Wall clock time and date at job start Tue Mar 31 2020 07:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.53003 * 109.47229 * 240.00892 * 2 1 3 5 5 N 1.46498 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.34773 * 120.00282 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99858 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00404 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.47321 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00002 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00073 * 180.02562 * 10 9 8 13 13 N 1.31632 * 120.00038 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00021 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47140 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47080 * 119.99712 * 14 12 10 17 17 H 1.48503 * 109.47165 * 239.99409 * 14 12 10 18 18 O 1.42894 * 109.47313 * 120.00299 * 2 1 3 19 19 C 1.35895 * 117.00154 * 275.09211 * 18 2 1 20 20 C 1.38737 * 120.05812 * 5.46272 * 19 18 2 21 21 C 1.38143 * 119.94711 * 180.29652 * 20 19 18 22 22 C 1.38267 * 120.05366 * 359.47123 * 21 20 19 23 23 C 1.38272 * 120.11130 * 0.50694 * 22 21 20 24 24 C 1.38141 * 120.05470 * 359.76792 * 23 22 21 25 25 H 1.08991 * 109.46872 * 299.99383 * 1 2 3 26 26 H 1.09002 * 109.47242 * 59.99772 * 1 2 3 27 27 H 1.09001 * 109.46584 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46831 * 299.99777 * 4 2 1 29 29 H 1.09002 * 109.47551 * 59.99525 * 4 2 1 30 30 H 0.97005 * 120.00040 * 359.97438 * 5 4 2 31 31 H 1.09001 * 109.46583 * 300.00247 * 8 6 5 32 32 H 1.09002 * 109.47126 * 59.99750 * 8 6 5 33 33 H 0.97005 * 119.99997 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.01964 * 0.02750 * 20 19 18 35 35 H 1.07993 * 119.97132 * 179.69852 * 21 20 19 36 36 H 1.08001 * 119.94562 * 180.25587 * 22 21 20 37 37 H 1.08000 * 119.97058 * 179.74941 * 23 22 21 38 38 H 1.08002 * 120.02545 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2494 5 7 3.5050 -0.7205 -1.2497 6 6 4.1790 -1.3043 -2.2603 7 8 3.5726 -1.8305 -3.1694 8 6 5.6860 -1.3043 -2.2604 9 16 6.2893 -2.1585 -3.7377 10 6 8.0273 -2.0126 -3.4871 11 1 8.4060 -1.5057 -2.6119 12 6 8.9096 -2.5482 -4.4150 13 7 8.4481 -3.1657 -5.4820 14 14 10.7522 -2.3929 -4.1496 15 1 11.0100 -1.6602 -2.8841 16 1 11.3567 -3.7471 -4.0701 17 1 11.3546 -1.6478 -5.2842 18 8 2.0064 -0.6737 1.1667 19 6 2.1107 0.0620 2.3045 20 6 1.6563 1.3726 2.3288 21 6 1.7691 2.1203 3.4849 22 6 2.3244 1.5600 4.6205 23 6 2.7777 0.2539 4.5990 24 6 2.6723 -0.4961 3.4438 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6767 -1.7488 -1.2495 29 1 1.6767 -0.2072 -2.1393 30 1 3.9901 -0.3000 -0.5224 31 1 6.0492 -0.2766 -2.2606 32 1 6.0494 -1.8179 -1.3703 33 1 9.0647 -3.5403 -6.1303 34 1 1.2187 1.8092 1.4432 35 1 1.4199 3.1421 3.5028 36 1 2.4080 2.1449 5.5246 37 1 3.2147 -0.1802 5.4862 38 1 3.0268 -1.5162 3.4274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113824609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:34 Heat of formation + Delta-G solvation = -78.269551 kcal Electronic energy + Delta-G solvation = -20288.156419 eV Core-core repulsion = 17028.070161 eV Total energy + Delta-G solvation = -3260.086258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39892 -40.49169 -38.60311 -35.94920 -34.59240 -33.36317 -31.81752 -30.85233 -30.54586 -27.75651 -26.87516 -24.31098 -23.36168 -21.95846 -21.69448 -19.84965 -19.38207 -17.93144 -17.65431 -17.04155 -16.88774 -16.61850 -16.45490 -16.17836 -15.73615 -15.49032 -14.85986 -14.63440 -14.52953 -14.35434 -14.10978 -13.72235 -13.47461 -13.31295 -13.16928 -13.09077 -12.91297 -12.61708 -12.44209 -12.18968 -11.97520 -11.71352 -11.58828 -11.16427 -11.00192 -10.29246 -10.19339 -9.91791 -9.14379 -8.67795 -8.35551 -6.13732 0.42064 0.51743 1.25673 1.41274 1.45991 1.56932 1.58166 2.10855 2.24468 2.27717 2.87755 2.98646 3.30517 3.53590 3.82197 3.91630 3.95623 4.04195 4.06203 4.25871 4.30739 4.40545 4.48625 4.51804 4.55156 4.65662 4.70529 4.81492 4.89145 5.11535 5.18144 5.35273 5.39910 5.41505 5.51635 5.63961 5.89120 6.19430 6.41160 6.47429 7.05833 7.17560 8.74007 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.002887 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.340566 B = 9697.720938 C =10773.453706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.078 3.922 3 H 0.097 0.903 4 C 0.124 3.876 5 N -0.712 5.712 6 C 0.535 3.465 7 O -0.563 6.563 8 C -0.130 4.130 9 S -0.148 6.148 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.273 1.273 18 O -0.324 6.324 19 C 0.113 3.887 20 C -0.216 4.216 21 C -0.086 4.086 22 C -0.166 4.166 23 C -0.086 4.086 24 C -0.174 4.174 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.413 0.587 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.271 0.729 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 12.924 21.394 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.022 3.978 3 H 0.115 0.885 4 C 0.001 3.999 5 N -0.366 5.366 6 C 0.321 3.679 7 O -0.441 6.441 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.198 1.198 18 O -0.239 6.239 19 C 0.068 3.932 20 C -0.235 4.235 21 C -0.104 4.104 22 C -0.184 4.184 23 C -0.104 4.104 24 C -0.193 4.193 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.249 0.751 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.151 11.766 19.706 28.064 hybrid contribution 1.800 0.541 0.991 2.124 sum -14.352 12.307 20.696 28.032 Atomic orbital electron populations 1.22290 0.92256 1.03997 1.04546 1.22747 0.96166 0.96921 0.81983 0.88496 1.21591 0.79403 1.01869 0.97074 1.45678 1.07339 1.58798 1.24785 1.20030 0.89015 0.77236 0.81621 1.90690 1.70443 1.45682 1.37319 1.23370 0.94653 1.05952 1.04175 1.85538 1.05300 1.73882 1.27405 1.23234 0.91191 1.43134 1.11861 0.89995 1.26142 1.05364 0.93776 0.93905 1.70190 1.37310 1.35801 1.11470 0.84888 0.75760 0.78348 0.78832 1.18086 1.19902 1.19816 1.86161 1.81446 1.39160 1.17103 1.19247 0.96158 0.91083 0.86720 1.21534 1.06880 0.93870 1.01201 1.21315 0.96675 1.00398 0.92004 1.21423 1.01456 0.95832 0.99647 1.21275 0.97470 0.94364 0.97303 1.20698 1.04675 1.01722 0.92180 0.90552 0.88697 0.91645 0.91792 0.88676 0.75091 0.87149 0.87578 0.91950 0.83881 0.83597 0.83848 0.83641 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.17 71.98 0.66 -1.46 16 2 C 0.08 1.26 2.31 30.60 0.07 1.33 16 3 H 0.10 1.25 6.32 -2.38 -0.02 1.23 16 4 C 0.12 2.76 5.37 86.38 0.46 3.23 16 5 N -0.71 -19.05 5.45 -463.05 -2.52 -21.57 16 6 C 0.54 20.28 7.85 87.66 0.69 20.97 16 7 O -0.56 -26.34 15.86 -3.04 -0.05 -26.39 16 8 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.74 5.49 84.86 0.47 1.20 16 13 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 14 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 15 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 O -0.32 -6.67 9.55 -92.36 -0.88 -7.56 16 19 C 0.11 2.14 6.60 22.51 0.15 2.29 16 20 C -0.22 -3.22 8.24 22.37 0.18 -3.04 16 21 C -0.09 -1.09 10.04 22.25 0.22 -0.87 16 22 C -0.17 -2.10 10.04 22.28 0.22 -1.88 16 23 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16 24 C -0.17 -3.23 9.99 22.37 0.22 -3.00 16 25 H 0.08 0.83 6.90 -2.39 -0.02 0.82 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.41 9.02 8.35 -92.70 -0.77 8.25 16 31 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 32 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 33 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 34 H 0.14 1.61 5.43 -2.91 -0.02 1.59 16 35 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -77.33 340.52 2.65 -74.67 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.30 Total: 18.55 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.66 Total: -18.08 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.24 Total: -77.65 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.93 Total: -33.94 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -77.33 2.65 -74.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113824609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.598 kcal (2) G-P(sol) polarization free energy of solvation -77.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds