Wall clock time and date at job start Tue Mar 31 2020 07:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38483 * 120.08113 * 359.97438 * 3 2 1 5 5 C 1.38309 * 120.02498 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.18598 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16856 * 0.02562 * 6 5 4 8 8 C 1.38797 * 119.97437 * 359.69844 * 7 6 5 9 9 S 1.76198 * 120.09536 * 180.28120 * 8 7 6 10 10 C 1.81397 * 103.00185 * 0.29118 * 9 8 7 11 11 C 1.50699 * 109.46967 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00581 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99606 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99885 * 180.02562 * 13 11 10 15 15 H 1.09010 * 109.47030 * 34.99970 * 14 13 11 16 16 C 1.52992 * 109.47299 * 275.00098 * 14 13 11 17 17 C 1.50697 * 109.47001 * 154.99634 * 14 13 11 18 18 H 1.07999 * 120.00235 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99770 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00320 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99977 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46913 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47023 * 120.00047 * 21 19 17 24 24 H 1.48500 * 109.46899 * 240.00199 * 21 19 17 25 25 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 26 26 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 28 28 H 1.08005 * 119.98852 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.90467 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.91062 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.01637 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47504 * 300.00456 * 10 9 8 33 33 H 1.09007 * 109.46906 * 60.00543 * 10 9 8 34 34 H 0.97001 * 119.99861 * 0.02562 * 13 11 10 35 35 H 1.09004 * 109.47355 * 179.97438 * 16 14 13 36 36 H 1.08997 * 109.47010 * 300.00206 * 16 14 13 37 37 H 1.09002 * 109.47291 * 59.99857 * 16 14 13 38 38 H 0.96990 * 120.00187 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3743 -0.0005 5 6 1.9230 3.6061 -0.0011 6 6 3.3036 3.6816 -0.0005 7 6 4.0623 2.5265 0.0000 8 6 3.4381 1.2868 0.0063 9 16 4.4024 -0.1879 0.0145 10 6 6.1050 0.4378 0.0208 11 6 7.0665 -0.7226 0.0288 12 8 6.6448 -1.8596 0.0297 13 7 8.3953 -0.4966 0.0351 14 6 9.3301 -1.6246 0.0423 15 1 8.9167 -2.4429 -0.5475 16 6 9.5514 -2.0943 1.4814 17 6 10.6450 -1.1910 -0.5526 18 1 10.7719 -0.1766 -0.9008 19 6 11.6865 -2.0892 -0.6513 20 7 11.5322 -3.3244 -0.2268 21 14 13.3168 -1.5516 -1.3880 22 1 13.2333 -0.1233 -1.7857 23 1 14.3952 -1.7224 -0.3815 24 1 13.6180 -2.3816 -2.5820 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2153 2.3191 -0.0005 29 1 1.3342 4.5114 -0.0019 30 1 3.7903 4.6457 -0.0005 31 1 5.1406 2.5883 0.0000 32 1 6.2730 1.0432 -0.8698 33 1 6.2647 1.0476 0.9101 34 1 8.7326 0.4129 0.0348 35 1 10.2466 -2.9339 1.4867 36 1 9.9647 -1.2761 2.0711 37 1 8.6003 -2.4079 1.9116 38 1 12.2647 -3.9562 -0.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120863104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:51 Heat of formation + Delta-G solvation = -69.256083 kcal Electronic energy + Delta-G solvation = -20411.068690 eV Core-core repulsion = 17151.373285 eV Total energy + Delta-G solvation = -3259.695405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97268 -40.56610 -38.29370 -36.77151 -34.39795 -32.54029 -31.79791 -31.04477 -29.67034 -28.09716 -27.34753 -23.88584 -23.48480 -22.83746 -21.32340 -19.70532 -18.80293 -18.00585 -17.63678 -17.16892 -17.01276 -16.72891 -16.46958 -16.16379 -15.86184 -15.21771 -14.88605 -14.61665 -14.46708 -14.28886 -14.12226 -13.75228 -13.51091 -13.04427 -12.90727 -12.85687 -12.72393 -12.66415 -12.29095 -12.12687 -12.02100 -11.92599 -11.11060 -11.03510 -10.92513 -10.72338 -10.61352 -9.83141 -9.46722 -8.27535 -8.18288 -6.36134 0.21466 0.32865 0.43552 1.44937 1.45867 1.47783 1.57964 1.66152 2.32540 2.38660 2.55670 2.72327 3.12481 3.82398 3.85669 4.00172 4.00340 4.16770 4.25873 4.39421 4.39791 4.41959 4.57815 4.72660 4.73727 4.83325 4.90918 5.07509 5.17975 5.34429 5.40570 5.53290 5.57455 5.65749 5.80938 5.86886 6.07694 6.40273 6.71261 6.84461 7.29716 7.46503 8.88439 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.002907 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.274500 B = 9631.062722 C =10245.891125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.122 3.878 4 C -0.193 4.193 5 C -0.085 4.085 6 C -0.138 4.138 7 C -0.108 4.108 8 C -0.151 4.151 9 S -0.081 6.081 10 C -0.132 4.132 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.696 5.696 14 C 0.271 3.729 15 H -0.002 1.002 16 C -0.135 4.135 17 C -0.546 4.546 18 H 0.077 0.923 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.974 3.026 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.285 1.285 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.409 0.591 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.011 0.989 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.792 17.885 0.908 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.071 3.929 4 C -0.213 4.213 5 C -0.106 4.106 6 C -0.158 4.158 7 C -0.132 4.132 8 C -0.264 4.264 9 S 0.162 5.838 10 C -0.283 4.283 11 C 0.300 3.700 12 O -0.466 6.466 13 N -0.346 5.346 14 C 0.167 3.833 15 H 0.016 0.984 16 C -0.194 4.194 17 C -0.584 4.584 18 H 0.095 0.905 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.799 3.201 22 H -0.181 1.181 23 H -0.205 1.205 24 H -0.211 1.211 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.088 0.912 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.134 15.476 0.929 25.412 hybrid contribution 1.231 1.216 -0.283 1.753 sum -18.903 16.691 0.646 25.226 Atomic orbital electron populations 1.23347 0.76277 1.05362 1.02528 1.86161 1.23610 1.26937 1.88497 1.18685 0.90270 0.85737 0.98165 1.21478 1.01093 0.91412 1.07360 1.21412 0.94865 0.97697 0.96612 1.21364 0.94300 0.98507 1.01600 1.21345 1.00917 0.90519 1.00411 1.21492 0.94391 0.98139 1.12394 1.86768 0.97661 1.06868 1.92523 1.23749 0.94202 1.00519 1.09835 1.20209 0.83722 0.89670 0.76401 1.90693 1.78338 1.25469 1.52073 1.46151 1.04679 1.11508 1.72227 1.18389 0.87022 0.84503 0.93347 0.98368 1.21911 0.98492 1.01534 0.97442 1.21572 0.96696 0.98571 1.41549 0.90504 1.25835 1.02752 0.94688 0.95454 1.70064 1.33672 1.05043 1.46897 0.85260 0.78304 0.78842 0.77696 1.18129 1.20453 1.21100 0.91203 0.87160 0.91190 0.82675 0.82325 0.82755 0.83922 0.84225 0.84044 0.75500 0.91437 0.93765 0.97028 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.67 9.87 -93.65 -0.92 -9.60 16 3 C 0.12 3.00 6.69 22.60 0.15 3.15 16 4 C -0.19 -3.29 9.04 22.35 0.20 -3.09 16 5 C -0.09 -1.18 10.04 22.29 0.22 -0.96 16 6 C -0.14 -2.10 10.04 22.27 0.22 -1.88 16 7 C -0.11 -2.19 9.36 22.39 0.21 -1.98 16 8 C -0.15 -4.01 6.12 22.68 0.14 -3.87 16 9 S -0.08 -2.70 20.54 -56.49 -1.16 -3.86 16 10 C -0.13 -3.75 4.82 71.24 0.34 -3.41 16 11 C 0.51 20.83 7.81 87.66 0.68 21.52 16 12 O -0.58 -29.86 15.53 -3.01 -0.05 -29.90 16 13 N -0.70 -28.44 5.07 -446.10 -2.26 -30.70 16 14 C 0.27 14.10 2.56 44.24 0.11 14.21 16 15 H 0.00 -0.10 7.58 -2.38 -0.02 -0.12 16 16 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 17 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 18 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.01 0.68 5.30 84.66 0.45 1.13 16 20 N -0.92 -52.94 11.32 21.45 0.24 -52.70 16 21 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 26 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 28 H 0.16 1.73 6.30 -2.91 -0.02 1.71 16 29 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 30 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.14 2.36 5.88 -2.91 -0.02 2.35 16 32 H 0.14 3.13 7.74 -2.39 -0.02 3.11 16 33 H 0.14 3.10 7.76 -2.39 -0.02 3.08 16 34 H 0.41 13.42 8.54 -92.71 -0.79 12.63 16 35 H 0.07 3.78 6.07 -2.38 -0.01 3.77 16 36 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.27 14.44 8.31 -92.72 -0.77 13.67 16 Total: -1.00 -74.79 334.54 2.91 -71.88 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.29 Total: 19.55 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.74 Total: -8.46 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.02 Total: -83.40 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.97 Total: -39.50 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -1.16 Total: -3.86 kcal Total: -74.79 2.91 -71.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120863104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.624 kcal (2) G-P(sol) polarization free energy of solvation -74.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds