Wall clock time and date at job start Tue Mar 31 2020 07:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21291 * 119.99735 * 2 1 4 4 N 1.34773 * 120.00208 * 179.97438 * 2 1 3 5 5 C 1.40059 * 120.00254 * 185.27550 * 4 2 1 6 6 C 1.39045 * 119.95899 * 213.26094 * 5 4 2 7 7 C 1.38123 * 120.28098 * 179.97438 * 6 5 4 8 8 C 1.38319 * 120.19930 * 0.02562 * 7 6 5 9 9 F 1.35101 * 120.03921 * 179.97438 * 8 7 6 10 10 C 1.39872 * 119.91716 * 359.97438 * 8 7 6 11 11 C 1.47580 * 120.13618 * 180.02562 * 10 8 7 12 12 O 1.21488 * 120.00092 * 359.97438 * 11 10 8 13 13 O 1.34736 * 119.99518 * 179.97438 * 11 10 8 14 14 C 1.45200 * 116.99658 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47350 * 29.99511 * 14 13 11 16 16 C 1.52996 * 109.46813 * 269.99633 * 14 13 11 17 17 C 1.50699 * 109.47048 * 149.99722 * 14 13 11 18 18 H 1.08005 * 119.99889 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99981 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00138 * 0.02562 * 19 17 14 21 21 Si 1.86796 * 119.99979 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46915 * 90.00838 * 21 19 17 23 23 H 1.48506 * 109.47297 * 210.00396 * 21 19 17 24 24 H 1.48496 * 109.47657 * 330.00659 * 21 19 17 25 25 C 1.38463 * 119.95780 * 33.53439 * 5 4 2 26 26 H 1.09003 * 109.46672 * 240.00525 * 1 2 3 27 27 H 1.09004 * 109.46935 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46590 * 120.00561 * 1 2 3 29 29 H 0.97000 * 119.99822 * 5.26908 * 4 2 1 30 30 H 1.07998 * 119.86191 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.89576 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.47551 * 299.99976 * 16 14 13 33 33 H 1.09000 * 109.47247 * 60.00479 * 16 14 13 34 34 H 1.09001 * 109.46981 * 180.02562 * 16 14 13 35 35 H 0.96996 * 120.00051 * 179.97438 * 20 19 17 36 36 H 1.08000 * 120.10420 * 0.02746 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5771 -1.1697 0.1120 6 6 4.3237 -2.1471 -0.5364 7 6 5.7009 -2.1556 -0.4314 8 6 6.3473 -1.1913 0.3206 9 9 7.6945 -1.2030 0.4215 10 6 5.6044 -0.2042 0.9764 11 6 6.2892 0.8273 1.7796 12 8 7.5004 0.8200 1.8726 13 8 5.5708 1.7772 2.4098 14 6 6.3107 2.7599 3.1813 15 1 7.2929 2.9092 2.7331 16 6 6.4764 2.2605 4.6180 17 6 5.5573 4.0650 3.1869 18 1 4.6163 4.1476 2.6632 19 6 6.0688 5.1534 3.8612 20 7 7.2144 5.0527 4.4993 21 14 5.1354 6.7714 3.8675 22 1 4.2075 6.8030 5.0265 23 1 6.0976 7.8976 3.9729 24 1 4.3590 6.8999 2.6082 25 6 4.2117 -0.2022 0.8726 26 1 -0.3633 -0.5138 0.8901 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3632 -0.5139 -0.8899 29 1 1.6991 -2.0054 -0.0762 30 1 3.8247 -2.9029 -1.1248 31 1 6.2747 -2.9179 -0.9374 32 1 5.4942 2.1112 5.0664 33 1 7.0213 1.3165 4.6140 34 1 7.0314 2.9984 5.1974 35 1 7.5745 5.8185 4.9734 36 1 3.6319 0.5543 1.3804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:29 Heat of formation + Delta-G solvation = -165.833204 kcal Electronic energy + Delta-G solvation = -23428.038639 eV Core-core repulsion = 19597.942160 eV Total energy + Delta-G solvation = -3830.096479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.01092 -41.76801 -41.14024 -39.32364 -37.65724 -35.80263 -35.40527 -32.88282 -31.71993 -31.51636 -29.24744 -27.53845 -26.03232 -24.38388 -23.28178 -21.84330 -21.47769 -19.64351 -18.78374 -18.59510 -18.15908 -18.02942 -17.18548 -17.11555 -17.03642 -16.41714 -16.28973 -16.20039 -15.27456 -14.96380 -14.82445 -14.45395 -14.30023 -14.13679 -13.95437 -13.65306 -13.31846 -13.25694 -13.08389 -12.98422 -12.85921 -12.71108 -12.47235 -12.20690 -11.69732 -11.65147 -11.40072 -11.08943 -11.00556 -10.65941 -10.33177 -9.22463 -8.34165 -6.51902 -0.59385 -0.03666 1.31043 1.36810 1.40363 1.51324 1.63238 1.80771 2.03368 2.36126 2.50529 2.95702 3.05517 3.44172 3.68419 3.82351 3.98199 4.09662 4.31147 4.41894 4.55716 4.64917 4.69895 4.71917 4.73384 4.88355 4.94301 5.00291 5.07450 5.15202 5.26064 5.40134 5.52189 5.72407 5.79788 5.96236 6.43044 6.50742 6.78880 7.17089 7.19078 8.74180 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.005065 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.601167 B = 5526.392979 C = 7286.519719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.496 3.504 3 O -0.579 6.579 4 N -0.654 5.654 5 C 0.124 3.876 6 C -0.052 4.052 7 C -0.125 4.125 8 C 0.120 3.880 9 F -0.135 7.135 10 C -0.166 4.166 11 C 0.486 3.514 12 O -0.541 6.541 13 O -0.355 6.355 14 C 0.216 3.784 15 H 0.006 0.994 16 C -0.139 4.139 17 C -0.551 4.551 18 H 0.061 0.939 19 C 0.018 3.982 20 N -0.915 5.915 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.057 4.057 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.439 0.561 30 H 0.205 0.795 31 H 0.192 0.808 32 H 0.047 0.953 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.273 0.727 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.852 -20.131 -11.752 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.287 3.713 3 O -0.457 6.457 4 N -0.303 5.303 5 C 0.029 3.971 6 C -0.072 4.072 7 C -0.144 4.144 8 C 0.100 3.900 9 F -0.113 7.113 10 C -0.169 4.169 11 C 0.332 3.668 12 O -0.434 6.434 13 O -0.272 6.272 14 C 0.163 3.837 15 H 0.024 0.976 16 C -0.197 4.197 17 C -0.589 4.589 18 H 0.080 0.920 19 C -0.182 4.182 20 N -0.553 5.553 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.077 4.077 26 H 0.137 0.863 27 H 0.102 0.898 28 H 0.145 0.855 29 H 0.281 0.719 30 H 0.222 0.778 31 H 0.209 0.791 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.999 -19.232 -11.554 26.988 hybrid contribution 0.583 1.050 0.551 1.321 sum -14.417 -18.182 -11.003 25.680 Atomic orbital electron populations 1.21957 0.86181 1.06406 1.07375 1.22143 0.93063 0.82472 0.73629 1.90873 1.71984 1.33614 1.49273 1.43471 1.03224 1.11042 1.72554 1.17735 0.85205 0.97000 0.97148 1.21521 0.91931 0.98112 0.95610 1.21367 0.95521 0.98300 0.99217 1.18171 0.76950 0.96077 0.98793 1.91541 1.29587 1.95873 1.94348 1.19237 0.94922 0.97553 1.05142 1.21679 0.85760 0.81626 0.77732 1.90777 1.16241 1.74497 1.61906 1.86561 1.42637 1.38233 1.59738 1.20453 0.91269 0.84408 0.87557 0.97595 1.21971 1.00496 0.99037 0.98194 1.21233 1.08016 0.94606 1.35024 0.92042 1.25863 0.95962 1.02730 0.93616 1.70014 1.19537 1.32655 1.33090 0.85138 0.78159 0.76717 0.79109 1.18657 1.19669 1.19442 1.21222 0.91516 0.98968 0.96032 0.86318 0.89762 0.85473 0.71896 0.77794 0.79108 0.93421 0.95930 0.89547 0.91747 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.32 71.24 0.74 -0.61 16 2 C 0.50 9.89 7.67 87.66 0.67 10.56 16 3 O -0.58 -20.17 14.78 -3.06 -0.05 -20.22 16 4 N -0.65 -8.84 5.34 -303.57 -1.62 -10.46 16 5 C 0.12 2.61 6.27 38.07 0.24 2.85 16 6 C -0.05 -0.67 9.95 22.44 0.22 -0.45 16 7 C -0.13 -2.25 10.00 22.26 0.22 -2.03 16 8 C 0.12 3.86 7.28 22.68 0.17 4.03 16 9 F -0.14 -5.08 15.54 44.97 0.70 -4.39 16 10 C -0.17 -6.56 5.88 -20.07 -0.12 -6.67 16 11 C 0.49 25.16 7.87 70.29 0.55 25.71 16 12 O -0.54 -30.88 14.59 19.88 0.29 -30.59 16 13 O -0.36 -20.11 9.11 -56.47 -0.51 -20.62 16 14 C 0.22 13.25 2.56 29.85 0.08 13.33 16 15 H 0.01 0.42 7.16 -2.39 -0.02 0.41 16 16 C -0.14 -7.85 9.33 71.98 0.67 -7.18 16 17 C -0.55 -34.28 8.90 25.60 0.23 -34.05 16 18 H 0.06 3.82 7.81 -2.91 -0.02 3.80 16 19 C 0.02 1.06 5.30 84.65 0.45 1.51 16 20 N -0.92 -55.32 11.32 21.45 0.24 -55.08 16 21 Si 0.99 45.60 29.54 68.60 2.03 47.63 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 25 C -0.06 -1.93 8.22 22.67 0.19 -1.74 16 26 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 28 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.44 0.96 8.82 -92.71 -0.82 0.14 16 30 H 0.21 0.17 8.06 -2.91 -0.02 0.14 16 31 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 5.10 6.07 -2.39 -0.01 5.08 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.13 5.18 5.97 -2.91 -0.02 5.17 16 Total: -1.00 -91.55 322.05 5.70 -85.85 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 0.32 Total: 2.62 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 4.30 Total: 5.26 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -1.38 Total: -65.54 kcal Atomic # 8 Polarization: -71.15 SS G_CDS: -0.27 Total: -71.42 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.70 Total: -4.39 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -91.55 5.70 -85.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.983 kcal (2) G-P(sol) polarization free energy of solvation -91.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds