Wall clock time and date at job start Tue Mar 31 2020 07:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46779 * 2 1 4 4 C 1.52995 * 109.47074 * 240.00171 * 2 1 3 5 5 C 1.52998 * 109.47266 * 175.00010 * 4 2 1 6 6 O 1.42906 * 109.47412 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47388 * 120.00151 * 2 1 3 8 8 C 1.34778 * 119.99867 * 275.00487 * 7 2 1 9 9 O 1.21609 * 119.99939 * 359.97438 * 8 7 2 10 10 C 1.47421 * 119.99900 * 180.02562 * 8 7 2 11 11 C 1.39681 * 120.21901 * 359.96940 * 10 8 7 12 12 C 1.37808 * 119.94286 * 180.02562 * 11 10 8 13 13 C 1.38654 * 120.37767 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44334 * 359.97438 * 13 12 11 15 15 C 1.39109 * 120.04959 * 0.02562 * 14 13 12 16 16 S 1.76204 * 120.19269 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99694 * 6.88400 * 16 15 14 18 18 H 1.07998 * 120.00125 * 5.65292 * 17 16 15 19 19 C 1.38802 * 119.99933 * 185.66292 * 17 16 15 20 20 N 1.31556 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46752 * 89.99632 * 21 19 17 23 23 H 1.48490 * 109.47122 * 209.99672 * 21 19 17 24 24 H 1.48502 * 109.46765 * 329.99906 * 21 19 17 25 25 H 1.08997 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46647 * 299.99994 * 1 2 3 27 27 H 1.08999 * 109.47147 * 60.00098 * 1 2 3 28 28 H 1.09002 * 109.47153 * 294.99994 * 4 2 1 29 29 H 1.09004 * 109.47388 * 54.99779 * 4 2 1 30 30 H 1.09002 * 109.47022 * 300.00064 * 5 4 2 31 31 H 1.08995 * 109.47038 * 59.99845 * 5 4 2 32 32 H 0.96695 * 114.00269 * 180.02562 * 6 5 4 33 33 H 0.96999 * 120.00020 * 94.99642 * 7 2 1 34 34 H 1.08003 * 120.02265 * 0.02562 * 11 10 8 35 35 H 1.07998 * 119.80890 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.77710 * 180.27598 * 13 12 11 37 37 H 1.08005 * 119.97866 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 8 4.0412 -1.2864 -2.4809 7 7 2.0184 -0.6906 1.1961 8 6 2.1471 -0.0183 2.3571 9 8 1.8582 1.1617 2.4116 10 6 2.6391 -0.7131 3.5606 11 6 2.9726 -2.0683 3.5030 12 6 3.4315 -2.7123 4.6317 13 6 3.5643 -2.0228 5.8273 14 6 3.2395 -0.6846 5.9019 15 6 2.7746 -0.0166 4.7738 16 16 2.3579 1.6930 4.8651 17 6 2.9100 2.0556 6.4986 18 1 3.4373 1.3055 7.0694 19 6 2.6671 3.3052 7.0520 20 7 2.0251 4.2190 6.3566 21 14 3.2518 3.6894 8.7841 22 1 4.6237 4.2552 8.7292 23 1 2.3342 4.6756 9.4088 24 1 3.2623 2.4427 9.5908 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8532 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4260 32 1 5.0019 -1.2587 -2.5863 33 1 2.2491 -1.6318 1.1525 34 1 2.8710 -2.6108 2.5747 35 1 3.6892 -3.7600 4.5846 36 1 3.9291 -2.5360 6.7048 37 1 3.3462 -0.1547 6.8370 38 1 1.8557 5.0923 6.7432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123472767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:51 Heat of formation + Delta-G solvation = -69.026952 kcal Electronic energy + Delta-G solvation = -21064.332729 eV Core-core repulsion = 17804.647260 eV Total energy + Delta-G solvation = -3259.685469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.69935 -37.86053 -37.10950 -35.46520 -32.76361 -32.01663 -30.28760 -30.07718 -28.88343 -25.83527 -23.94504 -22.97361 -21.99470 -20.91846 -20.11114 -18.26254 -17.54223 -17.04701 -16.26860 -15.70987 -15.15184 -15.01906 -14.77290 -14.49246 -14.07439 -13.99358 -13.71988 -13.16753 -13.03807 -12.92766 -12.49331 -12.08304 -11.92494 -11.81512 -11.59896 -11.24850 -11.20778 -11.17972 -10.94853 -10.89034 -10.33351 -10.14679 -9.81817 -9.64578 -9.50750 -8.81233 -8.73953 -8.34643 -8.07289 -6.54608 -6.47123 -4.17784 1.52178 2.00608 3.09598 3.12156 3.18855 3.40205 3.49757 3.51951 3.94873 4.05645 4.47517 4.85503 4.87469 4.93941 5.04366 5.12157 5.30149 5.36169 5.38452 5.41227 5.51606 5.58924 5.69506 5.80123 5.84102 5.91206 6.09752 6.16501 6.31113 6.37758 6.58445 6.78701 6.84918 7.02165 7.12307 7.40846 7.43696 7.58017 7.90430 8.15149 8.79016 8.99154 10.56116 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.004243 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.363772 B = 6597.467381 C = 7466.893375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.073 3.927 6 O -0.579 6.579 7 N -0.736 5.736 8 C 0.553 3.447 9 O -0.508 6.508 10 C -0.178 4.178 11 C -0.061 4.061 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.057 4.057 16 S 0.185 5.815 17 C -0.597 4.597 18 H 0.091 0.909 19 C 0.084 3.916 20 N -0.858 5.858 21 Si 0.919 3.081 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.268 1.268 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.379 0.621 33 H 0.394 0.606 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -11.637 -11.021 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.109 0.891 4 C -0.163 4.163 5 C -0.005 4.005 6 O -0.384 6.384 7 N -0.391 5.391 8 C 0.342 3.658 9 O -0.385 6.385 10 C -0.194 4.194 11 C -0.081 4.081 12 C -0.212 4.212 13 C -0.099 4.099 14 C -0.178 4.178 15 C -0.177 4.177 16 S 0.450 5.550 17 C -0.743 4.743 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.491 5.491 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.366 -9.495 -11.788 15.141 hybrid contribution 1.659 -1.086 2.131 2.911 sum 2.025 -10.581 -9.657 14.467 Atomic orbital electron populations 1.22160 0.95052 1.02010 1.02809 1.20783 0.94224 0.97652 0.83166 0.89136 1.21810 0.94327 1.02008 0.98136 1.22223 0.94955 0.96037 0.87250 1.86431 1.27264 1.78905 1.45814 1.45994 1.69778 1.13693 1.09589 1.18315 0.78003 0.86624 0.82829 1.90782 1.48865 1.15105 1.83796 1.19126 1.12916 0.94378 0.92936 1.20894 0.96792 0.92924 0.97536 1.20633 1.07656 0.99348 0.93527 1.21086 0.97390 0.94310 0.97118 1.21440 1.02862 0.94556 0.98975 1.23101 0.97431 1.03148 0.94019 1.84748 1.63712 0.93035 1.13539 1.24062 1.43207 1.02670 1.04370 0.89160 1.25094 0.93641 0.94982 0.99004 1.69973 1.36510 1.05124 1.37449 0.86152 0.78856 0.78652 0.81919 1.19867 1.20467 1.19230 0.92642 0.91374 0.91905 0.90821 0.89859 0.93366 0.93187 0.77388 0.77143 0.87231 0.87099 0.87032 0.84383 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.15 1.79 2.57 -67.93 -0.17 1.61 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.12 -1.22 5.12 -26.73 -0.14 -1.36 16 5 C 0.07 0.73 6.93 37.16 0.26 0.98 16 6 O -0.58 -5.65 13.66 -35.23 -0.48 -6.13 16 7 N -0.74 -10.06 4.48 -54.88 -0.25 -10.31 16 8 C 0.55 10.40 7.71 -12.52 -0.10 10.30 16 9 O -0.51 -11.57 13.43 5.27 0.07 -11.50 16 10 C -0.18 -3.46 5.89 -104.75 -0.62 -4.08 16 11 C -0.06 -0.95 9.53 -39.20 -0.37 -1.33 16 12 C -0.19 -2.84 10.02 -39.59 -0.40 -3.24 16 13 C -0.08 -1.30 10.02 -39.55 -0.40 -1.70 16 14 C -0.15 -3.18 9.22 -39.38 -0.36 -3.54 16 15 C -0.06 -1.29 6.15 -38.39 -0.24 -1.53 16 16 S 0.19 4.92 18.56 -107.50 -2.00 2.93 16 17 C -0.60 -16.37 9.00 30.94 0.28 -16.09 16 18 H 0.09 2.35 4.98 -52.49 -0.26 2.09 16 19 C 0.08 2.29 5.49 -17.46 -0.10 2.19 16 20 N -0.86 -24.63 13.22 55.49 0.73 -23.89 16 21 Si 0.92 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.38 2.10 9.12 45.56 0.42 2.52 16 33 H 0.39 4.37 6.63 -40.82 -0.27 4.10 16 34 H 0.11 1.28 6.40 -52.48 -0.34 0.95 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 37 H 0.14 2.99 5.04 -52.48 -0.26 2.73 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -32.51 332.16 -7.97 -40.47 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.03 Total: 7.18 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.00 Total: -19.32 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.49 Total: -34.20 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.41 Total: -17.63 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.00 Total: 2.93 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.51 -7.97 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123472767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.553 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds