Wall clock time and date at job start Tue Mar 31 2020 07:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38483 * 120.08113 * 359.97438 * 3 2 1 5 5 C 1.38309 * 120.02498 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.18598 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16856 * 0.02562 * 6 5 4 8 8 C 1.38797 * 119.97437 * 359.69844 * 7 6 5 9 9 S 1.76198 * 120.09536 * 180.28120 * 8 7 6 10 10 C 1.81397 * 103.00185 * 0.29118 * 9 8 7 11 11 C 1.50699 * 109.46967 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00581 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99606 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99885 * 180.02562 * 13 11 10 15 15 H 1.09010 * 109.47030 * 34.99970 * 14 13 11 16 16 C 1.52992 * 109.47299 * 275.00098 * 14 13 11 17 17 C 1.50697 * 109.47001 * 154.99634 * 14 13 11 18 18 H 1.07999 * 120.00235 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99770 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00320 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99977 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46913 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47023 * 120.00047 * 21 19 17 24 24 H 1.48500 * 109.46899 * 240.00199 * 21 19 17 25 25 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 26 26 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 28 28 H 1.08005 * 119.98852 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.90467 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.91062 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.01637 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47504 * 300.00456 * 10 9 8 33 33 H 1.09007 * 109.46906 * 60.00543 * 10 9 8 34 34 H 0.97001 * 119.99861 * 0.02562 * 13 11 10 35 35 H 1.09004 * 109.47355 * 179.97438 * 16 14 13 36 36 H 1.08997 * 109.47010 * 300.00206 * 16 14 13 37 37 H 1.09002 * 109.47291 * 59.99857 * 16 14 13 38 38 H 0.96990 * 120.00187 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3743 -0.0005 5 6 1.9230 3.6061 -0.0011 6 6 3.3036 3.6816 -0.0005 7 6 4.0623 2.5265 0.0000 8 6 3.4381 1.2868 0.0063 9 16 4.4024 -0.1879 0.0145 10 6 6.1050 0.4378 0.0208 11 6 7.0665 -0.7226 0.0288 12 8 6.6448 -1.8596 0.0297 13 7 8.3953 -0.4966 0.0351 14 6 9.3301 -1.6246 0.0423 15 1 8.9167 -2.4429 -0.5475 16 6 9.5514 -2.0943 1.4814 17 6 10.6450 -1.1910 -0.5526 18 1 10.7719 -0.1766 -0.9008 19 6 11.6865 -2.0892 -0.6513 20 7 11.5322 -3.3244 -0.2268 21 14 13.3168 -1.5516 -1.3880 22 1 13.2333 -0.1233 -1.7857 23 1 14.3952 -1.7224 -0.3815 24 1 13.6180 -2.3816 -2.5820 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2153 2.3191 -0.0005 29 1 1.3342 4.5114 -0.0019 30 1 3.7903 4.6457 -0.0005 31 1 5.1406 2.5883 0.0000 32 1 6.2730 1.0432 -0.8698 33 1 6.2647 1.0476 0.9101 34 1 8.7326 0.4129 0.0348 35 1 10.2466 -2.9339 1.4867 36 1 9.9647 -1.2761 2.0711 37 1 8.6003 -2.4079 1.9116 38 1 12.2647 -3.9562 -0.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120863104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:52 Heat of formation + Delta-G solvation = -47.751655 kcal Electronic energy + Delta-G solvation = -20410.136188 eV Core-core repulsion = 17151.373285 eV Total energy + Delta-G solvation = -3258.762903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18474 -38.86577 -37.51682 -34.85498 -32.49508 -31.58499 -30.52045 -30.05906 -28.07967 -27.40585 -25.27323 -23.07195 -22.39877 -21.30345 -19.57874 -18.68334 -17.39352 -16.81355 -16.26518 -15.97855 -15.94905 -15.33962 -15.13628 -15.00222 -14.55946 -14.02648 -13.84311 -13.51158 -13.19536 -12.88615 -12.57225 -12.37013 -12.27003 -11.95495 -11.67194 -11.34001 -11.24486 -11.06510 -10.97028 -10.73986 -10.32394 -10.26154 -9.96436 -9.85304 -9.21375 -9.06654 -8.67519 -8.58463 -7.99457 -7.16494 -6.14502 -4.24160 1.00314 1.21548 1.45939 2.54107 3.08536 3.22183 3.23815 3.30436 3.32938 3.48892 3.99136 4.34919 4.56446 4.65836 4.85533 4.91591 5.00411 5.11013 5.11352 5.17754 5.20896 5.25888 5.33994 5.46853 5.55570 5.92656 6.05322 6.27348 6.50348 6.80104 6.94208 7.12054 7.14436 7.39095 7.50431 7.65645 7.87879 8.12037 8.56617 8.73115 9.01611 9.43200 10.91549 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.002907 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.274500 B = 9631.062722 C =10245.891125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.142 3.858 4 C -0.192 4.192 5 C -0.093 4.093 6 C -0.136 4.136 7 C -0.102 4.102 8 C -0.132 4.132 9 S -0.004 6.004 10 C -0.159 4.159 11 C 0.519 3.481 12 O -0.535 6.535 13 N -0.702 5.702 14 C 0.265 3.735 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.882 5.882 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.390 0.610 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.016 0.984 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.285 13.979 1.137 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.091 3.909 4 C -0.212 4.212 5 C -0.115 4.115 6 C -0.156 4.156 7 C -0.127 4.127 8 C -0.245 4.245 9 S 0.241 5.759 10 C -0.311 4.311 11 C 0.301 3.699 12 O -0.413 6.413 13 N -0.351 5.351 14 C 0.163 3.837 15 H 0.068 0.932 16 C -0.207 4.207 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.222 0.778 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.598 11.498 1.156 22.751 hybrid contribution 1.242 2.379 -0.358 2.707 sum -18.356 13.876 0.798 23.025 Atomic orbital electron populations 1.23075 0.78400 1.04156 1.01118 1.86197 1.21193 1.26157 1.88288 1.18340 0.90187 0.84817 0.97571 1.21133 0.99826 0.92032 1.08255 1.20917 0.94620 0.96864 0.99071 1.20968 0.93886 0.98020 1.02721 1.21069 0.99942 0.90799 1.00890 1.21539 0.94339 0.99275 1.09372 1.86550 0.95450 1.02767 1.91125 1.23987 0.97071 1.03014 1.06996 1.19408 0.83521 0.88789 0.78135 1.90712 1.77519 1.22790 1.50297 1.46462 1.04763 1.11759 1.72095 1.18806 0.86432 0.84284 0.94147 0.93178 1.22087 0.99383 1.01921 0.97266 1.21238 0.96528 0.97896 1.41642 0.91975 1.24896 0.98939 0.94765 0.95126 1.69909 1.32524 1.03777 1.45759 0.86379 0.83070 0.78705 0.78852 1.19738 1.20853 1.20836 0.92691 0.88047 0.92703 0.85196 0.85754 0.85654 0.85184 0.87127 0.87191 0.77768 0.89028 0.95413 0.96527 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.88 9.87 -19.77 -0.20 -4.08 16 3 C 0.14 1.80 6.69 -39.07 -0.26 1.54 16 4 C -0.19 -1.90 9.04 -39.47 -0.36 -2.25 16 5 C -0.09 -0.84 10.04 -39.54 -0.40 -1.23 16 6 C -0.14 -1.30 10.04 -39.59 -0.40 -1.69 16 7 C -0.10 -1.16 9.36 -39.39 -0.37 -1.53 16 8 C -0.13 -1.79 6.12 -38.96 -0.24 -2.03 16 9 S 0.00 -0.06 20.54 -107.50 -2.21 -2.27 16 10 C -0.16 -2.34 4.82 36.00 0.17 -2.16 16 11 C 0.52 10.38 7.81 -10.98 -0.09 10.30 16 12 O -0.54 -13.03 15.53 5.56 0.09 -12.95 16 13 N -0.70 -14.41 5.07 -54.93 -0.28 -14.69 16 14 C 0.26 6.72 2.56 -69.09 -0.18 6.55 16 15 H 0.05 1.47 7.58 -51.92 -0.39 1.08 16 16 C -0.15 -3.69 9.26 37.15 0.34 -3.34 16 17 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -24.84 11.32 55.43 0.63 -24.21 16 21 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.13 0.94 6.30 -52.48 -0.33 0.61 16 29 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.27 5.88 -52.48 -0.31 0.97 16 32 H 0.11 1.36 7.74 -51.92 -0.40 0.96 16 33 H 0.11 1.33 7.76 -51.92 -0.40 0.93 16 34 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 35 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.59 334.54 -8.07 -40.65 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.95 Total: 4.33 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.17 Total: -7.35 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.35 Total: -38.90 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.11 Total: -17.02 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.21 Total: -2.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.59 -8.07 -40.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120863104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.097 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds