Wall clock time and date at job start Tue Mar 31 2020 07:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99939 * 2 1 4 4 C 1.38490 * 120.08184 * 0.02562 * 3 2 1 5 5 C 1.38297 * 120.02429 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.18926 * 359.97438 * 5 4 3 7 7 C 1.38202 * 120.17081 * 0.02562 * 6 5 4 8 8 C 1.38801 * 119.96950 * 359.69847 * 7 6 5 9 9 S 1.76191 * 120.09722 * 180.27916 * 8 7 6 10 10 C 1.81401 * 103.00137 * 0.29436 * 9 8 7 11 11 C 1.50693 * 109.47449 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00034 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99967 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.47053 * 324.99551 * 14 13 11 16 16 C 1.53001 * 109.47042 * 84.99544 * 14 13 11 17 17 C 1.50701 * 109.46952 * 204.99534 * 14 13 11 18 18 H 1.07995 * 120.00047 * 359.97438 * 17 14 13 19 19 C 1.37886 * 119.99675 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99885 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 119.99614 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47237 * 119.99930 * 21 19 17 24 24 H 1.48504 * 109.46814 * 239.99778 * 21 19 17 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99755 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99810 * 1 2 3 28 28 H 1.07998 * 119.98628 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.90715 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.91749 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.01995 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46955 * 300.00279 * 10 9 8 33 33 H 1.08998 * 109.47052 * 59.99533 * 10 9 8 34 34 H 0.96996 * 120.00135 * 359.97438 * 13 11 10 35 35 H 1.08994 * 109.47208 * 299.99809 * 16 14 13 36 36 H 1.08998 * 109.47507 * 60.00261 * 16 14 13 37 37 H 1.09007 * 109.47007 * 180.02562 * 16 14 13 38 38 H 0.97002 * 119.99396 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3744 0.0005 5 6 1.9230 3.6060 0.0000 6 6 3.3036 3.6816 -0.0005 7 6 4.0624 2.5265 -0.0011 8 6 3.4382 1.2868 0.0053 9 16 4.4023 -0.1879 0.0120 10 6 6.1050 0.4378 0.0173 11 6 7.0666 -0.7225 0.0227 12 8 6.6448 -1.8596 0.0235 13 7 8.3952 -0.4966 0.0278 14 6 9.3301 -1.6246 0.0337 15 1 8.9113 -2.4405 0.6230 16 6 9.5645 -2.1002 -1.4015 17 6 10.6396 -1.1886 0.6387 18 1 10.7633 -0.1728 0.9838 19 6 11.6798 -2.0866 0.7515 20 7 11.5289 -3.3238 0.3317 21 14 13.3028 -1.5464 1.5020 22 1 13.2158 -0.1163 1.8928 23 1 13.5920 -2.3713 2.7024 24 1 14.3910 -1.7218 0.5069 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2153 2.3191 0.0014 29 1 1.3342 4.5114 0.0000 30 1 3.7903 4.6457 -0.0014 31 1 5.1406 2.5884 -0.0019 32 1 6.2722 1.0436 -0.8733 33 1 6.2654 1.0473 0.9066 34 1 8.7326 0.4128 0.0276 35 1 8.6174 -2.4155 -1.8391 36 1 9.9832 -1.2844 -1.9908 37 1 10.2597 -2.9398 -1.3971 38 1 12.2606 -3.9556 0.4114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120862941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:49 Heat of formation + Delta-G solvation = -47.769418 kcal Electronic energy + Delta-G solvation = -20410.104718 eV Core-core repulsion = 17151.341044 eV Total energy + Delta-G solvation = -3258.763673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18438 -38.86568 -37.51662 -34.85431 -32.49546 -31.58560 -30.52023 -30.05918 -28.08024 -27.40578 -25.27275 -23.07182 -22.39905 -21.30367 -19.57891 -18.68339 -17.39350 -16.81372 -16.26531 -15.97922 -15.94786 -15.33941 -15.14015 -14.99830 -14.55974 -14.02675 -13.84359 -13.51144 -13.19443 -12.88550 -12.57357 -12.36980 -12.26983 -11.95534 -11.67182 -11.34004 -11.24484 -11.06490 -10.97021 -10.74048 -10.32392 -10.26173 -9.96436 -9.85320 -9.21354 -9.06678 -8.67500 -8.58514 -7.99473 -7.16476 -6.14571 -4.24148 1.00332 1.21526 1.45945 2.54120 3.08536 3.22177 3.23816 3.30446 3.32943 3.48890 3.99158 4.34933 4.56468 4.65810 4.85531 4.91578 5.00415 5.10824 5.11548 5.17759 5.20919 5.25898 5.33991 5.46874 5.55599 5.92652 6.05311 6.27358 6.50353 6.80099 6.94179 7.11982 7.14437 7.39076 7.50429 7.65637 7.87851 8.11947 8.56628 8.73114 9.01611 9.43175 10.91499 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031637 B = 0.002907 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.830191 B = 9630.763825 C =10244.434953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.142 3.858 4 C -0.192 4.192 5 C -0.093 4.093 6 C -0.136 4.136 7 C -0.102 4.102 8 C -0.132 4.132 9 S -0.004 6.004 10 C -0.159 4.159 11 C 0.519 3.481 12 O -0.535 6.535 13 N -0.702 5.702 14 C 0.265 3.735 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.882 5.882 21 Si 0.903 3.097 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.390 0.610 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.271 13.975 -1.349 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.091 3.909 4 C -0.212 4.212 5 C -0.115 4.115 6 C -0.156 4.156 7 C -0.127 4.127 8 C -0.245 4.245 9 S 0.241 5.759 10 C -0.311 4.311 11 C 0.301 3.699 12 O -0.413 6.413 13 N -0.351 5.351 14 C 0.163 3.837 15 H 0.068 0.932 16 C -0.207 4.207 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.222 0.778 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.585 11.493 -1.359 22.749 hybrid contribution 1.238 2.380 0.360 2.707 sum -18.347 13.873 -0.999 23.023 Atomic orbital electron populations 1.23075 0.78400 1.04155 1.01118 1.86197 1.21194 1.26156 1.88288 1.18343 0.90187 0.84816 0.97572 1.21130 0.99826 0.92031 1.08254 1.20916 0.94620 0.96865 0.99071 1.20970 0.93886 0.98021 1.02721 1.21070 0.99940 0.90798 1.00891 1.21540 0.94340 0.99277 1.09373 1.86549 0.95450 1.02764 1.91124 1.23985 0.97071 1.03014 1.06996 1.19405 0.83519 0.88790 0.78138 1.90713 1.77522 1.22792 1.50296 1.46460 1.04765 1.11761 1.72090 1.18809 0.86439 0.84272 0.94149 0.93174 1.22087 0.99398 1.01916 0.97251 1.21238 0.96880 0.97763 1.41428 0.91975 1.24896 0.98917 0.94764 0.95157 1.69913 1.32560 1.03678 1.45806 0.86377 0.83015 0.78710 0.78892 1.19738 1.20838 1.20854 0.88047 0.92698 0.92697 0.85197 0.85753 0.85654 0.85184 0.87195 0.87125 0.77768 0.96525 0.95410 0.89039 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.88 9.87 -19.77 -0.20 -4.08 16 3 C 0.14 1.80 6.69 -39.07 -0.26 1.54 16 4 C -0.19 -1.89 9.04 -39.47 -0.36 -2.25 16 5 C -0.09 -0.84 10.04 -39.55 -0.40 -1.23 16 6 C -0.14 -1.30 10.04 -39.58 -0.40 -1.69 16 7 C -0.10 -1.16 9.36 -39.39 -0.37 -1.53 16 8 C -0.13 -1.80 6.12 -38.95 -0.24 -2.03 16 9 S 0.00 -0.06 20.54 -107.50 -2.21 -2.27 16 10 C -0.16 -2.34 4.82 36.00 0.17 -2.16 16 11 C 0.52 10.38 7.81 -10.99 -0.09 10.30 16 12 O -0.54 -13.03 15.53 5.56 0.09 -12.95 16 13 N -0.70 -14.41 5.07 -54.93 -0.28 -14.69 16 14 C 0.26 6.72 2.56 -69.08 -0.18 6.55 16 15 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 16 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 17 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -24.83 11.32 55.43 0.63 -24.21 16 21 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 29 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 30 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.13 1.27 5.88 -52.49 -0.31 0.97 16 32 H 0.11 1.33 7.74 -51.92 -0.40 0.93 16 33 H 0.11 1.36 7.76 -51.93 -0.40 0.96 16 34 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.59 334.54 -8.07 -40.66 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.95 Total: 4.33 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.17 Total: -7.35 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.11 Total: -17.02 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.21 Total: -2.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.59 -8.07 -40.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120862941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.114 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds