Wall clock time and date at job start Tue Mar 31 2020 07:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 O 1.42905 * 109.46965 * 179.97438 * 3 2 1 5 5 C 1.35973 * 116.99645 * 179.97438 * 4 3 2 6 6 C 1.38724 * 119.98385 * 0.25301 * 5 4 3 7 7 C 1.38092 * 120.00868 * 180.25539 * 6 5 4 8 8 C 1.38847 * 119.98312 * 359.49314 * 7 6 5 9 9 N 1.40116 * 120.01049 * 180.27723 * 8 7 6 10 10 C 1.34781 * 119.99845 * 144.91011 * 9 8 7 11 11 O 1.21292 * 119.99910 * 4.61992 * 10 9 8 12 12 C 1.50697 * 120.00087 * 184.62318 * 10 9 8 13 13 S 1.80990 * 109.47383 * 179.97438 * 12 10 9 14 14 C 1.76201 * 100.00227 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99915 * 359.97438 * 14 13 12 16 16 C 1.38803 * 119.99877 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00284 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99697 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47220 * 59.99695 * 18 16 14 20 20 H 1.48498 * 109.46872 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46838 * 299.99850 * 18 16 14 22 22 C 1.38838 * 119.97638 * 0.25301 * 8 7 6 23 23 C 1.38096 * 119.98003 * 0.02562 * 22 8 7 24 24 H 1.09006 * 109.47097 * 60.00049 * 1 2 3 25 25 H 1.09002 * 109.47588 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47387 * 300.00989 * 1 2 3 27 27 H 1.08996 * 109.47184 * 239.99416 * 2 1 3 28 28 H 1.09000 * 109.46898 * 119.99552 * 2 1 3 29 29 H 1.08996 * 109.47486 * 59.99601 * 3 2 1 30 30 H 1.09000 * 109.46787 * 299.99620 * 3 2 1 31 31 H 1.07995 * 119.99489 * 359.97438 * 6 5 4 32 32 H 1.07993 * 120.00473 * 179.77103 * 7 6 5 33 33 H 0.96999 * 119.99983 * 324.91100 * 9 8 7 34 34 H 1.09004 * 109.46692 * 300.00092 * 12 10 9 35 35 H 1.09003 * 109.47248 * 59.99528 * 12 10 9 36 36 H 0.97000 * 120.00208 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.01518 * 180.02562 * 22 8 7 38 38 H 1.08004 * 119.98682 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0864 2.6539 0.0001 6 6 3.3305 3.8172 0.0044 7 6 3.9569 5.0478 -0.0014 8 6 5.3434 5.1207 -0.0009 9 7 5.9795 6.3692 -0.0009 10 6 7.1362 6.5361 0.6706 11 8 7.6699 5.5868 1.2046 12 6 7.7664 7.9022 0.7578 13 16 9.2973 7.8003 1.7179 14 6 9.8072 9.4859 1.6607 15 1 9.2081 10.2137 1.1337 16 6 10.9795 9.8781 2.2921 17 7 11.7099 8.9910 2.9340 18 14 11.5204 11.6651 2.2309 19 1 10.4759 12.5200 2.8501 20 1 12.7946 11.8224 2.9771 21 1 11.7203 12.0735 0.8172 22 6 6.0993 3.9562 0.0002 23 6 5.4716 2.7261 0.0002 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.2521 3.7602 0.0077 32 1 3.3683 5.9533 -0.0018 33 1 5.5875 7.1133 -0.4841 34 1 7.9899 8.2640 -0.2458 35 1 7.0765 8.5901 1.2467 36 1 12.5289 9.2652 3.3756 37 1 7.1778 4.0122 0.0010 38 1 6.0595 1.8201 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120391165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:42 Heat of formation + Delta-G solvation = -78.866456 kcal Electronic energy + Delta-G solvation = -19884.433708 eV Core-core repulsion = 16624.321566 eV Total energy + Delta-G solvation = -3260.112142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63659 -40.58174 -38.43139 -35.63673 -34.59343 -34.56497 -32.05467 -31.52654 -29.14110 -27.67593 -27.29536 -24.21840 -23.39609 -22.38660 -21.43894 -19.90486 -19.21807 -18.53810 -17.95640 -17.20726 -16.91663 -16.87633 -16.43198 -16.13290 -15.39643 -15.07310 -15.02556 -14.83134 -14.55068 -14.44084 -13.85358 -13.78192 -13.51274 -13.35650 -13.17021 -12.90530 -12.86330 -12.63529 -12.44815 -12.17773 -11.76358 -11.75281 -11.58778 -11.12885 -11.03620 -10.80202 -10.29122 -10.00788 -8.76682 -8.65243 -8.34529 -6.12963 0.28516 0.32864 1.24288 1.44464 1.45490 1.53611 1.56561 2.13448 2.26614 2.28156 2.77353 2.99797 3.29285 3.76853 3.86554 3.90364 3.98065 4.05245 4.24991 4.27954 4.32062 4.39192 4.48356 4.52421 4.58231 4.62589 4.80727 4.92546 5.01930 5.14374 5.20260 5.28140 5.34246 5.38162 5.42051 5.45031 5.84626 6.19717 6.39762 6.46701 7.06735 7.12920 8.74338 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.061064 B = 0.002261 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.425745 B =12378.845728 C =12644.794067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.333 6.333 5 C 0.108 3.892 6 C -0.185 4.185 7 C -0.095 4.095 8 C 0.095 3.905 9 N -0.654 5.654 10 C 0.533 3.467 11 O -0.544 6.544 12 C -0.128 4.128 13 S -0.149 6.149 14 C -0.547 4.547 15 H 0.085 0.915 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.262 1.262 22 C -0.101 4.101 23 C -0.148 4.148 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.428 0.572 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.271 0.729 37 H 0.120 0.880 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.921 -10.592 -9.593 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.248 6.248 5 C 0.062 3.938 6 C -0.204 4.204 7 C -0.115 4.115 8 C 0.001 3.999 9 N -0.302 5.302 10 C 0.320 3.680 11 O -0.420 6.420 12 C -0.279 4.279 13 S 0.078 5.922 14 C -0.695 4.695 15 H 0.103 0.897 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.186 1.186 20 H -0.205 1.205 21 H -0.186 1.186 22 C -0.121 4.121 23 C -0.168 4.168 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.268 0.732 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.799 -12.342 -8.598 28.154 hybrid contribution 0.094 2.240 -0.556 2.310 sum -23.705 -10.102 -9.154 27.345 Atomic orbital electron populations 1.21680 0.92723 1.03153 1.02789 1.21506 0.97217 0.94070 1.03289 1.23155 0.76914 0.99909 1.02503 1.86056 1.23073 1.26815 1.88807 1.19043 0.91920 0.85036 0.97785 1.21326 1.01264 0.90792 1.06983 1.21003 0.91281 0.99358 0.99820 1.17887 0.92291 0.84885 1.04822 1.43226 1.23371 1.12026 1.51610 1.20293 0.80516 0.90136 0.77043 1.90699 1.62204 1.42756 1.46362 1.23354 1.01617 0.96784 1.06135 1.85618 1.23102 1.14578 1.68893 1.23184 1.12021 0.93971 1.40328 0.89670 1.26134 0.95349 1.03895 0.93791 1.70174 1.14889 1.36533 1.33186 0.85001 0.77637 0.76365 0.78979 1.18622 1.20521 1.18614 1.21089 1.00497 0.91396 0.99163 1.20396 0.92271 0.98000 1.06086 0.91640 0.91148 0.91896 0.91175 0.91498 0.91100 0.90600 0.82090 0.82033 0.73226 0.86587 0.86612 0.92002 0.86203 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 71.98 0.71 -0.29 16 2 C -0.12 -1.35 6.30 30.59 0.19 -1.16 16 3 C 0.05 0.66 4.74 71.98 0.34 1.00 16 4 O -0.33 -7.18 10.14 -93.25 -0.95 -8.12 16 5 C 0.11 2.53 6.69 22.50 0.15 2.68 16 6 C -0.18 -3.44 9.03 22.35 0.20 -3.24 16 7 C -0.09 -1.85 9.96 22.38 0.22 -1.63 16 8 C 0.09 2.54 6.30 38.11 0.24 2.78 16 9 N -0.65 -17.08 5.34 -303.39 -1.62 -18.70 16 10 C 0.53 19.47 7.69 87.66 0.67 20.15 16 11 O -0.54 -24.91 13.30 -3.07 -0.04 -24.95 16 12 C -0.13 -4.89 6.16 71.23 0.44 -4.45 16 13 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 14 C -0.55 -30.85 9.50 67.96 0.65 -30.20 16 15 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 16 C 0.01 0.74 5.49 84.86 0.47 1.21 16 17 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 18 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 C -0.10 -3.15 8.69 22.38 0.19 -2.95 16 23 C -0.15 -4.09 9.98 22.35 0.22 -3.87 16 24 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 25 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 30 H 0.08 0.78 7.67 -2.39 -0.02 0.76 16 31 H 0.16 1.90 6.29 -2.91 -0.02 1.88 16 32 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.43 7.44 8.82 -92.71 -0.82 6.62 16 34 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.12 4.40 6.22 -2.91 -0.02 4.38 16 38 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -76.66 339.77 3.50 -73.15 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.25 Total: 18.25 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 4.71 Total: -19.97 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.33 Total: -74.27 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.99 Total: -33.07 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -76.66 3.50 -73.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120391165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.712 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds