Wall clock time and date at job start Tue Mar 31 2020 07:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.53003 * 109.47229 * 240.00892 * 2 1 3 5 5 N 1.46498 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.34773 * 120.00282 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99858 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00404 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.47321 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00002 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00073 * 180.02562 * 10 9 8 13 13 N 1.31632 * 120.00038 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00021 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47140 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47080 * 119.99712 * 14 12 10 17 17 H 1.48503 * 109.47165 * 239.99409 * 14 12 10 18 18 O 1.42894 * 109.47313 * 120.00299 * 2 1 3 19 19 C 1.35895 * 117.00154 * 275.09211 * 18 2 1 20 20 C 1.38737 * 120.05812 * 5.46272 * 19 18 2 21 21 C 1.38143 * 119.94711 * 180.29652 * 20 19 18 22 22 C 1.38267 * 120.05366 * 359.47123 * 21 20 19 23 23 C 1.38272 * 120.11130 * 0.50694 * 22 21 20 24 24 C 1.38141 * 120.05470 * 359.76792 * 23 22 21 25 25 H 1.08991 * 109.46872 * 299.99383 * 1 2 3 26 26 H 1.09002 * 109.47242 * 59.99772 * 1 2 3 27 27 H 1.09001 * 109.46584 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46831 * 299.99777 * 4 2 1 29 29 H 1.09002 * 109.47551 * 59.99525 * 4 2 1 30 30 H 0.97005 * 120.00040 * 359.97438 * 5 4 2 31 31 H 1.09001 * 109.46583 * 300.00247 * 8 6 5 32 32 H 1.09002 * 109.47126 * 59.99750 * 8 6 5 33 33 H 0.97005 * 119.99997 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.01964 * 0.02750 * 20 19 18 35 35 H 1.07993 * 119.97132 * 179.69852 * 21 20 19 36 36 H 1.08001 * 119.94562 * 180.25587 * 22 21 20 37 37 H 1.08000 * 119.97058 * 179.74941 * 23 22 21 38 38 H 1.08002 * 120.02545 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2494 5 7 3.5050 -0.7205 -1.2497 6 6 4.1790 -1.3043 -2.2603 7 8 3.5726 -1.8305 -3.1694 8 6 5.6860 -1.3043 -2.2604 9 16 6.2893 -2.1585 -3.7377 10 6 8.0273 -2.0126 -3.4871 11 1 8.4060 -1.5057 -2.6119 12 6 8.9096 -2.5482 -4.4150 13 7 8.4481 -3.1657 -5.4820 14 14 10.7522 -2.3929 -4.1496 15 1 11.0100 -1.6602 -2.8841 16 1 11.3567 -3.7471 -4.0701 17 1 11.3546 -1.6478 -5.2842 18 8 2.0064 -0.6737 1.1667 19 6 2.1107 0.0620 2.3045 20 6 1.6563 1.3726 2.3288 21 6 1.7691 2.1203 3.4849 22 6 2.3244 1.5600 4.6205 23 6 2.7777 0.2539 4.5990 24 6 2.6723 -0.4961 3.4438 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6767 -1.7488 -1.2495 29 1 1.6767 -0.2072 -2.1393 30 1 3.9901 -0.3000 -0.5224 31 1 6.0492 -0.2766 -2.2606 32 1 6.0494 -1.8179 -1.3703 33 1 9.0647 -3.5403 -6.1303 34 1 1.2187 1.8092 1.4432 35 1 1.4199 3.1421 3.5028 36 1 2.4080 2.1449 5.5246 37 1 3.2147 -0.1802 5.4862 38 1 3.0268 -1.5162 3.4274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113824609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:35 Heat of formation + Delta-G solvation = -55.128068 kcal Electronic energy + Delta-G solvation = -20287.152929 eV Core-core repulsion = 17028.070161 eV Total energy + Delta-G solvation = -3259.082768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65251 -39.12059 -37.86689 -34.78769 -32.43667 -32.39532 -31.15337 -29.93298 -29.38860 -26.05962 -25.37900 -23.64232 -22.71703 -21.15674 -20.30806 -18.71989 -17.87122 -16.75038 -16.31173 -16.24698 -15.80428 -15.26347 -15.12553 -14.79364 -14.77334 -14.06914 -13.80275 -13.78768 -13.38482 -13.00844 -12.91578 -12.84428 -12.59142 -12.46386 -11.90636 -11.77221 -11.51106 -11.29712 -11.05988 -11.00626 -10.93899 -10.74023 -9.79414 -9.41434 -9.30914 -9.06740 -8.90858 -8.48943 -8.21871 -6.48541 -6.20616 -3.90885 1.02772 1.14818 2.81537 3.03335 3.11118 3.22605 3.29055 3.33888 3.49233 3.71213 4.21550 4.30108 4.50320 4.55218 4.63137 4.68711 4.83223 5.06343 5.08312 5.14615 5.14978 5.25884 5.28287 5.35045 5.53481 5.59881 5.68996 5.72229 5.81057 5.91461 6.02431 6.10273 6.16521 6.23282 6.47178 6.57212 7.14471 7.61275 7.69359 8.36851 8.60784 9.24907 10.86898 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.002887 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.340566 B = 9697.720938 C =10773.453706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 H 0.081 0.919 4 C 0.127 3.873 5 N -0.736 5.736 6 C 0.533 3.467 7 O -0.518 6.518 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 O -0.304 6.304 19 C 0.133 3.867 20 C -0.212 4.212 21 C -0.081 4.081 22 C -0.162 4.162 23 C -0.081 4.081 24 C -0.152 4.152 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.400 0.600 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 10.836 19.214 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.098 0.902 4 C 0.003 3.997 5 N -0.391 5.391 6 C 0.319 3.681 7 O -0.393 6.393 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 O -0.218 6.218 19 C 0.087 3.913 20 C -0.231 4.231 21 C -0.099 4.099 22 C -0.180 4.180 23 C -0.099 4.099 24 C -0.171 4.171 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.233 0.767 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.406 9.647 17.470 25.835 hybrid contribution 1.996 1.138 1.545 2.769 sum -14.410 10.786 19.015 26.183 Atomic orbital electron populations 1.22308 0.93841 1.04086 1.03310 1.22759 0.95112 0.96947 0.83696 0.90164 1.21399 0.81369 1.01977 0.94944 1.45901 1.06139 1.60853 1.26210 1.20306 0.89657 0.77046 0.81074 1.90702 1.69958 1.43313 1.35280 1.23526 0.93389 1.05806 1.07635 1.85380 1.04034 1.71848 1.22123 1.22912 0.91059 1.42908 1.11380 0.90871 1.24998 0.99646 0.94530 0.94462 1.70032 1.35227 1.34741 1.10325 0.86111 0.83007 0.78039 0.78303 1.19607 1.20559 1.20580 1.86202 1.80901 1.38217 1.16461 1.19061 0.95019 0.90295 0.86903 1.21333 1.07085 0.94437 1.00209 1.20956 0.97262 0.99356 0.92370 1.21074 1.02309 0.95913 0.98725 1.20998 0.97669 0.94016 0.97203 1.20522 1.03742 1.01479 0.91362 0.91406 0.90391 0.90827 0.90409 0.89499 0.76650 0.89240 0.89153 0.92249 0.85281 0.85909 0.86026 0.85405 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.17 37.16 0.34 -0.91 16 2 C 0.07 0.63 2.31 -26.73 -0.06 0.57 16 3 H 0.08 0.62 6.32 -51.93 -0.33 0.30 16 4 C 0.13 1.48 5.37 -4.04 -0.02 1.46 16 5 N -0.74 -10.27 5.45 -60.29 -0.33 -10.60 16 6 C 0.53 10.16 7.85 -10.99 -0.09 10.07 16 7 O -0.52 -11.87 15.86 5.56 0.09 -11.78 16 8 C -0.15 -3.16 6.16 36.01 0.22 -2.93 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 14 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 O -0.30 -3.28 9.55 -19.41 -0.19 -3.46 16 19 C 0.13 1.34 6.60 -39.21 -0.26 1.08 16 20 C -0.21 -1.81 8.24 -39.43 -0.32 -2.14 16 21 C -0.08 -0.63 10.04 -39.61 -0.40 -1.02 16 22 C -0.16 -1.23 10.04 -39.56 -0.40 -1.63 16 23 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 24 C -0.15 -1.46 9.99 -39.43 -0.39 -1.86 16 25 H 0.07 0.45 6.90 -51.93 -0.36 0.09 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 4.74 8.35 -40.82 -0.34 4.40 16 31 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 32 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.13 0.91 5.43 -52.49 -0.28 0.63 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -34.86 340.52 -8.46 -43.32 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.08 Total: 1.78 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.58 Total: -11.45 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.41 Total: -36.21 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.10 Total: -15.24 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.86 -8.46 -43.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113824609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.806 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds