 -15.35979 -15.04047 -14.78766 -14.48195 -14.30766 -14.15673 -13.84780 -13.62865 -13.46129 -13.23983 -13.07244 -13.04136 -12.82685 -12.70445 -12.40903 -12.14126 -11.88895 -11.65189 -11.56485 -11.02822 -10.99878 -10.61906 -10.11325 -9.36787 -8.29276 -6.46600 -0.63274 -0.03141 1.24496 1.42336 1.43932 1.56106 1.57978 1.72299 1.96888 2.40337 2.50414 2.84826 3.01713 3.52388 3.65800 3.70811 3.96018 3.97425 4.27311 4.45207 4.50161 4.61565 4.66872 4.74430 4.76492 4.80118 4.94158 5.03132 5.09557 5.14755 5.20561 5.46712 5.59016 5.63661 5.86487 6.01611 6.22824 6.57869 6.85709 6.96863 7.24668 8.79185 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.023517 B = 0.003526 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.362284 B = 7938.180975 C = 8691.504510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.500 3.500 3 O -0.573 6.573 4 N -0.656 5.656 5 C 0.103 3.897 6 C -0.064 4.064 7 C -0.125 4.125 8 C 0.492 3.508 9 O -0.551 6.551 10 O -0.349 6.349 11 C 0.216 3.784 12 H 0.004 0.996 13 C -0.142 4.142 14 C -0.546 4.546 15 H 0.073 0.927 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.987 3.013 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.047 4.047 23 C -0.123 4.123 24 C 0.111 3.889 25 F -0.119 7.119 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.435 0.565 30 H 0.139 0.861 31 H 0.020 0.980 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.271 0.729 35 H 0.160 0.840 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.253 -18.108 -7.739 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.291 3.709 3 O -0.451 6.451 4 N -0.304 5.304 5 C 0.007 3.993 6 C -0.085 4.085 7 C -0.127 4.127 8 C 0.338 3.662 9 O -0.444 6.444 10 O -0.265 6.265 11 C 0.163 3.837 12 H 0.022 0.978 13 C -0.200 4.200 14 C -0.584 4.584 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.810 3.190 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.066 4.066 23 C -0.142 4.142 24 C 0.088 3.912 25 F -0.098 7.098 26 H 0.135 0.865 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.275 0.725 30 H 0.156 0.844 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.178 0.822 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.063 -16.955 -7.495 24.529 hybrid contribution 0.364 0.503 0.071 0.625 sum -15.699 -16.452 -7.424 23.922 Atomic orbital electron populations 1.21944 0.85646 1.07166 1.06930 1.22188 0.93172 0.82032 0.73502 1.90802 1.71668 1.33356 1.49313 1.43535 1.03277 1.11495 1.72087 1.17486 0.85175 0.95501 1.01154 1.21180 0.92779 0.98591 0.95955 1.19133 0.93274 0.95119 1.05181 1.21720 0.82193 0.85996 0.76289 1.90767 1.68062 1.37626 1.47942 1.86505 1.19776 1.48397 1.71791 1.20442 0.91921 0.81071 0.90287 0.97800 1.21992 0.98491 1.02579 0.96922 1.21323 0.98940 1.15649 1.22456 0.90931 1.25890 1.03261 0.94390 0.95004 1.70034 1.39206 1.18104 1.28328 0.85074 0.77185 0.78237 0.78523 1.18390 1.20339 1.19550 1.21526 1.01892 0.90282 0.92856 1.21299 0.91361 1.00780 1.00757 1.17549 0.90863 0.85562 0.97180 1.91532 1.82175 1.55559 1.80503 0.86507 0.88365 0.86130 0.72488 0.84378 0.96063 0.92974 0.89927 0.91967 0.82194 0.79309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.31 71.23 0.73 -0.65 16 2 C 0.50 10.51 7.74 87.66 0.68 11.19 16 3 O -0.57 -19.50 14.27 -3.06 -0.04 -19.55 16 4 N -0.66 -11.66 5.31 -303.44 -1.61 -13.27 16 5 C 0.10 2.54 6.43 38.11 0.25 2.79 16 6 C -0.06 -2.18 8.26 22.66 0.19 -2.00 16 7 C -0.13 -4.52 5.87 -20.11 -0.12 -4.64 16 8 C 0.49 23.33 7.87 70.30 0.55 23.88 16 9 O -0.55 -30.18 15.60 19.85 0.31 -29.87 16 10 O -0.35 -17.54 9.11 -56.34 -0.51 -18.05 16 11 C 0.22 12.35 2.56 29.85 0.08 12.43 16 12 H 0.00 0.27 7.16 -2.39 -0.02 0.25 16 13 C -0.14 -7.57 9.33 71.98 0.67 -6.90 16 14 C -0.55 -31.51 8.90 25.60 0.23 -31.28 16 15 H 0.07 4.04 7.81 -2.91 -0.02 4.02 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -53.85 11.32 21.45 0.24 -53.60 16 18 Si 0.99 43.26 29.54 68.60 2.03 45.29 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 22 C -0.05 -1.25 9.61 22.54 0.22 -1.04 16 23 C -0.12 -2.36 10.00 22.25 0.22 -2.13 16 24 C 0.11 2.20 7.31 22.57 0.17 2.37 16 25 F -0.12 -1.90 16.80 44.97 0.76 -1.15 16 26 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.43 3.87 8.45 -92.71 -0.78 3.09 16 30 H 0.14 5.59 5.37 -2.91 -0.02 5.57 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.08 4.69 6.07 -2.39 -0.01 4.68 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.16 4.12 7.60 -2.91 -0.02 4.09 16 36 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -79.72 322.29 5.83 -73.89 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.35 Total: 11.07 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 4.31 Total: 5.24 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -1.37 Total: -66.87 kcal Atomic # 8 Polarization: -67.23 SS G_CDS: -0.25 Total: -67.47 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.76 Total: -1.15 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -79.72 5.83 -73.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.264 kcal (2) G-P(sol) polarization free energy of solvation -79.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds