Wall clock time and date at job start Tue Mar 31 2020 07:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21292 * 119.99754 * 2 1 4 4 N 1.34769 * 120.00256 * 179.97438 * 2 1 3 5 5 C 1.40055 * 120.00259 * 185.27333 * 4 2 1 6 6 C 1.39053 * 119.96118 * 213.26217 * 5 4 2 7 7 C 1.38115 * 120.28114 * 179.97438 * 6 5 4 8 8 C 1.38322 * 120.20090 * 0.02562 * 7 6 5 9 9 F 1.35107 * 120.03978 * 179.97438 * 8 7 6 10 10 C 1.39868 * 119.91773 * 359.97438 * 8 7 6 11 11 C 1.47574 * 120.14080 * 180.02562 * 10 8 7 12 12 O 1.21492 * 120.00183 * 359.97438 * 11 10 8 13 13 O 1.34727 * 120.00093 * 179.97438 * 11 10 8 14 14 C 1.45201 * 117.00129 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47315 * 330.00597 * 14 13 11 16 16 C 1.53001 * 109.46910 * 90.00309 * 14 13 11 17 17 C 1.50699 * 109.47494 * 210.00322 * 14 13 11 18 18 H 1.08002 * 119.99620 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00328 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99887 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00168 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47265 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47144 * 120.00032 * 21 19 17 24 24 H 1.48498 * 109.47155 * 240.00002 * 21 19 17 25 25 C 1.38465 * 119.95989 * 33.53719 * 5 4 2 26 26 H 1.08995 * 109.46800 * 239.99669 * 1 2 3 27 27 H 1.08999 * 109.47408 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46929 * 119.99836 * 1 2 3 29 29 H 0.97007 * 119.99805 * 5.27509 * 4 2 1 30 30 H 1.08001 * 119.85741 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.89766 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47280 * 180.02562 * 16 14 13 33 33 H 1.09006 * 109.47059 * 300.00236 * 16 14 13 34 34 H 1.08991 * 109.47283 * 59.99855 * 16 14 13 35 35 H 0.97000 * 119.99716 * 180.02562 * 20 19 17 36 36 H 1.08000 * 120.10043 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5770 -1.1696 0.1120 6 6 4.3237 -2.1471 -0.5365 7 6 5.7009 -2.1555 -0.4315 8 6 6.3473 -1.1912 0.3205 9 9 7.6945 -1.2028 0.4214 10 6 5.6044 -0.2041 0.9763 11 6 6.2890 0.8274 1.7795 12 8 7.5004 0.8202 1.8725 13 8 5.5708 1.7772 2.4096 14 6 6.3105 2.7593 3.1821 15 1 7.2254 2.3066 3.5645 16 6 6.6654 3.9492 2.2882 17 6 5.4640 3.2324 4.3357 18 1 4.4696 2.8345 4.4745 19 6 5.9590 4.1732 5.2137 20 7 7.1697 4.6581 5.0442 21 14 4.9094 4.7602 6.6430 22 1 3.5965 4.0671 6.6105 23 1 5.5994 4.4547 7.9220 24 1 4.6977 6.2258 6.5326 25 6 4.2117 -0.2021 0.8725 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6990 -2.0055 -0.0763 30 1 3.8246 -2.9029 -1.1248 31 1 6.2747 -2.9179 -0.9375 32 1 7.2211 4.6862 2.8679 33 1 7.2777 3.6069 1.4538 34 1 5.7507 4.4019 1.9058 35 1 7.5180 5.3197 5.6621 36 1 3.6318 0.5543 1.3803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:27 Heat of formation + Delta-G solvation = -165.866757 kcal Electronic energy + Delta-G solvation = -23422.160265 eV Core-core repulsion = 19592.062331 eV Total energy + Delta-G solvation = -3830.097934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.00974 -41.76789 -41.14007 -39.32205 -37.65697 -35.80095 -35.40268 -32.88336 -31.71940 -31.51889 -29.24743 -27.54596 -26.03322 -24.38496 -23.28473 -21.84539 -21.47689 -19.64398 -18.78691 -18.59467 -18.16031 -18.00895 -17.29564 -17.08626 -16.96230 -16.42969 -16.28421 -16.19580 -15.27371 -14.96395 -14.82639 -14.41818 -14.36191 -14.15647 -13.89115 -13.68653 -13.30103 -13.27290 -13.08732 -12.97527 -12.87273 -12.71460 -12.47096 -12.18551 -11.71086 -11.63776 -11.40297 -11.07961 -11.00463 -10.66584 -10.33200 -9.22419 -8.33731 -6.51678 -0.59396 -0.03651 1.31076 1.37579 1.40283 1.53491 1.63395 1.80484 2.03405 2.36566 2.50339 2.96379 3.05467 3.44173 3.68348 3.82365 3.98158 4.09619 4.31055 4.41212 4.55737 4.64745 4.69051 4.71934 4.73144 4.88225 4.94255 4.99921 5.07069 5.15213 5.26001 5.39859 5.51049 5.72353 5.79210 5.96001 6.42876 6.51049 6.78763 7.16692 7.19273 8.75054 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.004955 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.167533 B = 5649.212897 C = 7275.663596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.497 3.503 3 O -0.579 6.579 4 N -0.654 5.654 5 C 0.124 3.876 6 C -0.052 4.052 7 C -0.125 4.125 8 C 0.120 3.880 9 F -0.135 7.135 10 C -0.166 4.166 11 C 0.486 3.514 12 O -0.542 6.542 13 O -0.355 6.355 14 C 0.216 3.784 15 H 0.009 0.991 16 C -0.141 4.141 17 C -0.549 4.549 18 H 0.065 0.935 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.989 3.011 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.268 1.268 25 C -0.057 4.057 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.439 0.561 30 H 0.205 0.795 31 H 0.192 0.808 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.043 0.957 35 H 0.273 0.727 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 -18.836 -13.551 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.287 3.713 3 O -0.457 6.457 4 N -0.303 5.303 5 C 0.029 3.971 6 C -0.072 4.072 7 C -0.144 4.144 8 C 0.100 3.900 9 F -0.114 7.114 10 C -0.168 4.168 11 C 0.332 3.668 12 O -0.434 6.434 13 O -0.272 6.272 14 C 0.163 3.837 15 H 0.026 0.974 16 C -0.199 4.199 17 C -0.587 4.587 18 H 0.083 0.917 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.812 3.188 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.077 4.077 26 H 0.136 0.864 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.281 0.719 30 H 0.222 0.778 31 H 0.209 0.791 32 H 0.105 0.895 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.901 -17.906 -13.403 26.875 hybrid contribution 0.576 0.730 1.010 1.372 sum -14.325 -17.176 -12.393 25.570 Atomic orbital electron populations 1.21956 0.86210 1.06435 1.07342 1.22129 0.93047 0.82471 0.73614 1.90857 1.71980 1.33574 1.49302 1.43476 1.03235 1.11065 1.72539 1.17736 0.85199 0.96999 0.97151 1.21521 0.91930 0.98091 0.95631 1.21367 0.95522 0.98274 0.99239 1.18172 0.76953 0.96073 0.98794 1.91543 1.29585 1.95870 1.94355 1.19232 0.94922 0.97622 1.05066 1.21678 0.85769 0.81518 0.77832 1.90778 1.16247 1.75074 1.61332 1.86559 1.42666 1.38493 1.59436 1.20459 0.91573 0.82971 0.88665 0.97350 1.21986 0.99927 1.00223 0.97725 1.21264 1.02021 1.25300 1.10098 0.91676 1.25910 0.96692 0.95083 1.00696 1.70031 1.17289 1.29699 1.38432 0.85047 0.78312 0.78314 0.77168 1.18801 1.19644 1.19333 1.21221 0.91510 0.99060 0.95950 0.86422 0.89691 0.85458 0.71911 0.77794 0.79107 0.89451 0.96211 0.93778 0.91784 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.32 71.24 0.74 -0.59 16 2 C 0.50 9.79 7.67 87.66 0.67 10.46 16 3 O -0.58 -19.79 14.78 -3.07 -0.05 -19.83 16 4 N -0.65 -8.85 5.34 -303.57 -1.62 -10.47 16 5 C 0.12 2.61 6.27 38.08 0.24 2.85 16 6 C -0.05 -0.67 9.95 22.44 0.22 -0.45 16 7 C -0.13 -2.25 10.00 22.26 0.22 -2.03 16 8 C 0.12 3.86 7.28 22.68 0.17 4.02 16 9 F -0.14 -5.09 15.54 44.97 0.70 -4.39 16 10 C -0.17 -6.55 5.88 -20.08 -0.12 -6.67 16 11 C 0.49 25.15 7.87 70.29 0.55 25.71 16 12 O -0.54 -30.89 14.59 19.86 0.29 -30.60 16 13 O -0.36 -20.09 9.11 -56.37 -0.51 -20.61 16 14 C 0.22 13.26 2.56 29.85 0.08 13.34 16 15 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 16 C -0.14 -8.13 9.33 71.98 0.67 -7.46 16 17 C -0.55 -33.73 8.90 25.60 0.23 -33.50 16 18 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 19 C 0.02 0.92 5.30 84.65 0.45 1.37 16 20 N -0.92 -55.30 11.32 21.45 0.24 -55.06 16 21 Si 0.99 44.92 29.54 68.60 2.03 46.95 16 22 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.06 -1.93 8.22 22.67 0.19 -1.74 16 26 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 0.99 8.12 -2.39 -0.02 0.98 16 28 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.44 1.00 8.82 -92.70 -0.82 0.19 16 30 H 0.21 0.17 8.06 -2.91 -0.02 0.14 16 31 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.09 5.24 6.07 -2.39 -0.01 5.23 16 33 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.04 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.13 5.18 5.97 -2.91 -0.02 5.17 16 Total: -1.00 -90.92 322.05 5.70 -85.22 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.32 Total: 3.47 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 4.30 Total: 5.32 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -1.38 Total: -65.53 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -0.27 Total: -71.04 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.70 Total: -4.39 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -90.92 5.70 -85.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.647 kcal (2) G-P(sol) polarization free energy of solvation -90.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds