Wall clock time and date at job start Tue Mar 31 2020 07:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46779 * 2 1 4 4 C 1.52995 * 109.47074 * 240.00171 * 2 1 3 5 5 C 1.52998 * 109.47266 * 175.00010 * 4 2 1 6 6 O 1.42906 * 109.47412 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47388 * 120.00151 * 2 1 3 8 8 C 1.34778 * 119.99867 * 275.00487 * 7 2 1 9 9 O 1.21609 * 119.99939 * 359.97438 * 8 7 2 10 10 C 1.47421 * 119.99900 * 180.02562 * 8 7 2 11 11 C 1.39681 * 120.21901 * 359.96940 * 10 8 7 12 12 C 1.37808 * 119.94286 * 180.02562 * 11 10 8 13 13 C 1.38654 * 120.37767 * 0.02562 * 12 11 10 14 14 C 1.37909 * 120.44334 * 359.97438 * 13 12 11 15 15 C 1.39109 * 120.04959 * 0.02562 * 14 13 12 16 16 S 1.76204 * 120.19269 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99694 * 6.88400 * 16 15 14 18 18 H 1.07998 * 120.00125 * 5.65292 * 17 16 15 19 19 C 1.38802 * 119.99933 * 185.66292 * 17 16 15 20 20 N 1.31556 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46752 * 89.99632 * 21 19 17 23 23 H 1.48490 * 109.47122 * 209.99672 * 21 19 17 24 24 H 1.48502 * 109.46765 * 329.99906 * 21 19 17 25 25 H 1.08997 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46647 * 299.99994 * 1 2 3 27 27 H 1.08999 * 109.47147 * 60.00098 * 1 2 3 28 28 H 1.09002 * 109.47153 * 294.99994 * 4 2 1 29 29 H 1.09004 * 109.47388 * 54.99779 * 4 2 1 30 30 H 1.09002 * 109.47022 * 300.00064 * 5 4 2 31 31 H 1.08995 * 109.47038 * 59.99845 * 5 4 2 32 32 H 0.96695 * 114.00269 * 180.02562 * 6 5 4 33 33 H 0.96999 * 120.00020 * 94.99642 * 7 2 1 34 34 H 1.08003 * 120.02265 * 0.02562 * 11 10 8 35 35 H 1.07998 * 119.80890 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.77710 * 180.27598 * 13 12 11 37 37 H 1.08005 * 119.97866 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 8 4.0412 -1.2864 -2.4809 7 7 2.0184 -0.6906 1.1961 8 6 2.1471 -0.0183 2.3571 9 8 1.8582 1.1617 2.4116 10 6 2.6391 -0.7131 3.5606 11 6 2.9726 -2.0683 3.5030 12 6 3.4315 -2.7123 4.6317 13 6 3.5643 -2.0228 5.8273 14 6 3.2395 -0.6846 5.9019 15 6 2.7746 -0.0166 4.7738 16 16 2.3579 1.6930 4.8651 17 6 2.9100 2.0556 6.4986 18 1 3.4373 1.3055 7.0694 19 6 2.6671 3.3052 7.0520 20 7 2.0251 4.2190 6.3566 21 14 3.2518 3.6894 8.7841 22 1 4.6237 4.2552 8.7292 23 1 2.3342 4.6756 9.4088 24 1 3.2623 2.4427 9.5908 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8532 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4260 32 1 5.0019 -1.2587 -2.5863 33 1 2.2491 -1.6318 1.1525 34 1 2.8710 -2.6108 2.5747 35 1 3.6892 -3.7600 4.5846 36 1 3.9291 -2.5360 6.7048 37 1 3.3462 -0.1547 6.8370 38 1 1.8557 5.0923 6.7432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123472767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:51 Heat of formation + Delta-G solvation = -93.374317 kcal Electronic energy + Delta-G solvation = -21065.388510 eV Core-core repulsion = 17804.647260 eV Total energy + Delta-G solvation = -3260.741250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10753 -39.17150 -38.13987 -36.57903 -34.76422 -33.32710 -31.77784 -31.36263 -29.82681 -27.83857 -25.23282 -24.02044 -23.41811 -22.06541 -21.48459 -19.93923 -18.82018 -18.16480 -17.56115 -17.14934 -16.95031 -16.07730 -16.00156 -15.84303 -15.41546 -15.29034 -15.17570 -14.70023 -14.43459 -14.14916 -13.72888 -13.30788 -13.26235 -12.98800 -12.94244 -12.85557 -12.77801 -12.54334 -12.06103 -12.03115 -11.87721 -11.47782 -11.40225 -11.23933 -10.89176 -10.41029 -10.12189 -9.89012 -9.75819 -8.45988 -8.45100 -6.24038 0.05051 0.54592 1.26641 1.36133 1.44932 1.65318 2.04833 2.17343 2.29834 2.87888 3.05393 3.19928 3.25258 3.92769 3.99031 4.01772 4.07363 4.25067 4.28090 4.46635 4.51018 4.60069 4.62746 4.64999 4.83127 4.86251 4.91061 5.05296 5.10841 5.18621 5.31489 5.37056 5.46416 5.57354 5.63192 5.68297 6.10308 6.16842 6.67060 6.86641 6.96104 7.40583 8.60342 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.004243 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.363772 B = 6597.467381 C = 7466.893375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.064 0.936 4 C -0.114 4.114 5 C 0.073 3.927 6 O -0.589 6.589 7 N -0.710 5.710 8 C 0.548 3.452 9 O -0.555 6.555 10 C -0.182 4.182 11 C -0.054 4.054 12 C -0.158 4.158 13 C -0.070 4.070 14 C -0.176 4.176 15 C -0.074 4.074 16 S 0.065 5.935 17 C -0.603 4.603 18 H 0.094 0.906 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 0.993 3.007 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.258 1.258 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.397 0.603 33 H 0.411 0.589 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 -16.343 -11.892 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.004 4.004 6 O -0.397 6.397 7 N -0.365 5.365 8 C 0.336 3.664 9 O -0.435 6.435 10 C -0.195 4.195 11 C -0.073 4.073 12 C -0.180 4.180 13 C -0.091 4.091 14 C -0.201 4.201 15 C -0.192 4.192 16 S 0.324 5.676 17 C -0.750 4.750 18 H 0.112 0.888 19 C -0.181 4.181 20 N -0.540 5.540 21 Si 0.814 3.186 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.247 0.753 33 H 0.249 0.751 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.135 0.865 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.577 -14.343 -12.715 19.232 hybrid contribution 1.360 -0.043 2.168 2.560 sum 2.938 -14.385 -10.547 18.077 Atomic orbital electron populations 1.22116 0.94454 1.03016 1.02014 1.20868 0.94668 0.96723 0.83591 0.91810 1.21699 0.94279 1.02560 0.96595 1.22162 0.95049 0.95693 0.87544 1.86381 1.29158 1.78696 1.45491 1.45787 1.68010 1.14255 1.08449 1.18472 0.77643 0.86179 0.84068 1.90786 1.50840 1.17349 1.84520 1.19528 1.11884 0.96131 0.91994 1.21444 0.94825 0.90927 1.00152 1.21323 1.03366 1.01508 0.91850 1.21535 0.95609 0.92423 0.99573 1.21443 1.04373 0.96526 0.97734 1.23011 0.99277 1.00617 0.96269 1.84916 1.68836 0.98673 1.15176 1.24259 1.43349 1.03151 1.04228 0.88847 1.26136 0.93825 0.94677 1.03444 1.70128 1.38762 1.05620 1.39514 0.85046 0.78430 0.78718 0.76439 1.19121 1.19799 1.18135 0.90624 0.95028 0.89930 0.89080 0.88887 0.94244 0.93042 0.75335 0.75082 0.82174 0.81701 0.83390 0.86478 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.48 71.98 0.68 -2.87 16 2 C 0.15 3.41 2.57 44.99 0.12 3.53 16 3 H 0.06 1.88 7.58 -2.38 -0.02 1.86 16 4 C -0.11 -1.90 5.12 30.59 0.16 -1.74 16 5 C 0.07 1.29 6.93 71.98 0.50 1.79 16 6 O -0.59 -9.77 13.66 -148.98 -2.04 -11.81 16 7 N -0.71 -18.17 4.48 -445.80 -2.00 -20.17 16 8 C 0.55 20.81 7.71 86.66 0.67 21.47 16 9 O -0.55 -27.05 13.43 -4.06 -0.05 -27.10 16 10 C -0.18 -6.90 5.89 -19.95 -0.12 -7.02 16 11 C -0.05 -1.40 9.53 22.52 0.21 -1.19 16 12 C -0.16 -3.78 10.02 22.27 0.22 -3.56 16 13 C -0.07 -2.10 10.02 22.29 0.22 -1.88 16 14 C -0.18 -7.29 9.22 22.40 0.21 -7.08 16 15 C -0.07 -3.44 6.15 23.04 0.14 -3.30 16 16 S 0.07 3.77 18.56 -56.49 -1.05 2.72 16 17 C -0.60 -35.40 9.00 67.95 0.61 -34.79 16 18 H 0.09 5.17 4.98 -2.91 -0.01 5.16 16 19 C 0.02 1.43 5.49 84.87 0.47 1.89 16 20 N -0.91 -55.70 13.22 21.64 0.29 -55.41 16 21 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.87 7.75 -2.39 -0.02 0.86 16 32 H 0.40 3.33 9.12 -74.06 -0.68 2.65 16 33 H 0.41 7.40 6.63 -92.71 -0.61 6.79 16 34 H 0.16 2.59 6.40 -2.91 -0.02 2.57 16 35 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.12 5.29 5.04 -2.91 -0.01 5.28 16 38 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -80.24 332.16 1.08 -79.16 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.19 Total: 21.26 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 4.09 Total: -34.74 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.71 Total: -75.58 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -2.09 Total: -38.91 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.05 Total: 2.72 kcal Total: -80.24 1.08 -79.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123472767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.217 kcal (2) G-P(sol) polarization free energy of solvation -80.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds