Wall clock time and date at job start Tue Mar 31 2020 07:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99939 * 2 1 4 4 C 1.38490 * 120.08184 * 0.02562 * 3 2 1 5 5 C 1.38297 * 120.02429 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.18926 * 359.97438 * 5 4 3 7 7 C 1.38202 * 120.17081 * 0.02562 * 6 5 4 8 8 C 1.38801 * 119.96950 * 359.69847 * 7 6 5 9 9 S 1.76191 * 120.09722 * 180.27916 * 8 7 6 10 10 C 1.81401 * 103.00137 * 0.29436 * 9 8 7 11 11 C 1.50693 * 109.47449 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00034 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99967 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.47053 * 324.99551 * 14 13 11 16 16 C 1.53001 * 109.47042 * 84.99544 * 14 13 11 17 17 C 1.50701 * 109.46952 * 204.99534 * 14 13 11 18 18 H 1.07995 * 120.00047 * 359.97438 * 17 14 13 19 19 C 1.37886 * 119.99675 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99885 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 119.99614 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47237 * 119.99930 * 21 19 17 24 24 H 1.48504 * 109.46814 * 239.99778 * 21 19 17 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99755 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99810 * 1 2 3 28 28 H 1.07998 * 119.98628 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.90715 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.91749 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.01995 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46955 * 300.00279 * 10 9 8 33 33 H 1.08998 * 109.47052 * 59.99533 * 10 9 8 34 34 H 0.96996 * 120.00135 * 359.97438 * 13 11 10 35 35 H 1.08994 * 109.47208 * 299.99809 * 16 14 13 36 36 H 1.08998 * 109.47507 * 60.00261 * 16 14 13 37 37 H 1.09007 * 109.47007 * 180.02562 * 16 14 13 38 38 H 0.97002 * 119.99396 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3744 0.0005 5 6 1.9230 3.6060 0.0000 6 6 3.3036 3.6816 -0.0005 7 6 4.0624 2.5265 -0.0011 8 6 3.4382 1.2868 0.0053 9 16 4.4023 -0.1879 0.0120 10 6 6.1050 0.4378 0.0173 11 6 7.0666 -0.7225 0.0227 12 8 6.6448 -1.8596 0.0235 13 7 8.3952 -0.4966 0.0278 14 6 9.3301 -1.6246 0.0337 15 1 8.9113 -2.4405 0.6230 16 6 9.5645 -2.1002 -1.4015 17 6 10.6396 -1.1886 0.6387 18 1 10.7633 -0.1728 0.9838 19 6 11.6798 -2.0866 0.7515 20 7 11.5289 -3.3238 0.3317 21 14 13.3028 -1.5464 1.5020 22 1 13.2158 -0.1163 1.8928 23 1 13.5920 -2.3713 2.7024 24 1 14.3910 -1.7218 0.5069 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2153 2.3191 0.0014 29 1 1.3342 4.5114 0.0000 30 1 3.7903 4.6457 -0.0014 31 1 5.1406 2.5884 -0.0019 32 1 6.2722 1.0436 -0.8733 33 1 6.2654 1.0473 0.9066 34 1 8.7326 0.4128 0.0276 35 1 8.6174 -2.4155 -1.8391 36 1 9.9832 -1.2844 -1.9908 37 1 10.2597 -2.9398 -1.3971 38 1 12.2606 -3.9556 0.4114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120862941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:49 Heat of formation + Delta-G solvation = -69.275532 kcal Electronic energy + Delta-G solvation = -20411.037293 eV Core-core repulsion = 17151.341044 eV Total energy + Delta-G solvation = -3259.696248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97239 -40.56606 -38.29356 -36.77083 -34.39846 -32.54093 -31.79830 -31.04442 -29.67089 -28.09711 -27.34701 -23.88581 -23.48505 -22.83774 -21.32362 -19.70542 -18.80290 -18.00592 -17.63678 -17.16951 -17.01245 -16.72861 -16.47031 -16.16397 -15.86060 -15.21921 -14.88562 -14.61731 -14.46491 -14.28815 -14.12419 -13.75237 -13.51072 -13.04427 -12.90705 -12.85718 -12.72394 -12.66456 -12.29129 -12.12680 -12.02091 -11.92592 -11.11075 -11.03511 -10.92506 -10.72356 -10.61413 -9.83161 -9.46709 -8.27521 -8.18361 -6.36128 0.21477 0.32862 0.43526 1.44924 1.45888 1.47792 1.57968 1.66144 2.32558 2.38654 2.55672 2.72322 3.12484 3.82414 3.85689 4.00167 4.00294 4.16790 4.25874 4.39400 4.39790 4.41961 4.57811 4.72662 4.73747 4.83348 4.90917 5.07447 5.17968 5.34413 5.40578 5.53297 5.57439 5.65719 5.80937 5.86866 6.07621 6.40268 6.71256 6.84462 7.29700 7.46492 8.88389 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031637 B = 0.002907 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.830191 B = 9630.763825 C =10244.434953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.122 3.878 4 C -0.193 4.193 5 C -0.085 4.085 6 C -0.138 4.138 7 C -0.108 4.108 8 C -0.151 4.151 9 S -0.081 6.081 10 C -0.132 4.132 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.696 5.696 14 C 0.271 3.729 15 H -0.002 1.002 16 C -0.135 4.135 17 C -0.546 4.546 18 H 0.077 0.923 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.975 3.025 22 H -0.258 1.258 23 H -0.285 1.285 24 H -0.279 1.279 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.409 0.591 35 H 0.011 0.989 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.781 17.881 -1.135 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.071 3.929 4 C -0.213 4.213 5 C -0.106 4.106 6 C -0.158 4.158 7 C -0.132 4.132 8 C -0.264 4.264 9 S 0.162 5.838 10 C -0.283 4.283 11 C 0.300 3.700 12 O -0.466 6.466 13 N -0.346 5.346 14 C 0.167 3.833 15 H 0.016 0.984 16 C -0.194 4.194 17 C -0.584 4.584 18 H 0.095 0.905 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.799 3.201 22 H -0.181 1.181 23 H -0.211 1.211 24 H -0.205 1.205 25 H 0.128 0.872 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.245 0.755 35 H 0.030 0.970 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.123 15.472 -1.148 25.409 hybrid contribution 1.228 1.217 0.288 1.753 sum -18.895 16.688 -0.861 25.224 Atomic orbital electron populations 1.23347 0.76277 1.05362 1.02528 1.86161 1.23610 1.26936 1.88496 1.18688 0.90270 0.85736 0.98165 1.21475 1.01092 0.91411 1.07359 1.21410 0.94865 0.97699 0.96613 1.21366 0.94299 0.98507 1.01599 1.21346 1.00915 0.90518 1.00412 1.21493 0.94392 0.98141 1.12396 1.86767 0.97661 1.06866 1.92522 1.23747 0.94203 1.00519 1.09835 1.20207 0.83721 0.89671 0.76403 1.90694 1.78341 1.25471 1.52072 1.46150 1.04682 1.11510 1.72220 1.18392 0.87013 0.84501 0.93357 0.98366 1.21911 0.98516 1.01527 0.97421 1.21572 0.97044 0.98440 1.41338 0.90504 1.25835 1.02695 0.94692 0.95515 1.70068 1.33702 1.04948 1.46946 0.85258 0.78293 0.78844 0.77696 1.18130 1.21104 1.20451 0.87160 0.91219 0.91175 0.82676 0.82323 0.82755 0.83922 0.84042 0.84229 0.75500 0.97025 0.93759 0.91449 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.67 9.87 -93.65 -0.92 -9.60 16 3 C 0.12 3.00 6.69 22.60 0.15 3.15 16 4 C -0.19 -3.29 9.04 22.34 0.20 -3.09 16 5 C -0.09 -1.18 10.04 22.29 0.22 -0.96 16 6 C -0.14 -2.10 10.04 22.27 0.22 -1.88 16 7 C -0.11 -2.19 9.36 22.40 0.21 -1.98 16 8 C -0.15 -4.01 6.12 22.68 0.14 -3.87 16 9 S -0.08 -2.70 20.54 -56.49 -1.16 -3.86 16 10 C -0.13 -3.75 4.82 71.23 0.34 -3.41 16 11 C 0.51 20.83 7.81 87.65 0.68 21.52 16 12 O -0.58 -29.86 15.53 -3.02 -0.05 -29.91 16 13 N -0.70 -28.43 5.07 -446.09 -2.26 -30.70 16 14 C 0.27 14.09 2.56 44.24 0.11 14.21 16 15 H 0.00 -0.10 7.58 -2.38 -0.02 -0.12 16 16 C -0.13 -6.90 9.26 71.98 0.67 -6.24 16 17 C -0.55 -28.65 8.73 25.60 0.22 -28.42 16 18 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.01 0.68 5.30 84.66 0.45 1.13 16 20 N -0.92 -52.94 11.32 21.45 0.24 -52.70 16 21 Si 0.97 41.76 29.54 68.60 2.03 43.78 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 27 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 28 H 0.16 1.73 6.30 -2.91 -0.02 1.71 16 29 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 30 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.14 2.36 5.88 -2.91 -0.02 2.35 16 32 H 0.14 3.10 7.74 -2.39 -0.02 3.08 16 33 H 0.14 3.13 7.76 -2.39 -0.02 3.11 16 34 H 0.41 13.42 8.54 -92.71 -0.79 12.63 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 3.78 6.07 -2.38 -0.01 3.76 16 38 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -74.79 334.54 2.91 -71.88 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.29 Total: 19.55 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.74 Total: -8.46 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.02 Total: -83.39 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.97 Total: -39.50 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -1.16 Total: -3.86 kcal Total: -74.79 2.91 -71.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120862941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.608 kcal (2) G-P(sol) polarization free energy of solvation -74.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds