Wall clock time and date at job start Tue Mar 31 2020 07:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21292 * 119.99754 * 2 1 4 4 N 1.34769 * 120.00256 * 179.97438 * 2 1 3 5 5 C 1.40055 * 120.00259 * 185.27333 * 4 2 1 6 6 C 1.39053 * 119.96118 * 213.26217 * 5 4 2 7 7 C 1.38115 * 120.28114 * 179.97438 * 6 5 4 8 8 C 1.38322 * 120.20090 * 0.02562 * 7 6 5 9 9 F 1.35107 * 120.03978 * 179.97438 * 8 7 6 10 10 C 1.39868 * 119.91773 * 359.97438 * 8 7 6 11 11 C 1.47574 * 120.14080 * 180.02562 * 10 8 7 12 12 O 1.21492 * 120.00183 * 359.97438 * 11 10 8 13 13 O 1.34727 * 120.00093 * 179.97438 * 11 10 8 14 14 C 1.45201 * 117.00129 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47315 * 330.00597 * 14 13 11 16 16 C 1.53001 * 109.46910 * 90.00309 * 14 13 11 17 17 C 1.50699 * 109.47494 * 210.00322 * 14 13 11 18 18 H 1.08002 * 119.99620 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00328 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99887 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00168 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47265 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47144 * 120.00032 * 21 19 17 24 24 H 1.48498 * 109.47155 * 240.00002 * 21 19 17 25 25 C 1.38465 * 119.95989 * 33.53719 * 5 4 2 26 26 H 1.08995 * 109.46800 * 239.99669 * 1 2 3 27 27 H 1.08999 * 109.47408 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46929 * 119.99836 * 1 2 3 29 29 H 0.97007 * 119.99805 * 5.27509 * 4 2 1 30 30 H 1.08001 * 119.85741 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.89766 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47280 * 180.02562 * 16 14 13 33 33 H 1.09006 * 109.47059 * 300.00236 * 16 14 13 34 34 H 1.08991 * 109.47283 * 59.99855 * 16 14 13 35 35 H 0.97000 * 119.99716 * 180.02562 * 20 19 17 36 36 H 1.08000 * 120.10043 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5770 -1.1696 0.1120 6 6 4.3237 -2.1471 -0.5365 7 6 5.7009 -2.1555 -0.4315 8 6 6.3473 -1.1912 0.3205 9 9 7.6945 -1.2028 0.4214 10 6 5.6044 -0.2041 0.9763 11 6 6.2890 0.8274 1.7795 12 8 7.5004 0.8202 1.8725 13 8 5.5708 1.7772 2.4096 14 6 6.3105 2.7593 3.1821 15 1 7.2254 2.3066 3.5645 16 6 6.6654 3.9492 2.2882 17 6 5.4640 3.2324 4.3357 18 1 4.4696 2.8345 4.4745 19 6 5.9590 4.1732 5.2137 20 7 7.1697 4.6581 5.0442 21 14 4.9094 4.7602 6.6430 22 1 3.5965 4.0671 6.6105 23 1 5.5994 4.4547 7.9220 24 1 4.6977 6.2258 6.5326 25 6 4.2117 -0.2021 0.8725 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6990 -2.0055 -0.0763 30 1 3.8246 -2.9029 -1.1248 31 1 6.2747 -2.9179 -0.9375 32 1 7.2211 4.6862 2.8679 33 1 7.2777 3.6069 1.4538 34 1 5.7507 4.4019 1.9058 35 1 7.5180 5.3197 5.6621 36 1 3.6318 0.5543 1.3803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:27 Heat of formation + Delta-G solvation = -139.933502 kcal Electronic energy + Delta-G solvation = -23421.035715 eV Core-core repulsion = 19592.062331 eV Total energy + Delta-G solvation = -3828.973384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.71156 -40.69076 -39.43045 -38.16254 -35.64300 -34.78872 -33.22847 -31.60258 -30.92012 -29.40724 -28.42006 -25.28182 -24.59076 -23.21270 -21.68226 -20.63444 -19.90540 -18.18424 -17.47562 -17.25451 -16.56662 -16.49299 -15.99976 -15.57749 -15.33799 -15.22630 -14.66955 -14.47398 -14.19129 -13.90709 -13.31008 -13.27306 -13.01259 -12.76918 -12.67948 -12.35320 -12.07422 -11.80585 -11.58180 -11.18461 -11.04346 -10.78574 -10.46355 -10.30872 -10.23764 -10.07898 -9.67717 -9.49138 -9.21255 -8.84513 -8.44870 -8.20163 -6.13728 -4.20182 0.62347 1.03456 2.31878 2.76397 2.99326 3.26882 3.32572 3.37436 3.55452 3.78657 4.20362 4.35779 4.42845 4.58266 4.75928 4.91148 5.04488 5.12207 5.19137 5.23260 5.38444 5.56145 5.73409 5.96888 5.99361 6.13107 6.25959 6.69190 6.74675 6.97007 6.98261 7.09181 7.19435 7.63892 7.78151 7.88640 7.96764 8.18529 8.64398 8.91746 9.44616 10.93951 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.004955 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.167533 B = 5649.212897 C = 7275.663596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.504 3.496 3 O -0.510 6.510 4 N -0.675 5.675 5 C 0.117 3.883 6 C -0.092 4.092 7 C -0.150 4.150 8 C 0.143 3.857 9 F -0.114 7.114 10 C -0.129 4.129 11 C 0.495 3.505 12 O -0.503 6.503 13 O -0.346 6.346 14 C 0.215 3.785 15 H 0.048 0.952 16 C -0.155 4.155 17 C -0.518 4.518 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.912 3.088 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.037 4.037 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.412 0.588 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.016 0.984 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 -15.879 -12.172 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.383 6.383 4 N -0.322 5.322 5 C 0.023 3.977 6 C -0.113 4.113 7 C -0.169 4.169 8 C 0.123 3.877 9 F -0.093 7.093 10 C -0.132 4.132 11 C 0.338 3.662 12 O -0.394 6.394 13 O -0.262 6.262 14 C 0.163 3.837 15 H 0.066 0.934 16 C -0.213 4.213 17 C -0.556 4.556 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.527 5.527 21 Si 0.739 3.261 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.057 4.057 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.248 0.752 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.118 0.882 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.803 -14.880 -12.001 22.466 hybrid contribution -0.327 -0.059 0.689 0.765 sum -12.130 -14.939 -11.311 22.322 Atomic orbital electron populations 1.21918 0.90459 1.06255 1.04421 1.21112 0.91060 0.83155 0.75497 1.90863 1.70353 1.30972 1.46107 1.43559 1.04643 1.10089 1.73924 1.17598 0.83391 0.98067 0.98620 1.20844 0.92921 0.99147 0.98360 1.20828 0.94549 0.99784 1.01746 1.17712 0.77718 0.95004 0.97308 1.91600 1.27975 1.95667 1.94010 1.19438 0.93796 0.97169 1.02790 1.20633 0.85765 0.81431 0.78385 1.90830 1.14709 1.74081 1.59750 1.86561 1.42601 1.37927 1.59084 1.20703 0.92728 0.82388 0.87866 0.93421 1.22162 0.99982 1.00966 0.98159 1.21050 1.01918 1.23834 1.08799 0.91253 1.24886 0.95361 0.95705 0.98057 1.69918 1.15766 1.29645 1.37362 0.86211 0.80148 0.78484 0.81235 1.19506 1.20769 1.20705 1.21467 0.92603 0.97670 0.93994 0.88903 0.88359 0.89232 0.75218 0.84301 0.83557 0.88168 0.96478 0.94298 0.92475 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.32 36.01 0.37 -0.60 16 2 C 0.50 5.36 7.67 -10.99 -0.08 5.28 16 3 O -0.51 -8.41 14.78 5.55 0.08 -8.33 16 4 N -0.68 -5.77 5.34 -9.88 -0.05 -5.82 16 5 C 0.12 1.39 6.27 -83.71 -0.53 0.86 16 6 C -0.09 -0.86 9.95 -39.32 -0.39 -1.25 16 7 C -0.15 -1.66 10.00 -39.60 -0.40 -2.06 16 8 C 0.14 2.30 7.28 -38.94 -0.28 2.01 16 9 F -0.11 -2.08 15.54 2.25 0.03 -2.05 16 10 C -0.13 -2.41 5.88 -104.95 -0.62 -3.03 16 11 C 0.49 11.74 7.87 34.54 0.27 12.01 16 12 O -0.50 -13.15 14.59 -19.26 -0.28 -13.43 16 13 O -0.35 -8.96 9.11 -40.56 -0.37 -9.33 16 14 C 0.22 6.13 2.56 -27.88 -0.07 6.06 16 15 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 16 C -0.15 -4.19 9.33 37.16 0.35 -3.85 16 17 C -0.52 -15.12 8.90 -34.44 -0.31 -15.42 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.99 11.32 55.43 0.63 -25.37 16 21 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.04 -0.61 8.22 -38.97 -0.32 -0.93 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.41 1.64 8.82 -40.82 -0.36 1.28 16 30 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.10 2.84 6.07 -51.93 -0.32 2.53 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.16 3.01 5.97 -52.49 -0.31 2.69 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -36.49 322.05 -6.09 -42.58 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -3.86 Total: -0.47 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.10 Total: 0.75 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.57 Total: -31.19 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.57 Total: -31.09 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.03 Total: -2.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.49 -6.09 -42.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.355 kcal (2) G-P(sol) polarization free energy of solvation -36.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds